Rh6BG047000

UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017397
Physical Location & Seq
Reverse (-)
7765603 .. 7768915
3313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG047000.1

Sequence Viewer

Length: 537 bp
ATGAATGCTGGAGCAAATGGGCAGGAGACCGCTGATTCTGTACATTGTGTTGATATTATAACAAAGGATGGAAAGTGTCATAGGCTTAGCAGGAGTTATCTCAATTTCGGGTATCGGTCATCTCCATTTCAAGATATGCAAGAATTGGCAGCTATAAATGCTGTTATATTTAAACTGCAGCAATCGGAATTAGCAAAGCGAACACTATATGAGTACATGGAAAGGAGAAGAATGTCCCAACTAGTTGAGGAACAAAGTGCTGGCTCGGTCTTTCGGAATCCATCTGATATGGGAGTCGCAGCAGCTGAGTTGATAGACAAAGCTGGGTTGAAAGGTTTTAGAGTGGGAGGGGCAATGGTATCCAAAATCCATGCAAATTTTTTCATCAATTGTGGTGGCTCAACCTCTCAAGACATGCTTGAGCTCATTGCCAGAGTGAAGGAAAAGGTTGATCAGAAATTTGCAGTACAACTTAAGCAAGAAGTAACGTATATCAGTCCACATTATGGTGATGTGGACCCGGATAAGGACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_4 MurB_C

Protein Analysis

178

Amino Acids

19.87

Weight (kDa)

6.9

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MurB_C PF02873 68 - 165 1.8e-31 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017397)

Species Orthologous Gene IDs
prunus_persica Prupe.8G147100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0252551
rosa_laevigata RLG00000015089
rosa_multiflora Rmu_sc0002016.1_g000028
rosa_roxburghii Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa Rorug05G0536800
rosa_samantha Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana Rw6G004760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 506
AciI CCGC 1 cut(s) 30
AcsI RAATTY 2 cut(s) 376, 458
AfaI GTAC 3 cut(s) 42, 215, 468
AfiI CCNNNNNNNGG 2 cut(s) 506, 526
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 2 cut(s) 131, 331
AhlI ACTAGT 1 cut(s) 241
AluBI AGCT 4 cut(s) 152, 305, 323, 424
AluI AGCT 4 cut(s) 152, 305, 323, 424
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 305
ApeKI GCWGC 4 cut(s) 149, 178, 299, 302
ApoI RAATTY 2 cut(s) 376, 458
AspS9I GGNCC 1 cut(s) 517
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 4 cut(s) 161, 190, 311, 314
BccI CCATC 2 cut(s) 62, 289
BciVI GTATCC 1 cut(s) 370
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 521
BcoDI GTCTC 1 cut(s) 20
BcuI ACTAGT 1 cut(s) 241
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 176
BfrI CTTAAG 1 cut(s) 473
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 4 cut(s) 150, 179, 300, 303
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 4 cut(s) 151, 180, 301, 304
Bme1390I CCNGG 1 cut(s) 521
Bme18I GGWCC 1 cut(s) 517
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 1 cut(s) 521
BpmI CTGGAG 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 393, 440
BpuMI CCSGG 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 526
Bse3DI GCAATG 2 cut(s) 360, 426
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 506, 526
BseMI GCAATG 2 cut(s) 360, 426
BseMII CTCAG 1 cut(s) 297
BseXI GCAGC 4 cut(s) 161, 190, 311, 314
BseYI CCCAGC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 1 cut(s) 521
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 506, 526
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 426
Bsp1407I TGTACA 1 cut(s) 40
Bsp143I GATC 1 cut(s) 451
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 519
BspMAI CTGCAG 1 cut(s) 180
BspTI CTTAAG 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 360, 426
BsrGI TGTACA 1 cut(s) 40
BssMI GATC 1 cut(s) 451
BstAFI CTTAAG 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 86, 306
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 519
BstSFI CTRYAG 1 cut(s) 176
BstV1I GCAGC 4 cut(s) 161, 190, 311, 314
BsuI GTATCC 1 cut(s) 370
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 262
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 517
Csp6I GTAC 3 cut(s) 41, 214, 467
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 3 cut(s) 217, 371, 415
CviJI RGCY 7 cut(s) 85, 152, 264, 305, 323, 399, 424
CviKI_1 RGCY 7 cut(s) 85, 152, 264, 305, 323, 399, 424
CviQI GTAC 3 cut(s) 41, 214, 467
DdeI CTNAG 2 cut(s) 86, 306
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
DraI TTTAAA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 517
Eco53kI GAGCTC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 426
FaeI CATG 3 cut(s) 220, 374, 418
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 1 cut(s) 220
FatI CATG 3 cut(s) 216, 370, 414
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 4 cut(s) 150, 179, 300, 303
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 4 cut(s) 150, 179, 300, 303
FspBI CTAG 1 cut(s) 242
GluI GCNGC 4 cut(s) 150, 179, 300, 303
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 30
HapII CCGG 1 cut(s) 521
Hin1II CATG 3 cut(s) 220, 374, 418
HinfI GANTC 3 cut(s) 35, 277, 294
HpaII CCGG 1 cut(s) 521
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 2 cut(s) 500, 517
Hpy188I TCNGA 4 cut(s) 187, 276, 286, 456
Hpy188III TCNNGA 2 cut(s) 131, 410
Hpy8I GTNNAC 2 cut(s) 500, 517
HpyAV CCTTC 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 4 cut(s) 139, 178, 374, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 86, 306
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 3 cut(s) 220, 374, 418
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 1 cut(s) 451
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 5 cut(s) 8, 76, 246, 309, 445
Lsp1109I GCAGC 4 cut(s) 161, 190, 311, 314
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 1 cut(s) 484
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 1 cut(s) 240
MfeI CAATTG 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 6 cut(s) 103, 143, 188, 376, 388, 458
MlyI GAGTC 1 cut(s) 303
MnlI CCTC 3 cut(s) 241, 341, 415
MseI TTAA 2 cut(s) 171, 474
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 2 cut(s) 32, 305
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 521
MunI CAATTG 1 cut(s) 388
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 521
NdeII GATC 1 cut(s) 451
NlaIII CATG 3 cut(s) 220, 374, 418
NlaIV GGNNCC 1 cut(s) 519
NspI RCATGY 1 cut(s) 418
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 35, 277
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 4 cut(s) 151, 180, 301, 304
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PsiI TTATAA 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 1 cut(s) 517
PstI CTGCAG 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 3 cut(s) 42, 215, 468
RsaNI GTAC 3 cut(s) 41, 214, 467
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 426
SaqAI TTAA 2 cut(s) 171, 474
SatI GCNGC 4 cut(s) 150, 179, 300, 303
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 1 cut(s) 517
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 1 cut(s) 426
SetI ASST 8 cut(s) 154, 307, 325, 337, 407, 426, 450, 491
SfcI CTRYAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 517
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 3 cut(s) 408, 419, 473
SmoI CTYRAG 3 cut(s) 408, 419, 473
SpeI ACTAGT 1 cut(s) 241
Sse9I AATT 6 cut(s) 103, 143, 188, 376, 388, 458
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 519
TaiI ACGT 1 cut(s) 491
TaqII GACCGA 2 cut(s) 105, 256
TasI AATT 6 cut(s) 103, 143, 188, 376, 388, 458
TatI WGTACW 3 cut(s) 40, 213, 466
TfiI GAWTC 2 cut(s) 35, 277
Tru1I TTAA 2 cut(s) 171, 474
Tru9I TTAA 2 cut(s) 171, 474
TseI GCWGC 4 cut(s) 149, 178, 299, 302
TspDTI ATGAA 2 cut(s) 17, 373
Van91I CCANNNNNTGG 1 cut(s) 506
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 2 cut(s) 376, 458
XceI RCATGY 1 cut(s) 418
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.