Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454895.1

Orthogroup ID

OG0014722

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1657

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454895.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

atgaaggtcaccgtggttactaggagtggtagagagcttttcaagggtggcctcgagctcagtgactctgccactgttgctgatctgcaggaggagatccataagcgatccaaaaagttctatccttcaaggcagcggcttactcttcctgtcaaaccaggatcaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009888 GO:0009922 GO:0009923 GO:0009987 GO:0010025 GO:0010026 GO:0010090 GO:0010091 GO:0010166 GO:0010927 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0032991 GO:0042175 GO:0042335 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0055114 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0090558 GO:0090626 GO:0098796 GO:0098827 GO:1901564 GO:1901568 GO:1901570 GO:1901576 GO:1902494 GO:1905499 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01110 ko01212 map00062 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

56

Amino Acids

6.3

Weight (kDa)

10.2

Isoelectric Point (pI)

75.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25590
malus_domestica	MD16G1101600.v1.1 MD16G1101900.v1.1
prunus_persica	Prupe.8G011800_v2.0.a1
pyrus_communis	pycom16g08630
rosa_chinensis	RchiOBHm_Chr5g0016311
rosa_laevigata	RLG00000006792
rosa_multiflora	Rmu_co8454895.1_g000001 Rmu_sc0001762.1_g000036
rosa_roxburghii	Rroxscaffold_5G00374460
rosa_samantha	Rh1AG277500 Rh4AG318700 Rh4BG326800 Rh4CG342200 Rh4DG322000 Rh5CG136300
rosa_wichuraiana	Rw4G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	2 cut(s)	91, 102
AgsI	TTSAA	2 cut(s)	43, 129
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	37, 58
AluI	AGCT	2 cut(s)	37, 58
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	91, 102
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	134, 137
BlsI	GCNGC	2 cut(s)	135, 138
Bme1390I	CCNGG	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	4 cut(s)	82, 96, 107, 161
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	2 cut(s)	91, 102
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	4 cut(s)	82, 96, 107, 161
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	13, 76
Bst6I	CTCTTC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	85, 99, 110, 164
BstMBI	GATC	4 cut(s)	82, 96, 107, 161
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	159
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	67, 72
CviJI	RGCY	4 cut(s)	37, 51, 58, 139
CviKI_1	RGCY	4 cut(s)	37, 51, 58, 139
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	4 cut(s)	84, 98, 109, 163
DpnII	GATC	4 cut(s)	82, 96, 107, 161
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	53
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	60
FaiI	YATR	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	134, 137
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	134, 137
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	134, 137
HaeIII	GGCC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	2 cut(s)	13, 76
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	82, 96, 107, 161
LpnPI	CCDG	3 cut(s)	74, 144, 162
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	7, 16, 62
MalI	GATC	4 cut(s)	84, 98, 109, 163
MboI	GATC	4 cut(s)	82, 96, 107, 161
MboII	GAAGA	1 cut(s)	137
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	2 cut(s)	62, 85
MspA1I	CMGCKG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	4 cut(s)	82, 96, 107, 161
NmuCI	GTSAC	2 cut(s)	7, 62
PaeR7I	CTCGAG	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	135, 138
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	157
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	60
SatI	GCNGC	2 cut(s)	134, 137
Sau3AI	GATC	4 cut(s)	82, 96, 107, 161
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	3 cut(s)	9, 39, 60
SfcI	CTRYAG	1 cut(s)	86
Sfr274I	CTCGAG	1 cut(s)	53
SgeI	CNNG	8 cut(s)	25, 33, 55, 65, 67, 101, 141, 161
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	13, 76
TaqI	TCGA	1 cut(s)	54
TauI	GCSGC	1 cut(s)	139
TscAI	CASTG	2 cut(s)	67, 79
TseFI	GTSAC	2 cut(s)	7, 62
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	2 cut(s)	7, 62
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	67, 79
XhoI	CTCGAG	1 cut(s)	53
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.