Rmu_sc0002016.1_g000028

UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002016.1
OG0017397
Physical Location & Seq
Reverse (-)
85221 .. 87062
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002016.1_g000028.1.cds

Sequence Viewer

Length: 936 bp
atggagaagcagaagaggaaggcggaggtggacttgaaggaaggggaggggtcggcggtgccgaggagcgtgacagaggtgttgaggcgggattggtggcagtggctgaggcggtcgagcgtggattggtgcttcttttggcgagctagatactgtgatgagcattcaatccggtacattgtcattggcaaaggcacaaattgtttgtttgatgatttgggttttgatggctgtgttatactcaaccgaatcgagttcttggggaagaaagaacccggcgtgtacaccgttggaagcggttttcgttttaacaagttgggggttaagtgctccaatgaaggatttacaggacttgagtttgcaggagggattcttggctctgtaggaggagctatttgtatgaatgctggagcaaatgggcaggagaccgctgattctgtacattgtgttgatattataacaaaggatggaaagtgtcataggcttagcaggagttatctcaatttcgggtatcggtcatctccatttcaagatatgcaagaattggcggctataaatgctgttacatttaaactgcagcaatcggaattagcaaagcgaacactatatgagtacatggaaaggagaagaatgtcccgaccagttgaggaacaaagtgctggctcggtctttcggtatccatctgatatgggagtcgcagcagctgagttgatagacaaagctgggttgaaaggttttagagtgggaggggcaatggtatccaaaatccatgcaaattttttcatcaattgtggtggctcaacctctcaagacatgcttgagctcattgccagagtgaaggaaaaggttgatcagaaatttgcagtacaacttaagcaagaagtaacgtatatcaatccacattatgctgatgtggacccggataaggacagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_4 MurB_C

Protein Analysis

311

Amino Acids

34.97

Weight (kDa)

8.49

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017397)

Species Orthologous Gene IDs
prunus_persica Prupe.8G147100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0252551
rosa_laevigata RLG00000015089
rosa_multiflora Rmu_sc0002016.1_g000028
rosa_roxburghii Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa Rorug05G0536800
rosa_samantha Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana Rw6G004760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 58
AciI CCGC 7 cut(s) 23, 56, 88, 112, 297, 429, 548
AcsI RAATTY 2 cut(s) 775, 857
AfaI GTAC 5 cut(s) 176, 284, 441, 614, 867
AfiI CCNNNNNNNGG 1 cut(s) 925
AflII CTTAAG 1 cut(s) 872
AgsI TTSAA 4 cut(s) 37, 168, 530, 730
AluBI AGCT 5 cut(s) 146, 392, 704, 722, 823
AluI AGCT 5 cut(s) 146, 392, 704, 722, 823
Alw21I GWGCWC 2 cut(s) 332, 825
Alw26I GTCTC 1 cut(s) 419
AlwNI CAGNNNCTG 2 cut(s) 106, 704
ApeKI GCWGC 3 cut(s) 577, 698, 701
ApoI RAATTY 2 cut(s) 775, 857
AspS9I GGNCC 1 cut(s) 916
AsuC2I CCSGG 2 cut(s) 276, 920
AvaII GGWCC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 825
Bbv12I GWGCWC 2 cut(s) 332, 825
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 589, 710, 713
BccI CCATC 3 cut(s) 221, 461, 688
BciVI GTATCC 2 cut(s) 687, 769
BclI TGATCA 1 cut(s) 850
BcnI CCSGG 2 cut(s) 276, 920
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 2 cut(s) 381, 575
BfrI CTTAAG 1 cut(s) 872
BfuI GTATCC 2 cut(s) 687, 769
BisI GCNGC 4 cut(s) 549, 578, 699, 702
BlpI GCTNAGC 1 cut(s) 485
BlsI GCNGC 4 cut(s) 550, 579, 700, 703
Bme1390I CCNGG 2 cut(s) 276, 920
Bme18I GGWCC 1 cut(s) 916
BmgT120I GGNCC 1 cut(s) 916
BmiI GGNNCC 2 cut(s) 60, 918
BmrFI CCNGG 2 cut(s) 276, 920
BpmI CTGGAG 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 485
BpuEI CTTGAG 3 cut(s) 374, 792, 839
BpuMI CCSGG 2 cut(s) 276, 920
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 62
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 925
Bse1I ACTGG 1 cut(s) 641
Bse3DI GCAATG 2 cut(s) 759, 825
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 1 cut(s) 925
BseMI GCAATG 2 cut(s) 759, 825
BseMII CTCAG 2 cut(s) 98, 696
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 2 cut(s) 79, 402
BseXI GCAGC 3 cut(s) 589, 710, 713
BseYI CCCAGC 1 cut(s) 722
Bsh1285I CGRYCG 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 58
BsiEI CGRYCG 1 cut(s) 116
BsiHKAI GWGCWC 2 cut(s) 332, 825
BsiSI CCGG 3 cut(s) 172, 276, 920
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 1 cut(s) 925
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 2 cut(s) 163, 409
Bso31I GGTCTC 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 332, 825
Bsp1407I TGTACA 2 cut(s) 282, 439
Bsp143I GATC 1 cut(s) 850
Bsp1720I GCTNAGC 1 cut(s) 485
BspACI CCGC 7 cut(s) 23, 56, 88, 112, 297, 429, 548
BspCNI CTCAG 2 cut(s) 99, 697
BspLI GGNNCC 2 cut(s) 60, 918
BspMAI CTGCAG 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 58
BspTI CTTAAG 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 2 cut(s) 759, 825
BsrGI TGTACA 2 cut(s) 282, 439
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 850
Bst4CI ACNGT 2 cut(s) 155, 289
Bst6I CTCTTC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 872
BstAUI TGTACA 2 cut(s) 282, 439
BstC8I GCNNGC 2 cut(s) 144, 661
BstDEI CTNAG 3 cut(s) 107, 485, 705
BstF5I GGATG 1 cut(s) 472
BstKTI GATC 1 cut(s) 853
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 1 cut(s) 850
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 2 cut(s) 274, 918
BstSFI CTRYAG 2 cut(s) 381, 575
BstV1I GCAGC 3 cut(s) 589, 710, 713
BsuI GTATCC 2 cut(s) 687, 769
BtsCI GGATG 1 cut(s) 472
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 144, 661
CaiI CAGNNNCTG 2 cut(s) 106, 704
Cfr13I GGNCC 1 cut(s) 916
Csp6I GTAC 5 cut(s) 175, 283, 440, 613, 866
CspCI CAANNNNNGTGG 2 cut(s) 775, 810
CviAII CATG 3 cut(s) 616, 770, 814
CviQI GTAC 5 cut(s) 175, 283, 440, 613, 866
DdeI CTNAG 3 cut(s) 107, 485, 705
DpnI GATC 1 cut(s) 852
DpnII GATC 1 cut(s) 850
DraI TTTAAA 1 cut(s) 571
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 823
Eco24I GRGCYC 1 cut(s) 825
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 916
Eco53kI GAGCTC 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 823
EcoT38I GRGCYC 1 cut(s) 825
FaeI CATG 3 cut(s) 619, 773, 817
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 619
FatI CATG 3 cut(s) 615, 769, 813
FauI CCCGC 1 cut(s) 81
FbaI TGATCA 1 cut(s) 850
Fnu4HI GCNGC 4 cut(s) 549, 578, 699, 702
FokI GGATG 1 cut(s) 479
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 4 cut(s) 549, 578, 699, 702
FspBI CTAG 1 cut(s) 147
GluI GCNGC 4 cut(s) 549, 578, 699, 702
GsaI CCCAGC 1 cut(s) 726
GsuI CTGGAG 1 cut(s) 429
HapII CCGG 3 cut(s) 172, 276, 920
Hin1II CATG 3 cut(s) 619, 773, 817
HinfI GANTC 4 cut(s) 249, 370, 434, 693
HpaII CCGG 3 cut(s) 172, 276, 920
Hpy166II GTNNAC 4 cut(s) 31, 283, 285, 916
Hpy188I TCNGA 3 cut(s) 586, 685, 855
Hpy188III TCNNGA 3 cut(s) 530, 636, 809
Hpy8I GTNNAC 4 cut(s) 31, 283, 285, 916
HpyAV CCTTC 5 cut(s) 13, 31, 35, 332, 832
HpyCH4III ACNGT 2 cut(s) 155, 289
HpyCH4IV ACGT 1 cut(s) 887
HpyCH4V TGCA 5 cut(s) 362, 538, 577, 773, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 3 cut(s) 107, 485, 705
HpySE526I ACGT 1 cut(s) 887
Hsp92II CATG 3 cut(s) 619, 773, 817
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 1 cut(s) 850
LmnI GCTCC 4 cut(s) 66, 335, 389, 410
Lsp1109I GCAGC 3 cut(s) 589, 710, 713
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 887
MaeIII GTNAC 3 cut(s) 70, 562, 883
MalI GATC 1 cut(s) 852
MboI GATC 1 cut(s) 850
MboII GAAGA 3 cut(s) 25, 277, 639
MfeI CAATTG 1 cut(s) 787
MhlI GDGCHC 2 cut(s) 332, 825
MluCI AATT 7 cut(s) 199, 502, 542, 587, 775, 787, 857
MlyI GAGTC 1 cut(s) 702
MmeI TCCRAC 1 cut(s) 271
MseI TTAA 4 cut(s) 309, 324, 570, 873
MspA1I CMGCKG 2 cut(s) 431, 704
MspCI CTTAAG 1 cut(s) 872
MspI CCGG 3 cut(s) 172, 276, 920
MspR9I CCNGG 2 cut(s) 276, 920
MunI CAATTG 1 cut(s) 787
Mva1269I GAATGC 2 cut(s) 163, 409
MwoI GCNNNNNNNGC 1 cut(s) 557
NciI CCSGG 2 cut(s) 276, 920
NdeII GATC 1 cut(s) 850
NlaIII CATG 3 cut(s) 619, 773, 817
NlaIV GGNNCC 2 cut(s) 60, 918
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 1 cut(s) 817
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PctI GAATGC 2 cut(s) 163, 409
PfeI GAWTC 3 cut(s) 249, 370, 434
PkrI GCNGC 4 cut(s) 550, 579, 700, 703
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PsiI TTATAA 1 cut(s) 458
Psp124BI GAGCTC 1 cut(s) 825
PspFI CCCAGC 1 cut(s) 722
PspN4I GGNNCC 2 cut(s) 60, 918
PspPI GGNCC 1 cut(s) 916
PstI CTGCAG 1 cut(s) 579
PstNI CAGNNNCTG 2 cut(s) 106, 704
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 5 cut(s) 176, 284, 441, 614, 867
RsaNI GTAC 5 cut(s) 175, 283, 440, 613, 866
SacI GAGCTC 1 cut(s) 825
SaqAI TTAA 4 cut(s) 309, 324, 570, 873
SatI GCNGC 4 cut(s) 549, 578, 699, 702
Sau3AI GATC 1 cut(s) 850
Sau96I GGNCC 1 cut(s) 916
SchI GAGTC 1 cut(s) 702
ScrFI CCNGG 2 cut(s) 276, 920
SduI GDGCHC 2 cut(s) 332, 825
SfcI CTRYAG 2 cut(s) 381, 575
SinI GGWCC 1 cut(s) 916
SmlI CTYRAG 4 cut(s) 353, 807, 818, 872
SmoI CTYRAG 4 cut(s) 353, 807, 818, 872
Sse9I AATT 7 cut(s) 199, 502, 542, 587, 775, 787, 857
SsiI CCGC 7 cut(s) 23, 56, 88, 112, 297, 429, 548
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 825
StyD4I CCNGG 2 cut(s) 274, 918
TaaI ACNGT 2 cut(s) 155, 289
TaiI ACGT 1 cut(s) 890
TaqI TCGA 2 cut(s) 116, 252
TaqII GACCGA 2 cut(s) 504, 655
TasI AATT 7 cut(s) 199, 502, 542, 587, 775, 787, 857
TatI WGTACW 4 cut(s) 282, 439, 612, 865
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 3 cut(s) 249, 370, 434
Tru1I TTAA 4 cut(s) 309, 324, 570, 873
Tru9I TTAA 4 cut(s) 309, 324, 570, 873
TscAI CASTG 1 cut(s) 107
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 3 cut(s) 577, 698, 701
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 351, 416, 772
TspRI CASTG 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 916
XapI RAATTY 2 cut(s) 775, 857
XceI RCATGY 1 cut(s) 817
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.