Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014722

Physical Location & Seq

Genomic Coordinates Reverse (-)

10617502 .. 10617980

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATGACTGCCTATACACAATTCTTCAAACTTTCTGCTGAAGAAAAGGCACAGTACTTCACTACAGATCACACAAAGCAGGTCAAGCTTTTCAACTACTTCCTCAAGATTCAAGGTAAAGAACAGGTCGCGATGTGGAGTGAAACCTTCTCCCATCTTTGGCATCGCACCAATCTGTTACCTGAAAATCCTCCCCAATACCGTGAGGTTTTCATTGAATATGCAAAGGGGATTGGTACATTAATGAATAGGCTCTTGGAATTGCTATCCCAAGGGCTTGGCCTGGAGAAAGATTGCATGCAGAAGAAGCTGGGTGAGAATCCCACTCTAAAAGCTCAAGCAAACTACTACCCACCATGTCCTGACCCTGAGCTCACACTTGGAGTCTTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

132

Amino Acids

15.24

Weight (kDa)

6.3

Isoelectric Point (pI)

24.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25590
malus_domestica	MD16G1101600.v1.1 MD16G1101900.v1.1
prunus_persica	Prupe.8G011800_v2.0.a1
pyrus_communis	pycom16g08630
rosa_chinensis	RchiOBHm_Chr5g0016311
rosa_laevigata	RLG00000006792
rosa_multiflora	Rmu_co8454895.1_g000001 Rmu_sc0001762.1_g000036
rosa_roxburghii	Rroxscaffold_5G00374460
rosa_samantha	Rh1AG277500 Rh4AG318700 Rh4BG326800 Rh4CG342200 Rh4DG322000 Rh5CG136300
rosa_wichuraiana	Rw4G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccII	CGCG	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	56, 238
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	28, 94, 113, 218
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	4 cut(s)	88, 310, 335, 373
AluI	AGCT	4 cut(s)	88, 310, 335, 373
Alw21I	GWGCWC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	280
AseI	ATTAAT	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	375
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	284
BfaI	CTAG	1 cut(s)	394
BfmI	CTRYAG	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	70
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	2 cut(s)	89, 321
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	360
BseYI	CCCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	67
Bsp68I	TCGCGA	1 cut(s)	131
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	54, 203
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	369
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 307
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	282
BtgZI	GCGATG	2 cut(s)	146, 149
BtuMI	TCGCGA	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	55, 237
CviAII	CATG	2 cut(s)	298, 357
CviJI	RGCY	7 cut(s)	88, 253, 277, 282, 310, 335, 373
CviKI_1	RGCY	7 cut(s)	88, 253, 277, 282, 310, 335, 373
CviQI	GTAC	2 cut(s)	55, 237
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	301, 360
FaiI	YATR	4 cut(s)	15, 222, 299, 358
FatI	CATG	2 cut(s)	297, 356
FriOI	GRGCYC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	394
GsaI	CCCAGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	301, 360
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	3 cut(s)	109, 319, 384
HphI	GGTGA	1 cut(s)	326
Hpy188III	TCNNGA	3 cut(s)	106, 130, 362
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	54, 203
HpyCH4V	TGCA	3 cut(s)	224, 297, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 307
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	301, 360
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	8 cut(s)	65, 110, 195, 269, 296, 296, 375, 381
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	3 cut(s)	16, 53, 316
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	20, 260
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	3 cut(s)	113, 199, 201
MseI	TTAA	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	85, 307
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	301, 360
NruI	TCGCGA	1 cut(s)	131
NspI	RCATGY	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	109, 319
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PshBI	ATTAAT	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	282
RruI	TCGCGA	1 cut(s)	131
RsaI	GTAC	2 cut(s)	56, 238
RsaNI	GTAC	2 cut(s)	55, 237
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	104, 336
SmoI	CTYRAG	2 cut(s)	104, 336
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	2 cut(s)	20, 260
SspMI	CTAG	1 cut(s)	394
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	54, 203
TasI	AATT	2 cut(s)	20, 260
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	109, 319
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	202, 260
VspI	ATTAAT	1 cut(s)	242
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	1 cut(s)	394
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.