Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014722

Physical Location & Seq

Genomic Coordinates Forward (+)

950580 .. 953925

Gene Structure 3346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G011800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGACCCACCTCATCCCCACCACCCTCTCTCAGACCCTCTCCCTGCTCTGGGCCCTCCGTCCTCCACCCGACCCGTCCACTGTGTTTAAGCTCCAAAACAGTAGTGGTAGTGCCTTCCAAGAAACCCAGAACTACTCGCACGCAAGAGAAGCGGCAGAGAAAGAGTTGGAAATATACAAGGCAGTGGTGAGGTTGGAGGAGATGCACGAGGCCTATGAGGAACAGTTGAGGGATGCGGAAGTGAGGCTTGCTGAGGCATATGGCTCGGCCGTGGTTGATTTAGAAAAGGAGGAGGGTGAGGTGAACAAACTGAATGAGGAAGTGGTTAGGATTTTGGAGGCAGAGAGTGGGGTAGCTGTTAAAAGAGTAGAGCTTTCTGGGAGTCATCTGAGGTTTATTTGTTTGGCAAAACAGTCCATTCCAGATTCAATAGCAGGACTTGAGAAACTCAAGCAGCTCCATGTTTTGTGTTATCTTTTAGTTTCCTTGCCCAACTCCGTCGGATTGTTGCTTAACCTGAGGGTCCTCAATGTGTCAGGAAACAAGCTGGATGCCCTTCCTAAAAGCATTGCTCGTTGTAGATATCTAGATGTTCATTTCAATGAGCTTCGTGGGCTGCCATATGCAATTGGGAGATTGACGACTCATGAGGTGCTCAACCTGTCCAGCAACTTCAGTGACTTGACAGAGCTTCCTGAATCAATTGGCGATCAAACCAATCTCAGGGAGCTTGATCTAAGAAACAACCAGATTCGAGCTCTCACAACTTGTGAAGAGTATGGATTTTTCCAGATCATCAACCATGGAGTGCCTGAGGAGTTATGTTATATAATGATGGCTGCCATGACCCAGTTCTTCAAATTGCCTGCCAAAGAAAGAGCACAATACTTTACCACAGATCACTCCAAGCCAATAAAGCTTTTCAACTACTACCTCAAGCTTGAAGTTTGTGCCCATTTTTATGTTTGGGTTTTTGGTTTTAGTGAGGTTTTTGCTGAATGTGAAAAGGAGATTGGTGCATTGGTGAAAAGGCTTTTGGGATTGATATCCCAAGGGCTTGGCCCAGAGGAGGACTGCTTACAGAAGAAATTGGGTGAGAATCCTACTCAAAAAGCACAAGGAAACTACTATCCACCATGTCCTGACCCTGAGCTCACACTTGGACTATCTGTCCATACTGATCTCAATGCCCTCACAATACTTAGGCAAACAGAGGGAGTGACTGGCCTTCAAGTACTGATCAAAGATGAGAAATGGGTTGCTGTTGATCCTCTCCCAAGTGCCTCTGTCATCAATCTAGCAATGTTCTACGGACCTAGCAAGGACACGGTGATTGGTCCAACTGAGGATTTGATTGACGAGGAACACCCTCCATTGTACCGGAGTTATAACCCATCAGTTGACCTGATGCCAATGGACTTCAAGGGTGTGTGGGCAGCCATGGAAGAATCTCAGAGACTTGGCCTCACCAAATCAATTGGAGTCAGCAATTTCTCCAGCAAAAAGATTGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006928 GO:0008150 GO:0009987 GO:0031514 GO:0032838 GO:0036126 GO:0040011 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0048870 GO:0051179 GO:0051674 GO:0097014 GO:0097223 GO:0097722 GO:0097729 GO:0099568 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N LRR_6

Protein Analysis

506

Amino Acids

56.68

Weight (kDa)

5.15

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25590
malus_domestica	MD16G1101600.v1.1 MD16G1101900.v1.1
prunus_persica	Prupe.8G011800_v2.0.a1
pyrus_communis	pycom16g08630
rosa_chinensis	RchiOBHm_Chr5g0016311
rosa_laevigata	RLG00000006792
rosa_multiflora	Rmu_co8454895.1_g000001 Rmu_sc0001762.1_g000036
rosa_roxburghii	Rroxscaffold_5G00374460
rosa_samantha	Rh1AG277500 Rh4AG318700 Rh4BG326800 Rh4CG342200 Rh4DG322000 Rh5CG136300
rosa_wichuraiana	Rw4G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1389
AciI	CCGC	2 cut(s)	152, 236
AclWI	GGATC	1 cut(s)	1262
AcoI	YGGCCR	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	658
AfaI	GTAC	2 cut(s)	1236, 1379
AfiI	CCNNNNNNNGG	4 cut(s)	48, 49, 723, 1069
AgsI	TTSAA	8 cut(s)	429, 601, 859, 925, 944, 1232, 1423, 1511
AhdI	GACNNNNNGTC	1 cut(s)	1169
AjuI	GAANNNNNNNTTGG	4 cut(s)	996, 1019, 1028, 1051
Alw21I	GWGCWC	4 cut(s)	657, 760, 883, 1155
Alw26I	GTCTC	1 cut(s)	1450
AlwI	GGATC	1 cut(s)	1262
AoxI	GGCC	6 cut(s)	51, 210, 267, 1060, 1225, 1462
ApaI	GGGCCC	1 cut(s)	55
ApeKI	GCWGC	4 cut(s)	454, 616, 839, 1436
AspS9I	GGNCC	6 cut(s)	51, 52, 523, 1061, 1313, 1337
AsuHPI	GGTGA	7 cut(s)	199, 308, 313, 1036, 1106, 1342, 1459
AvaII	GGWCC	3 cut(s)	523, 1313, 1337
AxyI	CCTNAGG	2 cut(s)	518, 813
BaeGI	GKGCMC	2 cut(s)	55, 955
BanII	GRGCYC	3 cut(s)	55, 760, 1155
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	4 cut(s)	657, 760, 883, 1155
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	466, 603, 826, 1448
BccI	CCATC	2 cut(s)	829, 1402
BceAI	ACGGC	1 cut(s)	254
BcgI	CGANNNNNNTGC	2 cut(s)	246, 280
BclI	TGATCA	1 cut(s)	1239
BcoDI	GTCTC	1 cut(s)	1450
BfaI	CTAG	3 cut(s)	587, 1298, 1317
BisI	GCNGC	5 cut(s)	153, 455, 617, 840, 1437
BlsI	GCNGC	5 cut(s)	154, 456, 618, 841, 1438
BmcAI	AGTACT	1 cut(s)	1236
Bme18I	GGWCC	3 cut(s)	523, 1313, 1337
BmeRI	GACNNNNNGTC	1 cut(s)	1169
BmgT120I	GGNCC	6 cut(s)	51, 52, 523, 1061, 1313, 1337
BmiI	GGNNCC	2 cut(s)	53, 524
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	4 cut(s)	192, 223, 541, 1398
BmuI	ACTGGG	1 cut(s)	844
BpmI	CTGGAG	1 cut(s)	1480
Bpu10I	CCTNAGC	2 cut(s)	252, 1149
BpuEI	CTTGAG	3 cut(s)	434, 461, 920
BsaBI	GATNNNNATC	1 cut(s)	1045
BsaJI	CCNNGG	4 cut(s)	270, 802, 1051, 1440
BsaWI	WCCGGW	1 cut(s)	1380
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 49, 723, 1069
Bse1I	ACTGG	2 cut(s)	850, 1228
Bse21I	CCTNAGG	2 cut(s)	518, 813
Bse3DI	GCAATG	2 cut(s)	567, 1308
Bse8I	GATNNNNATC	1 cut(s)	1045
BseDI	CCNNGG	4 cut(s)	270, 802, 1051, 1440
BseGI	GGATG	3 cut(s)	12, 238, 556
BseJI	GATNNNNATC	1 cut(s)	1045
BseLI	CCNNNNNNNGG	4 cut(s)	48, 49, 723, 1069
BseMI	GCAATG	2 cut(s)	567, 1308
BseMII	CTCAG	9 cut(s)	44, 243, 380, 509, 736, 804, 1140, 1335, 1466
BseNI	ACTGG	2 cut(s)	850, 1228
BseRI	GAGGAG	4 cut(s)	212, 305, 830, 1082
BseSI	GKGCMC	2 cut(s)	55, 955
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	466, 603, 826, 1448
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	6 cut(s)	53, 212, 269, 1062, 1227, 1464
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	4 cut(s)	657, 760, 883, 1155
BsiSI	CCGG	1 cut(s)	1381
BslI	CCNNNNNNNGG	4 cut(s)	48, 49, 723, 1069
BsmAI	GTCTC	1 cut(s)	1450
BsnI	GGCC	6 cut(s)	53, 212, 269, 1062, 1227, 1464
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	6 cut(s)	55, 657, 760, 883, 955, 1155
Bsp143I	GATC	7 cut(s)	709, 733, 792, 898, 1180, 1239, 1267
Bsp19I	CCATGG	2 cut(s)	802, 1440
BspACI	CCGC	2 cut(s)	152, 236
BspANI	GGCC	6 cut(s)	53, 212, 269, 1062, 1227, 1464
BspCNI	CTCAG	9 cut(s)	43, 244, 381, 510, 735, 805, 1141, 1336, 1465
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	53, 524
BspPI	GGATC	1 cut(s)	1262
BsrDI	GCAATG	2 cut(s)	567, 1308
BsrI	ACTGG	2 cut(s)	850, 1228
BssECI	CCNNGG	4 cut(s)	270, 802, 1051, 1440
BssMI	GATC	7 cut(s)	709, 733, 792, 898, 1180, 1239, 1267
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	3 cut(s)	802, 1051, 1440
Bst2BI	CACGAG	1 cut(s)	206
Bst4CI	ACNGT	5 cut(s)	82, 101, 225, 414, 1330
Bst6I	CTCTTC	1 cut(s)	768
BstC8I	GCNNGC	3 cut(s)	141, 249, 867
BstDSI	CCRYGG	3 cut(s)	270, 802, 1440
BstF5I	GGATG	3 cut(s)	12, 238, 556
BstKTI	GATC	7 cut(s)	712, 736, 795, 901, 1183, 1242, 1270
BstMAI	GTCTC	1 cut(s)	1450
BstMBI	GATC	7 cut(s)	709, 733, 792, 898, 1180, 1239, 1267
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 613, 916
BstSLI	GKGCMC	2 cut(s)	55, 955
BstV1I	GCAGC	4 cut(s)	466, 603, 826, 1448
BstXI	CCANNNNNNTGG	1 cut(s)	1058
BstZI	CGGCCG	1 cut(s)	267
Bsu36I	CCTNAGG	2 cut(s)	518, 813
BsuRI	GGCC	6 cut(s)	53, 212, 269, 1062, 1227, 1464
BtgI	CCRYGG	3 cut(s)	270, 802, 1440
BtsCI	GGATG	3 cut(s)	12, 238, 556
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	78, 189, 682
Cac8I	GCNNGC	3 cut(s)	141, 249, 867
CciI	TCATGA	1 cut(s)	646
Cfr13I	GGNCC	6 cut(s)	51, 52, 523, 1061, 1313, 1337
Csp6I	GTAC	2 cut(s)	1235, 1378
CviAII	CATG	6 cut(s)	461, 647, 803, 844, 1137, 1441
CviQI	GTAC	2 cut(s)	1235, 1378
DpnI	GATC	7 cut(s)	711, 735, 794, 900, 1182, 1241, 1269
DpnII	GATC	7 cut(s)	709, 733, 792, 898, 1180, 1239, 1267
DriI	GACNNNNNGTC	1 cut(s)	1169
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	768
Eam1105I	GACNNNNNGTC	1 cut(s)	1169
EarI	CTCTTC	1 cut(s)	768
Ecl136II	GAGCTC	2 cut(s)	758, 1153
EclXI	CGGCCG	1 cut(s)	267
Eco130I	CCWWGG	3 cut(s)	802, 1051, 1440
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	3 cut(s)	55, 760, 1155
Eco32I	GATATC	2 cut(s)	584, 1047
Eco47I	GGWCC	3 cut(s)	523, 1313, 1337
Eco52I	CGGCCG	1 cut(s)	267
Eco53kI	GAGCTC	2 cut(s)	758, 1153
Eco57I	CTGAAG	1 cut(s)	658
Eco81I	CCTNAGG	2 cut(s)	518, 813
EcoICRI	GAGCTC	2 cut(s)	758, 1153
EcoO109I	RGGNCCY	2 cut(s)	52, 523
EcoRV	GATATC	2 cut(s)	584, 1047
EcoT14I	CCWWGG	3 cut(s)	802, 1051, 1440
EcoT38I	GRGCYC	3 cut(s)	55, 760, 1155
ErhI	CCWWGG	3 cut(s)	802, 1051, 1440
FaeI	CATG	6 cut(s)	464, 650, 806, 847, 1140, 1444
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	6 cut(s)	460, 646, 802, 843, 1136, 1440
FauNDI	CATATG	2 cut(s)	259, 622
FbaI	TGATCA	1 cut(s)	1239
Fnu4HI	GCNGC	5 cut(s)	153, 455, 617, 840, 1437
FokI	GGATG	2 cut(s)	245, 563
FriOI	GRGCYC	3 cut(s)	55, 760, 1155
Fsp4HI	GCNGC	5 cut(s)	153, 455, 617, 840, 1437
FspBI	CTAG	3 cut(s)	587, 1298, 1317
GluI	GCNGC	5 cut(s)	153, 455, 617, 840, 1437
GsuI	CTGGAG	1 cut(s)	1480
HaeIII	GGCC	6 cut(s)	53, 212, 269, 1062, 1227, 1464
HapII	CCGG	1 cut(s)	1381
Hin1II	CATG	6 cut(s)	464, 650, 806, 847, 1140, 1444
HincII	GTYRAC	1 cut(s)	1402
HindII	GTYRAC	1 cut(s)	1402
HindIII	AAGCTT	2 cut(s)	917, 938
HinfI	GANTC	8 cut(s)	382, 425, 643, 698, 751, 1099, 1448, 1482
HpaII	CCGG	1 cut(s)	1381
HphI	GGTGA	7 cut(s)	199, 308, 313, 1036, 1106, 1342, 1459
Hpy166II	GTNNAC	3 cut(s)	78, 304, 1402
Hpy188I	TCNGA	4 cut(s)	33, 390, 503, 1455
Hpy188III	TCNNGA	7 cut(s)	422, 537, 587, 647, 695, 790, 1142
Hpy8I	GTNNAC	3 cut(s)	78, 304, 1402
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	3 cut(s)	124, 566, 1238
HpyCH4III	ACNGT	5 cut(s)	82, 101, 225, 414, 1330
HpyCH4V	TGCA	3 cut(s)	205, 626, 1019
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 613, 916
Hsp92II	CATG	6 cut(s)	464, 650, 806, 847, 1140, 1444
Ksp22I	TGATCA	1 cut(s)	1239
Kzo9I	GATC	7 cut(s)	709, 733, 792, 898, 1180, 1239, 1267
LmnI	GCTCC	3 cut(s)	96, 462, 727
Lsp1109I	GCAGC	4 cut(s)	466, 603, 826, 1448
LweI	GCATC	4 cut(s)	192, 223, 541, 1398
MaeI	CTAG	3 cut(s)	587, 1298, 1317
MaeIII	GTNAC	2 cut(s)	677, 1219
MalI	GATC	7 cut(s)	711, 735, 794, 900, 1182, 1241, 1269
MboI	GATC	7 cut(s)	709, 733, 792, 898, 1180, 1239, 1267
MboII	GAAGA	4 cut(s)	785, 847, 1096, 1457
MfeI	CAATTG	3 cut(s)	627, 702, 1476
MhlI	GDGCHC	6 cut(s)	55, 657, 760, 883, 955, 1155
MluCI	AATT	6 cut(s)	627, 702, 860, 1088, 1476, 1489
MlyI	GAGTC	3 cut(s)	391, 637, 1491
MmeI	TCCRAC	4 cut(s)	147, 174, 481, 1364
MseI	TTAA	3 cut(s)	87, 360, 513
MslI	CAYNNNNRTG	2 cut(s)	600, 960
MspI	CCGG	1 cut(s)	1381
MunI	CAATTG	3 cut(s)	627, 702, 1476
MwoI	GCNNNNNNNGC	3 cut(s)	149, 613, 916
NcoI	CCATGG	2 cut(s)	802, 1440
NdeI	CATATG	2 cut(s)	259, 622
NdeII	GATC	7 cut(s)	709, 733, 792, 898, 1180, 1239, 1267
NlaIII	CATG	6 cut(s)	464, 650, 806, 847, 1140, 1444
NlaIV	GGNNCC	2 cut(s)	53, 524
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	2 cut(s)	677, 1219
PagI	TCATGA	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	212
PfeI	GAWTC	5 cut(s)	425, 698, 751, 1099, 1448
PkrI	GCNGC	5 cut(s)	154, 456, 618, 841, 1438
PleI	GAGTC	3 cut(s)	390, 637, 1490
PpsI	GAGTC	3 cut(s)	390, 637, 1490
PpuMI	RGGWCCY	1 cut(s)	523
PsiI	TTATAA	1 cut(s)	1389
Psp124BI	GAGCTC	2 cut(s)	760, 1155
Psp5II	RGGWCCY	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	53, 524
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	6 cut(s)	51, 52, 523, 1061, 1313, 1337
PspPPI	RGGWCCY	1 cut(s)	523
RsaI	GTAC	2 cut(s)	1236, 1379
RsaNI	GTAC	2 cut(s)	1235, 1378
RseI	CAYNNNNRTG	2 cut(s)	600, 960
SacI	GAGCTC	2 cut(s)	760, 1155
SaqAI	TTAA	3 cut(s)	87, 360, 513
SatI	GCNGC	5 cut(s)	153, 455, 617, 840, 1437
Sau3AI	GATC	7 cut(s)	709, 733, 792, 898, 1180, 1239, 1267
Sau96I	GGNCC	6 cut(s)	51, 52, 523, 1061, 1313, 1337
ScaI	AGTACT	1 cut(s)	1236
SchI	GAGTC	3 cut(s)	391, 637, 1491
SduI	GDGCHC	6 cut(s)	55, 657, 760, 883, 955, 1155
SfaNI	GCATC	4 cut(s)	192, 223, 541, 1398
SinI	GGWCC	3 cut(s)	523, 1313, 1337
SmiMI	CAYNNNNRTG	2 cut(s)	600, 960
SmlI	CTYRAG	3 cut(s)	440, 449, 935
SmoI	CTYRAG	3 cut(s)	440, 449, 935
Sse9I	AATT	6 cut(s)	627, 702, 860, 1088, 1476, 1489
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	152, 236
SspMI	CTAG	3 cut(s)	587, 1298, 1317
SstI	GAGCTC	2 cut(s)	760, 1155
StuI	AGGCCT	1 cut(s)	212
StyI	CCWWGG	3 cut(s)	802, 1051, 1440
TaaI	ACNGT	5 cut(s)	82, 101, 225, 414, 1330
TaqI	TCGA	1 cut(s)	754
TasI	AATT	6 cut(s)	627, 702, 860, 1088, 1476, 1489
TatI	WGTACW	1 cut(s)	1234
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	5 cut(s)	425, 698, 751, 1099, 1448
Tru1I	TTAA	3 cut(s)	87, 360, 513
Tru9I	TTAA	3 cut(s)	87, 360, 513
TscAI	CASTG	3 cut(s)	85, 189, 682
TseFI	GTSAC	2 cut(s)	677, 1219
TseI	GCWGC	4 cut(s)	454, 616, 839, 1436
Tsp45I	GTSAC	2 cut(s)	677, 1219
TspDTI	ATGAA	1 cut(s)	584
TspGWI	ACGGA	3 cut(s)	47, 487, 1326
TspRI	CASTG	3 cut(s)	85, 189, 682
VpaK11BI	GGWCC	3 cut(s)	523, 1313, 1337
XbaI	TCTAGA	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XspI	CTAG	3 cut(s)	587, 1298, 1317
ZrmI	AGTACT	1 cut(s)	1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.