Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010962

Physical Location & Seq

Genomic Coordinates Reverse (-)

12036710 .. 12038929

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G087400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCAGCAGCATCAGCAGTAGGAGCCCCAACCTGTCACCGGCTCCACTGCCTCCTCCACCGCCCATCACCGCCATCTTCTTCCTTCTCTCTTTTCCTCAAACCCCTTCTCGTCTCCACCACCACCGTCTCCACGACTCCATTCATCCCACGCCGTAGAATTATCTCTCCTTCCCTTCATTCCCTCCCTTCTCGTCCTCTCCTCTTCTGCCACTCTTCCACTCTCACCCACTCTCCTCCTGCCCCCAAAGCGTCTTTACAAGAAGCAGAAGAAACCCAACAACTTGAAATTCCAGAAGATGATGATAACGATAATGGCGAGGAAGCCGAGATTGAAATTGAGAACTTGGATAATAAGGAAAATGCCCAAGTGGGTTTGGAGTCTTCTTCGGGTTTTAAGAGAGATGGGGTCAAGCCACCAAGCCTTACGCTGAAAGAAAAGAAGGAACTTGCGTCCTATGCTCACAGCTTGGGGAAGAAGCTGAAGTCCCAGTTGGTGGGAAAGTCCGGTGTTACAGCCAGTGTTGCAGCTTCTTTTGTAGAGAATCTTGAATCCAACGAGCTTCTCAAGGTAAAAATACATGGAACATGCCCGGGAGAGCTAGACGATGTGGTGAAACAATTGGAGGAAGCAACTGGTTCAGTTATTGTTGGTCAAATTGGTAGAACAGTGATTCTATACAGGCCCAGCCTCACCAAGTTGAAAGCAGAGGAGAAAAGGCAGCAGATGCGGAAGGTATTTATGAGACGAAAGACGTATTCGAGACCCACATCGGTGGAATTTCAGAAAAAAGGAGAAAGACCAAGAACGTTTGGGCGTGATAGCCGAGGAAGAACTAGGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

282

Amino Acids

30.97

Weight (kDa)

9.41

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21350 AT4G39040 AT4G39040
fragaria_vesca	FvH4_2g10110
malus_domestica	MD05G1057700.v1.1 MD10G1065400.v1.1
prunus_persica	Prupe.8G087400_v2.0.a1
pyrus_communis	pycom05g04880
rosa_chinensis	RchiOBHm_Chr6g0267071
rosa_laevigata	RLG00000014044
rosa_multiflora	Rmu_co8165610.1_g000001 Rmu_sc0002938.1_g000055 Rmu_ssc0000388.1_g000005
rosa_roxburghii	Rroxscaffold_7G00201170
rosa_rugosa	Rorug06G0028900
rosa_samantha	Rh6AG150500 Rh6BG151300 Rh6CG146700 Rh6DG135400
rosa_wichuraiana	Rw6G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	496
AciI	CCGC	3 cut(s)	61, 71, 730
AclI	AACGTT	1 cut(s)	809
AcsI	RAATTY	2 cut(s)	288, 779
AcuI	CTGAAG	1 cut(s)	503
AfiI	CCNNNNNNNGG	2 cut(s)	39, 496
AgsI	TTSAA	4 cut(s)	287, 335, 551, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AleI	CACNNNNGTG	1 cut(s)	773
AluBI	AGCT	5 cut(s)	468, 481, 530, 562, 601
AluI	AGCT	5 cut(s)	468, 481, 530, 562, 601
Alw26I	GTCTC	4 cut(s)	118, 133, 739, 757
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	1 cut(s)	683
ApeKI	GCWGC	4 cut(s)	5, 8, 527, 721
ApoI	RAATTY	2 cut(s)	288, 779
AspS9I	GGNCC	1 cut(s)	684
AsuC2I	CCSGG	2 cut(s)	593, 594
AsuHPI	GGTGA	5 cut(s)	29, 60, 217, 625, 685
AvaI	CYCGRG	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	17, 20, 539, 733
BccI	CCATC	3 cut(s)	73, 82, 398
BceAI	ACGGC	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	593, 594
BcoDI	GTCTC	4 cut(s)	118, 133, 739, 757
BfaI	CTAG	2 cut(s)	602, 837
BisI	GCNGC	4 cut(s)	6, 9, 528, 722
BlsI	GCNGC	4 cut(s)	7, 10, 529, 723
Bme1390I	CCNGG	2 cut(s)	593, 594
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	2 cut(s)	25, 44
BmrFI	CCNGG	2 cut(s)	593, 594
BmrI	ACTGGG	1 cut(s)	484
BmsI	GCATC	2 cut(s)	20, 717
BmuI	ACTGGG	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	593, 594
BsaI	GGTCTC	1 cut(s)	757
BsaJI	CCNNGG	2 cut(s)	592, 826
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 496
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	3 cut(s)	490, 519, 640
BseDI	CCNNGG	2 cut(s)	592, 826
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	39, 496
BseNI	ACTGG	3 cut(s)	490, 519, 640
BseRI	GAGGAG	4 cut(s)	44, 191, 225, 725
BseXI	GCAGC	4 cut(s)	17, 20, 539, 733
BseYI	CCCAGC	1 cut(s)	686
BshFI	GGCC	1 cut(s)	685
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	3 cut(s)	40, 507, 593
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	2 cut(s)	39, 496
BsmAI	GTCTC	4 cut(s)	118, 133, 739, 757
BsmBI	CGTCTC	3 cut(s)	118, 133, 739
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	685
Bso31I	GGTCTC	1 cut(s)	757
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	61, 71, 730
BspANI	GGCC	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	25, 44
BspTNI	GGTCTC	1 cut(s)	757
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	490, 519, 640
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	592, 826
Bst4CI	ACNGT	2 cut(s)	127, 670
Bst6I	CTCTTC	2 cut(s)	209, 220
BstAPI	GCANNNNNTGC	1 cut(s)	727
BstF5I	GGATG	1 cut(s)	144
BstMAI	GTCTC	4 cut(s)	118, 133, 739, 757
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 23, 248, 458, 524, 727
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	2 cut(s)	591, 592
BstV1I	GCAGC	4 cut(s)	17, 20, 539, 733
BstV2I	GAAGAC	1 cut(s)	375
BstXI	CCANNNNNNTGG	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	685
BtsCI	GGATG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	3 cut(s)	46, 526, 675
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	684
Cfr9I	CCCGGG	1 cut(s)	592
CseI	GACGC	2 cut(s)	240, 441
CviAII	CATG	2 cut(s)	581, 588
Eam1104I	CTCTTC	2 cut(s)	209, 220
EarI	CTCTTC	2 cut(s)	209, 220
Eco24I	GRGCYC	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	28
Esp3I	CGTCTC	3 cut(s)	118, 133, 739
FaeI	CATG	2 cut(s)	584, 591
FaiI	YATR	5 cut(s)	459, 582, 589, 679, 743
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	580, 587
Fnu4HI	GCNGC	4 cut(s)	6, 9, 528, 722
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	4 cut(s)	6, 9, 528, 722
FspBI	CTAG	2 cut(s)	602, 837
GluI	GCNGC	4 cut(s)	6, 9, 528, 722
GsaI	CCCAGC	1 cut(s)	690
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	3 cut(s)	40, 507, 593
HgaI	GACGC	2 cut(s)	240, 441
Hin1II	CATG	2 cut(s)	584, 591
HinfI	GANTC	5 cut(s)	136, 380, 544, 551, 673
HpaII	CCGG	3 cut(s)	40, 507, 593
HphI	GGTGA	5 cut(s)	29, 60, 217, 625, 685
Hpy188I	TCNGA	1 cut(s)	786
Hpy188III	TCNNGA	3 cut(s)	293, 548, 762
HpyAV	CCTTC	7 cut(s)	94, 116, 180, 185, 198, 436, 727
HpyCH4III	ACNGT	2 cut(s)	127, 670
HpyCH4IV	ACGT	2 cut(s)	755, 809
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 23, 248, 458, 524, 727
HpySE526I	ACGT	2 cut(s)	755, 809
Hsp92II	CATG	2 cut(s)	584, 591
LmnI	GCTCC	2 cut(s)	23, 48
Lsp1109I	GCAGC	4 cut(s)	17, 20, 539, 733
LweI	GCATC	2 cut(s)	20, 717
MaeI	CTAG	2 cut(s)	602, 837
MaeII	ACGT	2 cut(s)	755, 809
MaeIII	GTNAC	2 cut(s)	35, 511
MfeI	CAATTG	1 cut(s)	620
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	6 cut(s)	159, 288, 336, 620, 657, 779
MlyI	GAGTC	2 cut(s)	130, 389
MmeI	TCCRAC	1 cut(s)	579
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	773
MspI	CCGG	3 cut(s)	40, 507, 593
MspR9I	CCNGG	2 cut(s)	593, 594
MunI	CAATTG	1 cut(s)	620
MwoI	GCNNNNNNNGC	6 cut(s)	14, 23, 248, 458, 524, 727
NciI	CCSGG	2 cut(s)	593, 594
NlaIII	CATG	2 cut(s)	584, 591
NlaIV	GGNNCC	2 cut(s)	25, 44
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	591
OliI	CACNNNNGTG	1 cut(s)	773
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	544, 551, 673
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	4 cut(s)	7, 10, 529, 723
PleI	GAGTC	2 cut(s)	130, 388
PpsI	GAGTC	2 cut(s)	130, 388
Psp1406I	AACGTT	1 cut(s)	809
PspFI	CCCAGC	1 cut(s)	686
PspN4I	GGNNCC	2 cut(s)	25, 44
PspPI	GGNCC	1 cut(s)	684
RseI	CAYNNNNRTG	1 cut(s)	773
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	4 cut(s)	6, 9, 528, 722
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	2 cut(s)	130, 389
ScrFI	CCNGG	2 cut(s)	593, 594
SduI	GDGCHC	1 cut(s)	28
SfaNI	GCATC	2 cut(s)	20, 717
SmaI	CCCGGG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	773
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	6 cut(s)	159, 288, 336, 620, 657, 779
SsiI	CCGC	3 cut(s)	61, 71, 730
SspMI	CTAG	2 cut(s)	602, 837
StyD4I	CCNGG	2 cut(s)	591, 592
TaaI	ACNGT	2 cut(s)	127, 670
TaiI	ACGT	2 cut(s)	758, 812
TaqI	TCGA	1 cut(s)	761
TasI	AATT	6 cut(s)	159, 288, 336, 620, 657, 779
TfiI	GAWTC	3 cut(s)	544, 551, 673
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	3 cut(s)	53, 526, 675
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	5, 8, 527, 721
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	133, 167
TspMI	CCCGGG	1 cut(s)	592
TspRI	CASTG	3 cut(s)	53, 526, 675
Van91I	CCANNNNNTGG	1 cut(s)	496
XapI	RAATTY	2 cut(s)	288, 779
XceI	RCATGY	1 cut(s)	591
XmaI	CCCGGG	1 cut(s)	592
XspI	CTAG	2 cut(s)	602, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.