Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003149

Physical Location & Seq

Genomic Coordinates Reverse (-)

12887066 .. 12888737

Gene Structure 1672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G096700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAATCTTGCAGCATCAATATGCAGTAGATTGGGTGTCAAGCACCTGGTTTCGAATACTCCTGTGTACAGCAGAGCTTCTGATGTCACGGCAGAAGGATTGAGTTTGACATTTAGGCGCTGGGCTACTAAAAAATCTGCTGGATCCACAAAGAATGGCCGAGACTCAAACCCTAAGTTTCTTGGAGTGAAGAAATTTGGTGGAGAGAGAGTGATACCTGGAAACATCATTGTTCGCCAGAGGGGCACCCGATTTCATCCTGGAAATTATGTTGGCTTAGGGAAGGATCACACCCTTTTTGCTCTGAAAGAAGGCTGTGTAAAATTTGAACACCACAAGCTCAGTGGACGCAAGTGGGTGCATGTCGTGCCCAAGGAAGGTCACATGCTTCACCCTGTCTATGCAGATGTTGCAACCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

141

Amino Acids

15.42

Weight (kDa)

10.33

Isoelectric Point (pI)

21.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16930 AT2G16930 AT2G16930 AT2G16930 AT5G15220 AT5G15220
fragaria_vesca	FvH4_2g08800 FvH4_2g08800 FvH4_2g08800 FvH4_2g08800 FvH4_2g08800 FvH4_4g12570
malus_domestica	MD07G1108700.v1.1 MD10G1076100.v1.1
prunus_persica	Prupe.8G096700_v2.0.a1
pyrus_communis	pycom07g09320
rosa_chinensis	RchiOBHm_Chr6g0264271 RchiOBHm_Chr7g0222081
rosa_laevigata	RLG00000002101 RLG00000014273
rosa_multiflora	Rmu_co8337275.1_g000001 Rmu_sc0001971.1_g000011 Rmu_sc0010595.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431670 Rroxscaffold_3G00237480
rosa_rugosa	Rorug06G0011500 Rorug07G0205200
rosa_samantha	Rh6AG131100 Rh6BG128100 Rh6CG126500 Rh6DG113600 Rh7AG345900 Rh7BG336300 Rh7CG363500 Rh7DG344000
rosa_wichuraiana	Rw6G011450 Rw7G029320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AclWI	GGATC	3 cut(s)	138, 151, 294
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	194, 323
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	45, 217, 259
AluBI	AGCT	2 cut(s)	77, 340
AluI	AGCT	2 cut(s)	77, 340
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	3 cut(s)	138, 151, 294
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	194, 323
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	383
AsuII	TTCGAA	1 cut(s)	53
BaeGI	GKGCMC	2 cut(s)	248, 372
BamHI	GGATCC	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	3 cut(s)	47, 219, 261
BcoDI	GTCTC	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	47, 219, 261
BmiI	GGNNCC	2 cut(s)	145, 247
BmrFI	CCNGG	3 cut(s)	47, 219, 261
BmsI	GCATC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
BseBI	CCWGG	3 cut(s)	47, 219, 261
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	1 cut(s)	355
BseSI	GKGCMC	2 cut(s)	248, 372
BseXI	GCAGC	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	248, 372
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	143, 286
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	145, 247
BspPI	GGATC	3 cut(s)	138, 151, 294
BspT104I	TTCGAA	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	143, 286
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	47, 219, 261
BstAPI	GCANNNNNTGC	2 cut(s)	367, 410
BstAUI	TGTACA	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	53
BstDEI	CTNAG	4 cut(s)	174, 277, 341, 420
BstF5I	GGATG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	146, 289
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	143, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 367, 410
BstNI	CCWGG	3 cut(s)	47, 219, 261
BstNSI	RCATGY	2 cut(s)	365, 388
BstSCI	CCNGG	3 cut(s)	45, 217, 259
BstSLI	GKGCMC	2 cut(s)	248, 372
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	120
CseI	GACGC	1 cut(s)	357
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	67
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	2 cut(s)	362, 385
CviJI	RGCY	6 cut(s)	77, 125, 159, 276, 315, 340
CviKI_1	RGCY	6 cut(s)	77, 125, 159, 276, 315, 340
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	4 cut(s)	174, 277, 341, 420
DpnI	GATC	2 cut(s)	145, 288
DpnII	GATC	2 cut(s)	143, 286
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	45, 217, 259
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	365, 388
FaiI	YATR	5 cut(s)	22, 270, 363, 386, 402
FatI	CATG	2 cut(s)	361, 384
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	12
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	159
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	365, 388
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	4, 164
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	67, 347
Hpy188I	TCNGA	2 cut(s)	82, 306
Hpy8I	GTNNAC	2 cut(s)	67, 347
HpyAV	CCTTC	4 cut(s)	89, 277, 305, 371
HpyCH4V	TGCA	5 cut(s)	11, 24, 361, 404, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 367, 410
HpyF3I	CTNAG	4 cut(s)	174, 277, 341, 420
Hsp92II	CATG	2 cut(s)	365, 388
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	143, 286
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	23
MabI	ACCWGGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	85, 380
MalI	GATC	2 cut(s)	145, 288
MboI	GATC	2 cut(s)	143, 286
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	2 cut(s)	248, 372
MluCI	AATT	3 cut(s)	194, 265, 323
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	19
MspR9I	CCNGG	3 cut(s)	47, 219, 261
MvaI	CCWGG	3 cut(s)	47, 219, 261
MwoI	GCNNNNNNNGC	3 cut(s)	243, 367, 410
NdeII	GATC	2 cut(s)	143, 286
NlaIII	CATG	2 cut(s)	365, 388
NlaIV	GGNNCC	2 cut(s)	145, 247
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	2 cut(s)	85, 380
NspI	RCATGY	2 cut(s)	365, 388
NspV	TTCGAA	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	45, 217, 259
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	3 cut(s)	45, 217, 259
PspN4I	GGNNCC	2 cut(s)	145, 247
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	19
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	143, 286
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	3 cut(s)	47, 219, 261
SduI	GDGCHC	2 cut(s)	248, 372
SetI	ASST	5 cut(s)	48, 79, 220, 342, 382
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	194, 265, 323
StyD4I	CCNGG	3 cut(s)	45, 217, 259
StyI	CCWWGG	1 cut(s)	372
TaqI	TCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	194, 265, 323
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	85, 380
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	85, 380
TspDTI	ATGAA	2 cut(s)	17, 245
TspRI	CASTG	1 cut(s)	349
XapI	RAATTY	2 cut(s)	194, 323
XceI	RCATGY	2 cut(s)	365, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.