Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017397

Physical Location & Seq

Genomic Coordinates Reverse (-)

7672503 .. 7674597

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22646

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTTATACTGTGATGAGCATTCAATCCTGTTCATTGTCATTGGCAAAGGCTCAAATTGTTTGTTTGATGATTTGGGTTTTGATGGTTGTGTTATACTCAACCAAATCGAGTTCTTGGGGAAGAAAGAACCCGGCCTGTACACCGTTGGAAGCGGTTTTCGTTTTAACAAGTTGGGGGTTAAGTGCTCCAATGAAGGATTTACAGGACTTGAGTTTGCAGGAGGGATTCCTGGTTCTGTAGGAGGAGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_4 MurB_C

Protein Analysis

84

Amino Acids

8.88

Weight (kDa)

4.83

Isoelectric Point (pI)

20.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	3 - 84	4.3e-08	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017397)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G147100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0252551
rosa_laevigata	RLG00000015089
rosa_multiflora	Rmu_sc0002016.1_g000028
rosa_roxburghii	Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa	Rorug05G0536800
rosa_samantha	Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana	Rw6G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	229
AloI	GAACNNNNNNTCC	2 cut(s)	217, 249
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	132, 231
BmrFI	CCNGG	2 cut(s)	132, 231
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp1407I	TGTACA	1 cut(s)	138
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	11, 145
BstAUI	TGTACA	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	130, 229
BstSFI	CTRYAG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	139
CviJI	RGCY	3 cut(s)	51, 135, 248
CviKI_1	RGCY	3 cut(s)	51, 135, 248
CviQI	GTAC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	229
FaiI	YATR	2 cut(s)	7, 95
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	132
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	2 cut(s)	11, 145
HpyCH4V	TGCA	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	191, 245
LpnPI	CCDG	7 cut(s)	41, 145, 149, 189, 204, 216, 243
MboII	GAAGA	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	215, 236
MseI	TTAA	3 cut(s)	165, 180, 253
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	132, 231
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	231
NciI	CCSGG	1 cut(s)	132
PctI	GAATGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	165, 180, 253
ScrFI	CCNGG	2 cut(s)	132, 231
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	130, 229
TaaI	ACNGT	2 cut(s)	11, 145
TaqI	TCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	55
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	165, 180, 253
Tru9I	TTAA	3 cut(s)	165, 180, 253
TspDTI	ATGAA	2 cut(s)	22, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.