Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017397

Physical Location & Seq

Genomic Coordinates Reverse (-)

4417205 .. 4418519

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG041400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTCAATCTCTCTCTGTTACAACTCTCCTGGACTGTTGTTGCTACATTCACCAAAAACCAGAGGCCCTTTTCTCTGCAATCATAGCAGCAGCAAACAAGAACAGACCCAGAACCGGAACGAGTTGAAATTTGTTCGAGGCAAGAAGCTGTTGAAACACCTCAGCACTTGGGGAATTGGTGGCCCTTGTAATCATTTCATCCAAGTATTCGATCAGACCCAGCTTGTTTCTGCTGTCAGATACTGTGATGAGCATTCAATCCGGTTCATTGTCATTGGCAAAGGCTCAAATTGTTTGTTTGATGATTTGGGTTTTGATGGTTGTGTTATACTCAACCGAATCGAGTTCTTGGAGAAGAAAGAACCCGGCGTGTACACCGTTGGAAGCGGTTTTCGTTTTAACAAGTTGGGGGTTAAGTGCTCCAATGAAGGATTTACGGGACTTGAGTTTGCTGGAGGGATTCCTGGTTCTGATGGAAAGTTTCATAGGCTTAGCAGGAGTGATCTCAATTTCGGGTATCGGTCATCTCCATTTCAAGATATGCAAGAATTGGCAGCTATAAGTGCTGTTACATTTAAACTGCAGCAATCGGAATCAGCAAAGCGAACACTATATGAGTACATGGAAAGGAGAAGAGTGTCCCAACCAGTTGGGGAACAAAGTGCTGGCTCGGTCTTTCGGAATCCATCTGATATGGGAGTCGCAGCAGCTGAGTTGATAGACAAGGCTGGGTTGAAAGGTTTTAGAGTGGGAGGGGCAATGGTATCCAAAATCCATGCAAATTTTTTCATCAATTGTGGTGGCTCAACCTCTCAAGACATGCTTGAGCTCATTGCCAGAGTGAAGGAAAAGGTTGATCAGAAATTTGCAGTACAACTTAAGGAAGAAGTAACGTATATCAATCCACATTATGGTGATGTGAACCCGGATAAAGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_4 MurB_C

Protein Analysis

313

Amino Acids

34.81

Weight (kDa)

8.93

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	66 - 157	5.1e-08	FAD binding domain
MurB_C	PF02873	202 - 300	3.9e-32	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017397)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G147100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0252551
rosa_laevigata	RLG00000015089
rosa_multiflora	Rmu_sc0002016.1_g000028
rosa_roxburghii	Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa	Rorug05G0536800
rosa_samantha	Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana	Rw6G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	911
AciI	CCGC	1 cut(s)	387
AcsI	RAATTY	3 cut(s)	128, 781, 863
AfaI	GTAC	3 cut(s)	374, 620, 873
AfiI	CCNNNNNNNGG	2 cut(s)	114, 911
AflII	CTTAAG	1 cut(s)	878
AgsI	TTSAA	5 cut(s)	127, 154, 258, 536, 736
AjnI	CCWGG	2 cut(s)	28, 463
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	5 cut(s)	148, 223, 557, 710, 829
AluI	AGCT	5 cut(s)	148, 223, 557, 710, 829
Alw21I	GWGCWC	2 cut(s)	422, 831
AlwNI	CAGNNNCTG	2 cut(s)	243, 710
AoxI	GGCC	2 cut(s)	64, 181
ApeKI	GCWGC	6 cut(s)	87, 90, 554, 583, 704, 707
ApoI	RAATTY	3 cut(s)	128, 781, 863
AspS9I	GGNCC	2 cut(s)	65, 182
AsuC2I	CCSGG	2 cut(s)	366, 926
AsuHPI	GGTGA	2 cut(s)	42, 926
BanII	GRGCYC	1 cut(s)	831
Bbv12I	GWGCWC	2 cut(s)	422, 831
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	6 cut(s)	99, 102, 566, 595, 716, 719
BccI	CCATC	3 cut(s)	311, 467, 694
BciT130I	CCWGG	2 cut(s)	30, 465
BciVI	GTATCC	1 cut(s)	775
BclI	TGATCA	1 cut(s)	856
BcnI	CCSGG	2 cut(s)	366, 926
BfmI	CTRYAG	1 cut(s)	581
BfrI	CTTAAG	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	775
BisI	GCNGC	6 cut(s)	88, 91, 555, 584, 705, 708
BlpI	GCTNAGC	1 cut(s)	491
BlsI	GCNGC	6 cut(s)	89, 92, 556, 585, 706, 709
Bme1390I	CCNGG	4 cut(s)	30, 366, 465, 926
BmgT120I	GGNCC	2 cut(s)	65, 182
BmrFI	CCNGG	4 cut(s)	30, 366, 465, 926
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	491
BpuEI	CTTGAG	3 cut(s)	464, 798, 845
BpuMI	CCSGG	2 cut(s)	366, 926
BsaWI	WCCGGW	2 cut(s)	114, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 911
Bse1I	ACTGG	1 cut(s)	647
Bse3DI	GCAATG	2 cut(s)	765, 831
BseBI	CCWGG	2 cut(s)	30, 465
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	114, 911
BseMI	GCAATG	2 cut(s)	765, 831
BseMII	CTCAG	2 cut(s)	175, 702
BseNI	ACTGG	1 cut(s)	647
BseXI	GCAGC	6 cut(s)	99, 102, 566, 595, 716, 719
BseYI	CCCAGC	2 cut(s)	219, 728
BshFI	GGCC	2 cut(s)	66, 183
BsiHKAI	GWGCWC	2 cut(s)	422, 831
BsiSI	CCGG	4 cut(s)	115, 262, 366, 926
BslFI	GGGAC	2 cut(s)	453, 625
BslI	CCNNNNNNNGG	2 cut(s)	114, 911
BsmFI	GGGAC	2 cut(s)	453, 625
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	66, 183
Bsp1286I	GDGCHC	2 cut(s)	422, 831
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	211, 502, 856
Bsp1720I	GCTNAGC	1 cut(s)	491
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	2 cut(s)	66, 183
BspCNI	CTCAG	2 cut(s)	174, 703
BspMAI	CTGCAG	1 cut(s)	585
BspTI	CTTAAG	1 cut(s)	878
BsrDI	GCAATG	2 cut(s)	765, 831
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	647
BssMI	GATC	3 cut(s)	211, 502, 856
Bst2UI	CCWGG	2 cut(s)	30, 465
Bst4CI	ACNGT	3 cut(s)	36, 245, 379
Bst6I	CTCTTC	1 cut(s)	628
BstAFI	CTTAAG	1 cut(s)	878
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	3 cut(s)	161, 491, 711
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	3 cut(s)	214, 505, 859
BstMBI	GATC	3 cut(s)	211, 502, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 563
BstNI	CCWGG	2 cut(s)	30, 465
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	4 cut(s)	28, 364, 463, 924
BstSFI	CTRYAG	1 cut(s)	581
BstV1I	GCAGC	6 cut(s)	99, 102, 566, 595, 716, 719
BstXI	CCANNNNNNTGG	1 cut(s)	650
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	2 cut(s)	66, 183
BtsCI	GGATG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	667
CaiI	CAGNNNCTG	2 cut(s)	243, 710
Cfr13I	GGNCC	2 cut(s)	65, 182
Csp6I	GTAC	3 cut(s)	373, 619, 872
CspCI	CAANNNNNGTGG	2 cut(s)	781, 816
CviAII	CATG	3 cut(s)	622, 776, 820
CviQI	GTAC	3 cut(s)	373, 619, 872
DdeI	CTNAG	3 cut(s)	161, 491, 711
DpnI	GATC	3 cut(s)	213, 504, 858
DpnII	GATC	3 cut(s)	211, 502, 856
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	628
EarI	CTCTTC	1 cut(s)	628
Ecl136II	GAGCTC	1 cut(s)	829
Eco24I	GRGCYC	1 cut(s)	831
Eco53kI	GAGCTC	1 cut(s)	829
EcoICRI	GAGCTC	1 cut(s)	829
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	28, 463
EcoT38I	GRGCYC	1 cut(s)	831
FaeI	CATG	3 cut(s)	625, 779, 823
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FaqI	GGGAC	2 cut(s)	453, 625
FatI	CATG	3 cut(s)	621, 775, 819
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	6 cut(s)	88, 91, 555, 584, 705, 708
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	6 cut(s)	88, 91, 555, 584, 705, 708
GluI	GCNGC	6 cut(s)	88, 91, 555, 584, 705, 708
GsaI	CCCAGC	2 cut(s)	223, 732
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	66, 183
HapII	CCGG	4 cut(s)	115, 262, 366, 926
Hin1II	CATG	3 cut(s)	625, 779, 823
HinfI	GANTC	5 cut(s)	339, 460, 593, 682, 699
HpaII	CCGG	4 cut(s)	115, 262, 366, 926
HphI	GGTGA	2 cut(s)	42, 926
Hpy166II	GTNNAC	3 cut(s)	373, 375, 922
Hpy188I	TCNGA	7 cut(s)	216, 239, 472, 592, 681, 691, 861
Hpy188III	TCNNGA	2 cut(s)	536, 815
Hpy8I	GTNNAC	3 cut(s)	373, 375, 922
HpyAV	CCTTC	2 cut(s)	422, 838
HpyCH4III	ACNGT	3 cut(s)	36, 245, 379
HpyCH4IV	ACGT	1 cut(s)	893
HpyCH4V	TGCA	5 cut(s)	78, 544, 583, 779, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 563
HpyF3I	CTNAG	3 cut(s)	161, 491, 711
HpySE526I	ACGT	1 cut(s)	893
Hsp92II	CATG	3 cut(s)	625, 779, 823
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	3 cut(s)	211, 502, 856
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	6 cut(s)	99, 102, 566, 595, 716, 719
MaeII	ACGT	1 cut(s)	893
MaeIII	GTNAC	3 cut(s)	17, 568, 889
MalI	GATC	3 cut(s)	213, 504, 858
MboI	GATC	3 cut(s)	211, 502, 856
MboII	GAAGA	3 cut(s)	367, 645, 896
MfeI	CAATTG	1 cut(s)	793
MhlI	GDGCHC	2 cut(s)	422, 831
MluCI	AATT	8 cut(s)	128, 174, 289, 508, 548, 781, 793, 863
MlyI	GAGTC	1 cut(s)	708
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	6 cut(s)	56, 131, 170, 449, 746, 820
MseI	TTAA	4 cut(s)	399, 414, 576, 879
MslI	CAYNNNNRTG	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	710
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	4 cut(s)	115, 262, 366, 926
MspR9I	CCNGG	4 cut(s)	30, 366, 465, 926
MunI	CAATTG	1 cut(s)	793
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	2 cut(s)	30, 465
MwoI	GCNNNNNNNGC	2 cut(s)	84, 563
NciI	CCSGG	2 cut(s)	366, 926
NdeII	GATC	3 cut(s)	211, 502, 856
NlaIII	CATG	3 cut(s)	625, 779, 823
NspI	RCATGY	1 cut(s)	823
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	4 cut(s)	339, 460, 593, 682
PflMI	CCANNNNNTGG	1 cut(s)	911
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	6 cut(s)	89, 92, 556, 585, 706, 709
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
Psp124BI	GAGCTC	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	28, 463
PspFI	CCCAGC	2 cut(s)	219, 728
PspGI	CCWGG	2 cut(s)	28, 463
PspPI	GGNCC	2 cut(s)	65, 182
PstI	CTGCAG	1 cut(s)	585
PstNI	CAGNNNCTG	2 cut(s)	243, 710
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	3 cut(s)	374, 620, 873
RsaNI	GTAC	3 cut(s)	373, 619, 872
RseI	CAYNNNNRTG	1 cut(s)	912
SacI	GAGCTC	1 cut(s)	831
SaqAI	TTAA	4 cut(s)	399, 414, 576, 879
SatI	GCNGC	6 cut(s)	88, 91, 555, 584, 705, 708
Sau3AI	GATC	3 cut(s)	211, 502, 856
Sau96I	GGNCC	2 cut(s)	65, 182
SchI	GAGTC	1 cut(s)	708
ScrFI	CCNGG	4 cut(s)	30, 366, 465, 926
SduI	GDGCHC	2 cut(s)	422, 831
SfcI	CTRYAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	4 cut(s)	443, 813, 824, 878
SmoI	CTYRAG	4 cut(s)	443, 813, 824, 878
Sse9I	AATT	8 cut(s)	128, 174, 289, 508, 548, 781, 793, 863
SsiI	CCGC	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	831
StyD4I	CCNGG	4 cut(s)	28, 364, 463, 924
TaaI	ACNGT	3 cut(s)	36, 245, 379
TaiI	ACGT	1 cut(s)	896
TaqI	TCGA	3 cut(s)	136, 210, 342
TaqII	GACCGA	2 cut(s)	510, 661
TasI	AATT	8 cut(s)	128, 174, 289, 508, 548, 781, 793, 863
TatI	WGTACW	3 cut(s)	372, 618, 871
TfiI	GAWTC	4 cut(s)	339, 460, 593, 682
Tru1I	TTAA	4 cut(s)	399, 414, 576, 879
Tru9I	TTAA	4 cut(s)	399, 414, 576, 879
TseI	GCWGC	6 cut(s)	87, 90, 554, 583, 704, 707
TspDTI	ATGAA	5 cut(s)	187, 256, 441, 473, 778
Van91I	CCANNNNNTGG	1 cut(s)	911
Vha464I	CTTAAG	1 cut(s)	878
XapI	RAATTY	3 cut(s)	128, 781, 863
XceI	RCATGY	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.