Rmu_sc0001762.1_g000036

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001762.1
OG0014722
Physical Location & Seq
Reverse (-)
120848 .. 122428
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001762.1_g000036.1.cds

Sequence Viewer

Length: 1089 bp
atgacatccttccaaatggccaatgacatcaaccctcttttccttcccccaaatttcattctcccagagagtcacaggccgcacctcactcagatttcaactttggattcaattctcatcattgacttgaatgactatgacactgacaacttggttcagaagatatcacaagcttctgaggtctatggctttttccagatcatcaaccatggagtacctgaggaaatatgcgatagaatgttgactgcctatacacaattcttcaaactttctgctgaagaaaaggcacagtacttcactacagatcacaccaagcaggtcaagtttttcaactacttcctcaagattcaaggtcaagaacaggtcaccatgtggagtgaaaccttctcccatctttggcatcgcaccaatctgttacctgaaaatcctccccaataccgtgaggttttcattgaatatgcaaaggagattggtacattgatgaataggctcttggaattgctatcccaagggcttggcctggagaaagattgcatgcagaagaagctggctgttcatactaatctcaatgcactcactgtgctcaagcaaacagagggagtgacgggccttcaagtcatcaaagatgggaaatgggttggtgttgatcccgtctccaatgcttttgttatcaatcttggtgatcaaattcagcccccgcgcgatccgacccaaaccaagcgacttgacccgcgttttctggccgttcccgacgtccgccgacgactagaccaacacaaatgtggttgccgccatctcgccgtcctccctctggtgctcgacggcaatggtaaccaccggaaagtggagatcggagcagccacagtcaacacgatcggatcaggccgaatattctcaatttctggcgactccttgaccgatccttctcagttttggaatctcctcctcctcttgatcatccccatacccgccttgaaggacgattttgtgtgcggagtgaaagatcaaggtttgaagatcagtggtgcacagcgaatctggagcttgattagacgacagagattgatcgatcttgcaagcgtgatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

362

Amino Acids

41.1

Weight (kDa)

6.56

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014722)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25590
malus_domestica MD16G1101600.v1.1 MD16G1101900.v1.1
prunus_persica Prupe.8G011800_v2.0.a1
pyrus_communis pycom16g08630
rosa_chinensis RchiOBHm_Chr5g0016311
rosa_laevigata RLG00000006792
rosa_multiflora Rmu_co8454895.1_g000001 Rmu_sc0001762.1_g000036
rosa_roxburghii Rroxscaffold_5G00374460
rosa_samantha Rh1AG277500 Rh4AG318700 Rh4BG326800 Rh4CG342200 Rh4DG322000 Rh5CG136300
rosa_wichuraiana Rw4G022550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 756
Acc36I ACCTGC 1 cut(s) 307
AccII CGCG 3 cut(s) 700, 702, 733
AciI CCGC 7 cut(s) 80, 698, 731, 757, 790, 969, 993
AclWI GGATC 4 cut(s) 641, 698, 886, 914
AcoI YGGCCR 2 cut(s) 18, 741
AcsI RAATTY 2 cut(s) 52, 687
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 753
AdeI CACNNNGTG 1 cut(s) 372
AfaI GTAC 3 cut(s) 216, 293, 475
AfiI CCNNNNNNNGG 3 cut(s) 396, 811, 844
AjnI CCWGG 1 cut(s) 519
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AleI CACNNNNGTG 1 cut(s) 780
AluBI AGCT 3 cut(s) 173, 547, 1044
AluI AGCT 3 cut(s) 173, 547, 1044
Alw21I GWGCWC 3 cut(s) 585, 819, 1030
Alw26I GTCTC 1 cut(s) 658
Alw44I GTGCAC 1 cut(s) 1026
AlwI GGATC 4 cut(s) 641, 698, 886, 914
AoxI GGCC 6 cut(s) 18, 77, 517, 607, 741, 883
ApaLI GTGCAC 1 cut(s) 1026
ApeKI GCWGC 1 cut(s) 857
ApoI RAATTY 2 cut(s) 52, 687
AspLEI GCGC 1 cut(s) 702
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 2 cut(s) 358, 692
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 1030
BalI TGGCCA 1 cut(s) 20
Bbv12I GWGCWC 3 cut(s) 585, 819, 1030
BbvI GCAGC 1 cut(s) 869
BccI CCATC 3 cut(s) 399, 620, 801
BceAI ACGGC 3 cut(s) 728, 785, 838
BciT130I CCWGG 1 cut(s) 521
BclI TGATCA 2 cut(s) 682, 954
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 2 cut(s) 767, 1087
BfmI CTRYAG 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 3 cut(s) 80, 790, 858
BlsI GCNGC 3 cut(s) 81, 791, 859
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 607
BmrFI CCNGG 1 cut(s) 521
BmsI GCATC 1 cut(s) 409
BpmI CTGGAG 2 cut(s) 542, 1060
BpuEI CTTGAG 2 cut(s) 326, 569
Bsa29I ATCGAT 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 753
BsaJI CCNNGG 2 cut(s) 208, 508
BsaWI WCCGGW 1 cut(s) 837
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 811, 844
Bse21I CCTNAGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 832
BseBI CCWGG 1 cut(s) 521
BseCI ATCGAT 1 cut(s) 1068
BseDI CCNNGG 2 cut(s) 208, 508
BseGI GGATG 2 cut(s) 5, 957
BseLI CCNNNNNNNGG 3 cut(s) 396, 811, 844
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 4 cut(s) 104, 168, 210, 941
BseRI GAGGAG 3 cut(s) 932, 935, 938
BseSI GKGCMC 1 cut(s) 1030
BseXI GCAGC 1 cut(s) 869
Bsh1236I CGCG 3 cut(s) 700, 702, 733
Bsh1285I CGRYCG 1 cut(s) 876
BshFI GGCC 6 cut(s) 20, 79, 519, 609, 743, 885
BshVI ATCGAT 1 cut(s) 1068
BsiEI CGRYCG 1 cut(s) 876
BsiHKAI GWGCWC 3 cut(s) 585, 819, 1030
BsiSI CCGG 1 cut(s) 838
BslI CCNNNNNNNGG 3 cut(s) 396, 811, 844
BsmAI GTCTC 1 cut(s) 658
BsmBI CGTCTC 1 cut(s) 658
BsnI GGCC 6 cut(s) 20, 79, 519, 609, 743, 885
Bsp1286I GDGCHC 3 cut(s) 585, 819, 1030
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 7 cut(s) 80, 698, 731, 757, 790, 969, 993
BspANI GGCC 6 cut(s) 20, 79, 519, 609, 743, 885
BspCNI CTCAG 4 cut(s) 103, 169, 211, 940
BspDI ATCGAT 1 cut(s) 1068
BspFNI CGCG 3 cut(s) 700, 702, 733
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 4 cut(s) 641, 698, 886, 914
BsrDI GCAATG 1 cut(s) 832
BssECI CCNNGG 2 cut(s) 208, 508
BssNI GRCGYC 1 cut(s) 753
BssT1I CCWWGG 2 cut(s) 208, 508
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 4 cut(s) 291, 440, 580, 865
BstACI GRCGYC 1 cut(s) 753
BstC8I GCNNGC 3 cut(s) 536, 549, 1078
BstDEI CTNAG 4 cut(s) 90, 177, 219, 927
BstDSI CCRYGG 1 cut(s) 208
BstEII GGTNACC 2 cut(s) 364, 830
BstF5I GGATG 2 cut(s) 5, 957
BstFNI CGCG 3 cut(s) 700, 702, 733
BstHHI GCGC 1 cut(s) 702
BstMAI GTCTC 1 cut(s) 658
BstMCI CGRYCG 1 cut(s) 876
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstNI CCWGG 1 cut(s) 521
BstNSI RCATGY 1 cut(s) 538
BstPI GGTNACC 2 cut(s) 364, 830
BstSCI CCNGG 1 cut(s) 519
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 1030
BstUI CGCG 3 cut(s) 700, 702, 733
BstV1I GCAGC 1 cut(s) 869
BstXI CCANNNNNNTGG 1 cut(s) 515
Bsu15I ATCGAT 1 cut(s) 1068
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 6 cut(s) 20, 79, 519, 609, 743, 885
BsuTUI ATCGAT 1 cut(s) 1068
BtgI CCRYGG 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 2 cut(s) 5, 957
BtsIMutI CAGTG 3 cut(s) 141, 576, 1027
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 536, 549, 1078
CfoI GCGC 1 cut(s) 702
Cfr13I GGNCC 1 cut(s) 607
ClaI ATCGAT 1 cut(s) 1068
Csp6I GTAC 3 cut(s) 215, 292, 474
CviAII CATG 3 cut(s) 209, 370, 535
CviQI GTAC 3 cut(s) 215, 292, 474
DdeI CTNAG 4 cut(s) 90, 177, 219, 927
DraIII CACNNNGTG 1 cut(s) 372
EaeI YGGCCR 2 cut(s) 18, 741
EciI GGCGGA 1 cut(s) 746
Eco130I CCWWGG 2 cut(s) 208, 508
Eco32I GATATC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 297
Eco81I CCTNAGG 1 cut(s) 219
Eco91I GGTNACC 2 cut(s) 364, 830
EcoO65I GGTNACC 2 cut(s) 364, 830
EcoRII CCWGG 1 cut(s) 519
EcoRV GATATC 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 208, 508
ErhI CCWWGG 2 cut(s) 208, 508
Esp3I CGTCTC 1 cut(s) 658
FaeI CATG 3 cut(s) 212, 373, 538
FatI CATG 3 cut(s) 208, 369, 534
FauI CCCGC 3 cut(s) 705, 738, 976
FbaI TGATCA 2 cut(s) 682, 954
Fnu4HI GCNGC 3 cut(s) 80, 790, 858
FokI GGATG 1 cut(s) 944
Fsp4HI GCNGC 3 cut(s) 80, 790, 858
FspBI CTAG 2 cut(s) 767, 1087
GlaI GCGC 1 cut(s) 701
GluI GCNGC 3 cut(s) 80, 790, 858
GsuI CTGGAG 2 cut(s) 542, 1060
HaeIII GGCC 6 cut(s) 20, 79, 519, 609, 743, 885
HapII CCGG 1 cut(s) 838
HhaI GCGC 1 cut(s) 702
Hin1I GRCGYC 1 cut(s) 753
Hin1II CATG 3 cut(s) 212, 373, 538
Hin6I GCGC 1 cut(s) 700
HinP1I GCGC 1 cut(s) 700
HincII GTYRAC 2 cut(s) 243, 868
HindII GTYRAC 2 cut(s) 243, 868
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 6 cut(s) 70, 107, 346, 908, 937, 1035
HpaII CCGG 1 cut(s) 838
HphI GGTGA 2 cut(s) 358, 692
Hpy166II GTNNAC 3 cut(s) 243, 868, 1028
Hpy188I TCNGA 6 cut(s) 93, 159, 178, 708, 854, 878
Hpy188III TCNNGA 6 cut(s) 196, 343, 356, 749, 952, 1039
Hpy8I GTNNAC 3 cut(s) 243, 868, 1028
Hpy99I CGWCG 3 cut(s) 755, 765, 824
HpyAV CCTTC 6 cut(s) 19, 53, 394, 620, 933, 970
HpyCH4III ACNGT 4 cut(s) 291, 440, 580, 865
HpyCH4IV ACGT 1 cut(s) 753
HpyCH4V TGCA 6 cut(s) 461, 534, 538, 572, 1028, 1076
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 4 cut(s) 90, 177, 219, 927
HpySE526I ACGT 1 cut(s) 753
Hsp92I GRCGYC 1 cut(s) 753
Hsp92II CATG 3 cut(s) 212, 373, 538
HspAI GCGC 1 cut(s) 700
Ksp22I TGATCA 2 cut(s) 682, 954
LmnI GCTCC 2 cut(s) 854, 1041
Lsp1109I GCAGC 1 cut(s) 869
LweI GCATC 1 cut(s) 409
MaeI CTAG 2 cut(s) 767, 1087
MaeII ACGT 1 cut(s) 753
MaeIII GTNAC 5 cut(s) 71, 364, 414, 601, 830
MboII GAAGA 5 cut(s) 172, 253, 290, 553, 1027
MhlI GDGCHC 3 cut(s) 585, 819, 1030
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 6 cut(s) 52, 111, 257, 497, 687, 897
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 2 cut(s) 79, 902
MmeI TCCRAC 1 cut(s) 731
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 780
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 1 cut(s) 838
MspR9I CCNGG 1 cut(s) 521
MvaI CCWGG 1 cut(s) 521
MvnI CGCG 3 cut(s) 700, 702, 733
MwoI GCNNNNNNNGC 1 cut(s) 544
NcoI CCATGG 1 cut(s) 208
NlaIII CATG 3 cut(s) 212, 373, 538
NmuCI GTSAC 3 cut(s) 71, 364, 601
NspI RCATGY 1 cut(s) 538
OliI CACNNNNGTG 1 cut(s) 780
PaeI GCATGC 1 cut(s) 538
PfeI GAWTC 4 cut(s) 107, 346, 937, 1035
PkrI GCNGC 3 cut(s) 81, 791, 859
Ple19I CGATCG 1 cut(s) 876
PleI GAGTC 2 cut(s) 78, 902
PpsI GAGTC 2 cut(s) 78, 902
Psp6I CCWGG 1 cut(s) 519
PspEI GGTNACC 2 cut(s) 364, 830
PspGI CCWGG 1 cut(s) 519
PspPI GGNCC 1 cut(s) 607
PvuI CGATCG 1 cut(s) 876
RsaI GTAC 3 cut(s) 216, 293, 475
RsaNI GTAC 3 cut(s) 215, 292, 474
RseI CAYNNNNRTG 1 cut(s) 780
SatI GCNGC 3 cut(s) 80, 790, 858
Sau96I GGNCC 1 cut(s) 607
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 2 cut(s) 79, 902
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 3 cut(s) 585, 819, 1030
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 2 cut(s) 341, 584
SmoI CTYRAG 2 cut(s) 341, 584
SphI GCATGC 1 cut(s) 538
Sse9I AATT 6 cut(s) 52, 111, 257, 497, 687, 897
SsiI CCGC 7 cut(s) 80, 698, 731, 757, 790, 969, 993
SspI AATATT 1 cut(s) 891
SspMI CTAG 2 cut(s) 767, 1087
StyD4I CCNGG 1 cut(s) 519
StyI CCWWGG 2 cut(s) 208, 508
TaaI ACNGT 4 cut(s) 291, 440, 580, 865
TaiI ACGT 1 cut(s) 756
TaqI TCGA 2 cut(s) 819, 1068
TaqII GACCGA 1 cut(s) 932
TasI AATT 6 cut(s) 52, 111, 257, 497, 687, 897
TatI WGTACW 1 cut(s) 291
TauI GCSGC 2 cut(s) 82, 792
TfiI GAWTC 4 cut(s) 107, 346, 937, 1035
TscAI CASTG 3 cut(s) 148, 583, 1027
TseFI GTSAC 3 cut(s) 71, 364, 601
TseI GCWGC 1 cut(s) 857
Tsp45I GTSAC 3 cut(s) 71, 364, 601
TspDTI ATGAA 4 cut(s) 46, 439, 497, 545
TspRI CASTG 3 cut(s) 148, 583, 1027
VneI GTGCAC 1 cut(s) 1026
XapI RAATTY 2 cut(s) 52, 687
XceI RCATGY 1 cut(s) 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 779
XspI CTAG 2 cut(s) 767, 1087
ZraI GACGTC 1 cut(s) 754
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.