RchiOBHm_Chr5g0016311

Very-long-chain enoyl-CoA

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
11256356 .. 11258078
1723 bp
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UTR
Exon/CDS
Intron
PRQ29669

Sequence Viewer

Length: 363 bp
ATGAAGGTCATCGTAGTTACAAGGAGTGGTAGAGAGCTTTTCAAGGGTGGCCTTGAGCTCAGTGACTCTGAGGAGATCCATAAGCGATGTAAGTGTTTGCAGATGCATACTTTACATCCTGTAATACTTATGGAAGTTTGCAGAATTGGAAGTGAAGATTGGATGATTACTTTACATCCTGTTTACTGTGAAGGGTCAGTAGAGTGGGTTAGAGGTTGTATGACTGTTGAAGACCACAAATCAGGGTTGATTGCAAAAGAAAATATGTCCTTTTGTTATTGCAAAAGAAAATCTGTCCTTTTGTTTATCTCTCTGCTGAATTGTAATTCCAATCTCTTCTGCAATCTAATCTTCCAAACATAA

Protein Analysis

120

Amino Acids

13.8

Weight (kDa)

7.56

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014722)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 70
AgsI TTSAA 2 cut(s) 43, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 2 cut(s) 37, 58
AluI AGCT 2 cut(s) 37, 58
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 1 cut(s) 70
AoxI GGCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 60
BmsI GCATC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 74
BseGI GGATG 3 cut(s) 115, 168, 175
BseMII CTCAG 2 cut(s) 60, 73
BseRI GAGGAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 60
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 75
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 61, 72
BspPI GGATC 1 cut(s) 70
BssMI GATC 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 188, 226
Bst6I CTCTTC 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 59, 69
BstF5I GGATG 3 cut(s) 115, 168, 175
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 3 cut(s) 115, 168, 175
BtsIMutI CAGTG 1 cut(s) 67
CviJI RGCY 3 cut(s) 37, 51, 58
CviKI_1 RGCY 3 cut(s) 37, 51, 58
DdeI CTNAG 2 cut(s) 59, 69
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoT22I ATGCAT 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 60
FaiI YATR 6 cut(s) 81, 108, 131, 221, 266, 361
FokI GGATG 3 cut(s) 102, 162, 175
FriOI GRGCYC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 51
HinfI GANTC 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 188, 226
HpyCH4V TGCA 6 cut(s) 100, 106, 141, 254, 282, 342
HpyF3I CTNAG 2 cut(s) 59, 69
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 3 cut(s) 132, 192, 228
LweI GCATC 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 16, 62
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 4 cut(s) 167, 242, 328, 343
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 3 cut(s) 144, 319, 325
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 64, 206
Mph1103I ATGCAT 1 cut(s) 108
NdeII GATC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 108
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 60
PsuI RGATCY 1 cut(s) 75
SacI GAGCTC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 75
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 60
SetI ASST 4 cut(s) 9, 39, 60, 217
SfaNI GCATC 1 cut(s) 93
SgeI CNNG 6 cut(s) 33, 55, 65, 131, 191, 255
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 3 cut(s) 144, 319, 325
SstI GAGCTC 1 cut(s) 60
TaaI ACNGT 2 cut(s) 188, 226
TasI AATT 3 cut(s) 144, 319, 325
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 67
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.