Prupe.8G147100_v2.0.a1

UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017397
Physical Location & Seq
Forward (+)
16226435 .. 16228051
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G147100.1

Sequence Viewer

Length: 1026 bp
ATGTCAATCCCATTCTGCTACAAGCCTTCTGGGCTCTTGCTACATTCACCAAGAACCAGAAGCCCCTTACTCTGCAATCACAGCAGCAGCTTCAGCAAACAAGAACAAGCTCACAACAACTGGACCGGGTTGAAATTTATTCGGGGCAAGAAGCTGTTGAAGGATCTCAGCACTTGGGGCATTGGGGGCCCTTGTAATTATTTTATCCAAGTCTTGGATCAAACCCAACTTGTTTCTGCTATCAGATTCTGTCATGAGCATTCGATTAGGTTCGTTATCATTGGCAAAGGCTCAAACTGTTTATTTGATGATTTCGGTTTTGATGGTTGTGTCATACTCAACCGGATTGAGTTTTTGGAGGAGGAACGTGGTCTATATAGAGTTGGAAGTGGTTTCCGATTTAACCGGTTAGGGGTACACTGCTCAAATGAAGGATTCACAGGGCTTGAGTTTGCTGGAGGAATTCCTGGTACTGTAGGAGGAGCTACTTATATGAATGCTGGAGCAAATGGGCAGGAGACTGCTGATGCTATACATTGTGTTGACATTATTACAATGGATGGAAGGCTTCATAGACTTAGTAGGACTGATCTCAATTTCGGGTACCGTTCATCTCCATTTCAAGATATGCAAGAATTGGCAGCTATAACTGCTGTTACATTTAAGCTGCAGCACTCGGGATCAGCAAAGAGGAGGCAGCATGAATACATGGAGAGGAGAAGAACTTCTCAACCAGTTGGGGAACAAAGTGCTGGCTCGGTCTTTCGAAACCCATTGGATGTGGGAGTTGCTGCAGCTGAGTTGATTGAGAAAGCTGGGCTGAAAGGCTTTAGAGTGGGAGGGGCAATGGTATCCAAAATGCATGCAAATTTCTTCATAAATTGTGGTGGCTCAACCTCTCAAGACATGCTTGACCTCCTTGCTTTAGTGAAGGAAAAGGTTGATCAGAAATTTGCAGTACAACTTAAGGAAGAAATCCTATATGTTCACCCGCATCGTAACGATGTGAAATCGAAACAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_4 MurB_C

Protein Analysis

342

Amino Acids

37.91

Weight (kDa)

9.02

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017397)

Species Orthologous Gene IDs
prunus_persica Prupe.8G147100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0252551
rosa_laevigata RLG00000015089
rosa_multiflora Rmu_sc0002016.1_g000028
rosa_roxburghii Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa Rorug05G0536800
rosa_samantha Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana Rw6G004760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 603
AccB1I GGYRCC 1 cut(s) 603
AccB7I CCANNNNNTGG 1 cut(s) 214
AciI CCGC 1 cut(s) 992
AclWI GGATC 3 cut(s) 171, 225, 688
AcsI RAATTY 4 cut(s) 134, 462, 868, 950
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 4 cut(s) 417, 472, 605, 960
AfiI CCNNNNNNNGG 2 cut(s) 214, 412
AflII CTTAAG 1 cut(s) 965
AgeI ACCGGT 1 cut(s) 405
AgsI TTSAA 3 cut(s) 133, 160, 623
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 8 cut(s) 90, 110, 154, 485, 644, 667, 797, 815
AluI AGCT 8 cut(s) 90, 110, 154, 485, 644, 667, 797, 815
Alw26I GTCTC 1 cut(s) 512
AlwI GGATC 3 cut(s) 171, 225, 688
AlwNI CAGNNNCTG 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 676
AoxI GGCC 1 cut(s) 187
ApaI GGGCCC 1 cut(s) 191
ApeKI GCWGC 8 cut(s) 84, 87, 641, 667, 670, 697, 791, 794
ApoI RAATTY 4 cut(s) 134, 462, 868, 950
AsiGI ACCGGT 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 724
Asp718I GGTACC 1 cut(s) 603
AspS9I GGNCC 3 cut(s) 123, 187, 188
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 39, 980
AsuII TTCGAA 1 cut(s) 766
AvaI CYCGRG 1 cut(s) 676
AvaII GGWCC 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 603
BanII GRGCYC 2 cut(s) 36, 191
BbvI GCAGC 8 cut(s) 96, 99, 653, 654, 682, 709, 778, 806
BccI CCATC 2 cut(s) 317, 554
BciT130I CCWGG 1 cut(s) 468
BciVI GTATCC 1 cut(s) 862
BclI TGATCA 1 cut(s) 943
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 512
BfmI CTRYAG 3 cut(s) 474, 668, 792
BfrI CTTAAG 1 cut(s) 965
BfuI GTATCC 1 cut(s) 862
BglI GCCNNNNNGGC 1 cut(s) 31
BisI GCNGC 8 cut(s) 85, 88, 642, 668, 671, 698, 792, 795
BlsI GCNGC 8 cut(s) 86, 89, 643, 669, 672, 699, 793, 796
Bme1390I CCNGG 2 cut(s) 127, 468
Bme18I GGWCC 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 676
BmgT120I GGNCC 3 cut(s) 123, 187, 188
BmiI GGNNCC 3 cut(s) 188, 189, 605
BmrFI CCNGG 2 cut(s) 127, 468
BmsI GCATC 2 cut(s) 517, 1003
BpmI CTGGAG 2 cut(s) 477, 522
Bpu14I TTCGAA 1 cut(s) 766
BpuEI CTTGAG 2 cut(s) 467, 885
BpuMI CCSGG 1 cut(s) 127
BsaWI WCCGGW 2 cut(s) 342, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 412
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 2 cut(s) 125, 734
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 1 cut(s) 468
BseGI GGATG 2 cut(s) 565, 784
BseLI CCNNNNNNNGG 2 cut(s) 214, 412
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 2 cut(s) 181, 789
BseNI ACTGG 2 cut(s) 125, 734
BseRI GAGGAG 4 cut(s) 374, 495, 706, 730
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 8 cut(s) 96, 99, 653, 654, 682, 709, 778, 806
BseYI CCCAGC 1 cut(s) 815
BshFI GGCC 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 603
BshTI ACCGGT 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 676
BsiSI CCGG 3 cut(s) 126, 343, 406
BslI CCNNNNNNNGG 2 cut(s) 214, 412
BsmAI GTCTC 1 cut(s) 512
BsmI GAATGC 2 cut(s) 259, 502
BsnI GGCC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 676
Bsp119I TTCGAA 1 cut(s) 766
Bsp120I GGGCCC 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 36, 191
Bsp143I GATC 5 cut(s) 163, 217, 589, 680, 943
BspACI CCGC 1 cut(s) 992
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 180, 790
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 3 cut(s) 188, 189, 605
BspMAI CTGCAG 2 cut(s) 672, 796
BspPI GGATC 3 cut(s) 171, 225, 688
BspT104I TTCGAA 1 cut(s) 766
BspT107I GGYRCC 1 cut(s) 603
BspTI CTTAAG 1 cut(s) 965
BsrDI GCAATG 1 cut(s) 852
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 2 cut(s) 125, 734
BssAI RCCGGY 1 cut(s) 405
BssMI GATC 5 cut(s) 163, 217, 589, 680, 943
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 3 cut(s) 299, 475, 608
BstAFI CTTAAG 1 cut(s) 965
BstBI TTCGAA 1 cut(s) 766
BstC8I GCNNGC 2 cut(s) 754, 864
BstDEI CTNAG 3 cut(s) 167, 578, 798
BstF5I GGATG 2 cut(s) 565, 784
BstKTI GATC 5 cut(s) 166, 220, 592, 683, 946
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 5 cut(s) 163, 217, 589, 680, 943
BstMWI GCNNNNNNNGC 6 cut(s) 31, 81, 93, 177, 186, 650
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 2 cut(s) 866, 910
BstSCI CCNGG 2 cut(s) 125, 466
BstSFI CTRYAG 3 cut(s) 474, 668, 792
BstSLI GKGCMC 1 cut(s) 191
BstV1I GCAGC 8 cut(s) 96, 99, 653, 654, 682, 709, 778, 806
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuI GTATCC 1 cut(s) 862
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 565, 784
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 2 cut(s) 754, 864
CaiI CAGNNNCTG 1 cut(s) 249
CciI TCATGA 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 3 cut(s) 123, 187, 188
Csp6I GTAC 4 cut(s) 416, 471, 604, 959
CspAI ACCGGT 1 cut(s) 405
CviAII CATG 5 cut(s) 254, 701, 709, 863, 907
CviQI GTAC 4 cut(s) 416, 471, 604, 959
DdeI CTNAG 3 cut(s) 167, 578, 798
DpnI GATC 5 cut(s) 165, 219, 591, 682, 945
DpnII GATC 5 cut(s) 163, 217, 589, 680, 943
Eco24I GRGCYC 2 cut(s) 36, 191
Eco47I GGWCC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 676
EcoO109I RGGNCCY 2 cut(s) 187, 188
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 466
EcoT22I ATGCAT 1 cut(s) 864
EcoT38I GRGCYC 2 cut(s) 36, 191
FaeI CATG 5 cut(s) 257, 704, 712, 866, 910
FalI AAGNNNNNCTT 2 cut(s) 894, 926
FatI CATG 5 cut(s) 253, 700, 708, 862, 906
FauI CCCGC 1 cut(s) 999
FbaI TGATCA 1 cut(s) 943
Fnu4HI GCNGC 8 cut(s) 85, 88, 642, 668, 671, 698, 792, 795
FokI GGATG 2 cut(s) 572, 791
FriOI GRGCYC 2 cut(s) 36, 191
Fsp4HI GCNGC 8 cut(s) 85, 88, 642, 668, 671, 698, 792, 795
GluI GCNGC 8 cut(s) 85, 88, 642, 668, 671, 698, 792, 795
GsaI CCCAGC 1 cut(s) 819
GsuI CTGGAG 2 cut(s) 477, 522
HaeIII GGCC 1 cut(s) 189
HapII CCGG 3 cut(s) 126, 343, 406
Hin1II CATG 5 cut(s) 257, 704, 712, 866, 910
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 2 cut(s) 246, 435
HpaII CCGG 3 cut(s) 126, 343, 406
HphI GGTGA 2 cut(s) 39, 980
Hpy166II GTNNAC 3 cut(s) 418, 544, 988
Hpy188I TCNGA 3 cut(s) 245, 398, 948
Hpy188III TCNNGA 4 cut(s) 254, 623, 678, 902
Hpy8I GTNNAC 3 cut(s) 418, 544, 988
HpyAV CCTTC 5 cut(s) 36, 154, 425, 558, 925
HpyCH4III ACNGT 3 cut(s) 299, 475, 608
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 7 cut(s) 75, 631, 670, 794, 862, 866, 956
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 81, 93, 177, 186, 650
HpyF3I CTNAG 3 cut(s) 167, 578, 798
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 5 cut(s) 257, 704, 712, 866, 910
KpnI GGTACC 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 5 cut(s) 163, 217, 589, 680, 943
LmnI GCTCC 2 cut(s) 482, 503
Lsp1109I GCAGC 8 cut(s) 96, 99, 653, 654, 682, 709, 778, 806
LweI GCATC 2 cut(s) 517, 1003
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 2 cut(s) 655, 998
MalI GATC 5 cut(s) 165, 219, 591, 682, 945
MboI GATC 5 cut(s) 163, 217, 589, 680, 943
MboII GAAGA 3 cut(s) 732, 865, 983
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 36, 191
MluCI AATT 8 cut(s) 134, 196, 462, 595, 635, 868, 880, 950
MmeI TCCRAC 1 cut(s) 364
Mph1103I ATGCAT 1 cut(s) 864
MroXI GAANNNNTTC 1 cut(s) 724
MseI TTAA 3 cut(s) 402, 663, 966
MspA1I CMGCKG 1 cut(s) 797
MspCI CTTAAG 1 cut(s) 965
MspI CCGG 3 cut(s) 126, 343, 406
MspR9I CCNGG 2 cut(s) 127, 468
Mva1269I GAATGC 2 cut(s) 259, 502
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 6 cut(s) 31, 81, 93, 177, 186, 650
NciI CCSGG 1 cut(s) 127
NdeII GATC 5 cut(s) 163, 217, 589, 680, 943
NlaIII CATG 5 cut(s) 257, 704, 712, 866, 910
NlaIV GGNNCC 3 cut(s) 188, 189, 605
NsiI ATGCAT 1 cut(s) 864
NspI RCATGY 2 cut(s) 866, 910
NspV TTCGAA 1 cut(s) 766
PaeI GCATGC 1 cut(s) 866
PagI TCATGA 1 cut(s) 253
PctI GAATGC 2 cut(s) 259, 502
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 2 cut(s) 246, 435
PflMI CCANNNNNTGG 1 cut(s) 214
PinAI ACCGGT 1 cut(s) 405
PkrI GCNGC 8 cut(s) 86, 89, 643, 669, 672, 699, 793, 796
Psp6I CCWGG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 3 cut(s) 188, 189, 605
PspOMI GGGCCC 1 cut(s) 187
PspPI GGNCC 3 cut(s) 123, 187, 188
PstI CTGCAG 2 cut(s) 672, 796
PstNI CAGNNNCTG 1 cut(s) 249
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 4 cut(s) 417, 472, 605, 960
RsaNI GTAC 4 cut(s) 416, 471, 604, 959
SaqAI TTAA 3 cut(s) 402, 663, 966
SatI GCNGC 8 cut(s) 85, 88, 642, 668, 671, 698, 792, 795
Sau3AI GATC 5 cut(s) 163, 217, 589, 680, 943
Sau96I GGNCC 3 cut(s) 123, 187, 188
ScrFI CCNGG 2 cut(s) 127, 468
SduI GDGCHC 2 cut(s) 36, 191
SfaNI GCATC 2 cut(s) 517, 1003
SfcI CTRYAG 3 cut(s) 474, 668, 792
SfuI TTCGAA 1 cut(s) 766
SinI GGWCC 1 cut(s) 123
SmlI CTYRAG 3 cut(s) 446, 900, 965
SmoI CTYRAG 3 cut(s) 446, 900, 965
SphI GCATGC 1 cut(s) 866
Sse9I AATT 8 cut(s) 134, 196, 462, 595, 635, 868, 880, 950
SsiI CCGC 1 cut(s) 992
StyD4I CCNGG 2 cut(s) 125, 466
TaaI ACNGT 3 cut(s) 299, 475, 608
TaiI ACGT 1 cut(s) 370
TaqI TCGA 3 cut(s) 263, 766, 1013
TaqII GACCGA 1 cut(s) 748
TasI AATT 8 cut(s) 134, 196, 462, 595, 635, 868, 880, 950
TatI WGTACW 1 cut(s) 958
TfiI GAWTC 2 cut(s) 246, 435
Tru1I TTAA 3 cut(s) 402, 663, 966
Tru9I TTAA 3 cut(s) 402, 663, 966
TscAI CASTG 1 cut(s) 425
TseI GCWGC 8 cut(s) 84, 87, 641, 667, 670, 697, 791, 794
TspDTI ATGAA 6 cut(s) 444, 509, 560, 600, 717, 865
TspRI CASTG 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 965
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 4 cut(s) 134, 462, 868, 950
XceI RCATGY 2 cut(s) 866, 910
XmnI GAANNNNTTC 1 cut(s) 724
Zsp2I ATGCAT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.