Rorug06G0028900

CRS1_YhbY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010962
Physical Location & Seq
Reverse (-)
3445695 .. 3446003
309 bp
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UTR
Exon/CDS
Intron
Rorug06G0028900.1

Sequence Viewer

Length: 309 bp
ATGGGTATCAAATTGATGGGTATAGCTCATGCCAAGCAGAAACTACAGCGAACCCTTTCAGCGAGGTTGGGAGCAGTTACAGACACTACGGGTATTGATGTCCCGAAAGGCCACTTTGCTGTTTATGTTGGAGAAGGCAAGAAGAAGAGGTTTGTGATTCCGATATCGTATTTGAACCATCCTTTGTTTCTAGACTTGTTGAACAAGGCTCAGGAAGAGTTTGGATATGATCATCCTACAGGTGGTCTTACAATTCCATGCAGTGAAGACTACTTCATTACCCTAACTTCGGCTCTAAACTCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

102

Amino Acids

11.16

Weight (kDa)

8.76

Isoelectric Point (pI)

18.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 98 2.2e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21350 AT4G39040 AT4G39040
fragaria_vesca FvH4_2g10110
malus_domestica MD05G1057700.v1.1 MD10G1065400.v1.1
prunus_persica Prupe.8G087400_v2.0.a1
pyrus_communis pycom05g04880
rosa_chinensis RchiOBHm_Chr6g0267071
rosa_laevigata RLG00000014044
rosa_multiflora Rmu_co8165610.1_g000001 Rmu_sc0002938.1_g000055 Rmu_ssc0000388.1_g000005
rosa_roxburghii Rroxscaffold_7G00201170
rosa_rugosa Rorug06G0028900
rosa_samantha Rh6AG150500 Rh6BG151300 Rh6CG146700 Rh6DG135400
rosa_wichuraiana Rw6G013040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 242, 289
AgsI TTSAA 2 cut(s) 175, 202
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AoxI GGCC 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 273
BccI CCATC 2 cut(s) 10, 186
BclI TGATCA 1 cut(s) 229
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 44, 237
BpiI GAAGAC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 289
BseGI GGATG 2 cut(s) 178, 232
BseLI CCNNNNNNNGG 2 cut(s) 242, 289
BseMII CTCAG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 292
BshFI GGCC 1 cut(s) 111
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 242, 289
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 223
BssMI GATC 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 140, 210
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 178, 232
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstSFI CTRYAG 2 cut(s) 44, 237
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 178, 232
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 268
CviAII CATG 2 cut(s) 29, 258
CviJI RGCY 4 cut(s) 26, 111, 209, 293
CviKI_1 RGCY 4 cut(s) 26, 111, 209, 293
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 140, 210
EarI CTCTTC 2 cut(s) 140, 210
Eco32I GATATC 1 cut(s) 165
EcoRV GATATC 1 cut(s) 165
FaeI CATG 2 cut(s) 32, 261
FaiI YATR 6 cut(s) 23, 30, 126, 228, 259, 307
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 28, 257
FbaI TGATCA 1 cut(s) 229
FokI GGATG 2 cut(s) 165, 219
FspBI CTAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 2 cut(s) 32, 261
HinfI GANTC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 3 cut(s) 103, 191, 212
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 261
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 2 cut(s) 32, 261
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 2 cut(s) 197, 225
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 4 cut(s) 154, 157, 227, 278
MluCI AATT 2 cut(s) 11, 252
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 2 cut(s) 57, 141
MroXI GAANNNNTTC 1 cut(s) 55
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 32, 261
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 229
SetI ASST 4 cut(s) 28, 68, 152, 244
SfcI CTRYAG 2 cut(s) 44, 237
Sse9I AATT 2 cut(s) 11, 252
SspMI CTAG 1 cut(s) 191
TasI AATT 2 cut(s) 11, 252
TfiI GAWTC 1 cut(s) 157
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 1 cut(s) 268
XbaI TCTAGA 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.