Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8337275.1

Orthogroup ID

OG0003149

Physical Location & Seq

Genomic Coordinates Reverse (-)

383 .. 995

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8337275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

tgccaaagattgaatataaagcatctcgttaccagtactcctgtttacagcagtgcctctgatgtcacgggggaaggattgagtttgatgttcaggcgctgggctactaaaaaacaagctggatcctcaaagaatgggcgagactctttacctaagaatcttggagtgaagaaatttggtggagagagagtgatacctggaaacatcattgttcgccagaggggcacccgattccatcctggaaattatgttgggttagggaaggatcacaccctttttgctctgaaagaaggcaccgtaaagtttgaaaagcacaagctcagtggacgtaagtgggtgcatgtagagcccaaagaaggccatgtgcttcaccctatatatgcgaatgttgcagcagctgagacggtgaagacagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

139

Amino Acids

15.36

Weight (kDa)

10.29

Isoelectric Point (pI)

24.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16930 AT2G16930 AT2G16930 AT2G16930 AT5G15220 AT5G15220
fragaria_vesca	FvH4_2g08800 FvH4_2g08800 FvH4_2g08800 FvH4_2g08800 FvH4_2g08800 FvH4_4g12570
malus_domestica	MD07G1108700.v1.1 MD10G1076100.v1.1
prunus_persica	Prupe.8G096700_v2.0.a1
pyrus_communis	pycom07g09320
rosa_chinensis	RchiOBHm_Chr6g0264271 RchiOBHm_Chr7g0222081
rosa_laevigata	RLG00000002101 RLG00000014273
rosa_multiflora	Rmu_co8337275.1_g000001 Rmu_sc0001971.1_g000011 Rmu_sc0010595.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431670 Rroxscaffold_3G00237480
rosa_rugosa	Rorug06G0011500 Rorug07G0205200
rosa_samantha	Rh6AG131100 Rh6BG128100 Rh6CG126500 Rh6DG113600 Rh7AG345900 Rh7BG336300 Rh7CG363500 Rh7DG344000
rosa_wichuraiana	Rw6G011450 Rw7G029320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 293
AclWI	GGATC	3 cut(s)	117, 130, 273
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	13, 308
AjnI	CCWGG	2 cut(s)	196, 238
AluBI	AGCT	3 cut(s)	119, 319, 398
AluI	AGCT	3 cut(s)	119, 319, 398
Alw26I	GTCTC	2 cut(s)	135, 395
AlwI	GGATC	3 cut(s)	117, 130, 273
AlwNI	CAGNNNCTG	2 cut(s)	99, 398
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	392, 395
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	362, 418
BaeGI	GKGCMC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	224, 293
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	404, 407
BccI	CCATC	1 cut(s)	243
BciT130I	CCWGG	2 cut(s)	198, 240
BcoDI	GTCTC	2 cut(s)	135, 395
BfoI	RGCGCY	1 cut(s)	100
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	393, 396
BlsI	GCNGC	2 cut(s)	394, 397
BmcAI	AGTACT	1 cut(s)	37
Bme1390I	CCNGG	2 cut(s)	198, 240
BmiI	GGNNCC	3 cut(s)	124, 226, 295
BmrFI	CCNGG	2 cut(s)	198, 240
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	416
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	198, 240
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	334, 390
BseNI	ACTGG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	404, 407
BseYI	CCCAGC	1 cut(s)	99
BshFI	GGCC	1 cut(s)	360
BshNI	GGYRCC	2 cut(s)	224, 293
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	135, 395
BsmBI	CGTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	227, 351
Bsp143I	GATC	2 cut(s)	122, 265
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	333, 391
BspLI	GGNNCC	3 cut(s)	124, 226, 295
BspPI	GGATC	3 cut(s)	117, 130, 273
BspT107I	GGYRCC	2 cut(s)	224, 293
BsrI	ACTGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	122, 265
Bst2UI	CCWGG	2 cut(s)	198, 240
Bst4CI	ACNGT	3 cut(s)	298, 406, 415
BstDEI	CTNAG	3 cut(s)	153, 320, 399
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	125, 268
BstMAI	GTCTC	2 cut(s)	135, 395
BstMBI	GATC	2 cut(s)	122, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	222, 346, 389
BstNI	CCWGG	2 cut(s)	198, 240
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	196, 238
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	404, 407
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	58, 328
CaiI	CAGNNNCTG	2 cut(s)	99, 398
CfoI	GCGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	36
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	2 cut(s)	341, 362
CviJI	RGCY	6 cut(s)	104, 119, 319, 349, 360, 398
CviKI_1	RGCY	6 cut(s)	104, 119, 319, 349, 360, 398
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	3 cut(s)	153, 320, 399
DpnI	GATC	2 cut(s)	124, 267
DpnII	GATC	2 cut(s)	122, 265
Eco24I	GRGCYC	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	196, 238
EcoT38I	GRGCYC	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	2 cut(s)	344, 365
FaiI	YATR	7 cut(s)	17, 249, 342, 363, 377, 379, 381
FatI	CATG	2 cut(s)	340, 361
Fnu4HI	GCNGC	2 cut(s)	393, 396
FokI	GGATG	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	393, 396
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	393, 396
GsaI	CCCAGC	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	360
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	344, 365
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	143, 157, 231
HphI	GGTGA	2 cut(s)	362, 418
Hpy166II	GTNNAC	2 cut(s)	46, 326
Hpy188I	TCNGA	3 cut(s)	61, 285, 419
Hpy8I	GTNNAC	2 cut(s)	46, 326
HpyAV	CCTTC	4 cut(s)	68, 256, 284, 350
HpyCH4III	ACNGT	3 cut(s)	298, 406, 415
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	340, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	222, 346, 389
HpyF3I	CTNAG	3 cut(s)	153, 320, 399
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	2 cut(s)	344, 365
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	122, 265
Lsp1109I	GCAGC	2 cut(s)	404, 407
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	28, 64
MalI	GATC	2 cut(s)	124, 267
MboI	GATC	2 cut(s)	122, 265
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	2 cut(s)	227, 351
MluCI	AATT	2 cut(s)	173, 244
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	67, 136, 213
MspA1I	CMGCKG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	198, 240
MvaI	CCWGG	2 cut(s)	198, 240
MwoI	GCNNNNNNNGC	3 cut(s)	222, 346, 389
NdeII	GATC	2 cut(s)	122, 265
NlaIII	CATG	2 cut(s)	344, 365
NlaIV	GGNNCC	3 cut(s)	124, 226, 295
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	157, 231
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	394, 397
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	196, 238
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	196, 238
PspN4I	GGNNCC	3 cut(s)	124, 226, 295
PstNI	CAGNNNCTG	2 cut(s)	99, 398
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SatI	GCNGC	2 cut(s)	393, 396
Sau3AI	GATC	2 cut(s)	122, 265
ScaI	AGTACT	1 cut(s)	37
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	198, 240
SduI	GDGCHC	2 cut(s)	227, 351
SetI	ASST	6 cut(s)	121, 154, 199, 321, 331, 400
SfaNI	GCATC	1 cut(s)	31
Sse9I	AATT	2 cut(s)	173, 244
StyD4I	CCNGG	2 cut(s)	196, 238
TaaI	ACNGT	3 cut(s)	298, 406, 415
TaiI	ACGT	1 cut(s)	331
TasI	AATT	2 cut(s)	173, 244
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	157, 231
TscAI	CASTG	2 cut(s)	58, 328
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	392, 395
Tsp45I	GTSAC	1 cut(s)	64
TspRI	CASTG	2 cut(s)	58, 328
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.