Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017397

Physical Location & Seq

Genomic Coordinates Reverse (-)

7805535 .. 7810771

Gene Structure 5237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G004760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCAATCTCTCTCTATTACAACTCTCCTGGACTATTGTTGCTACATTCTCCAAAAACTAGATGTCCCTTTCACTCCAATCATAGCAGCAGCAAACAAGAGCAGGCCCAGAACCGGAACGAGTTGAAATTTGTTAGAGGCAAGAAGCTGTTGAAACACCTCAGCACTTGGGCCATTGGTGGCCCTTGTGGGGCTAGTTTGGGATTGCTATACTGTGATGAGCATTCAATCCGGTTCATTGTCATTGGCAAAGGCTCAAATTGTTTGTTTGATGATTTGGGTTTTGATGGTTGTGTTATACTCAACCGAATCGAGTTCTTGGGGAAGAAAGAACCCGGCGTGTACACCGTTGGAAGCGGTTTTCGTTTTAACAAGTTGGGGGTTAAGTGCTCCAATGAAGGATTTACAGGACTTGAGTTTGCAGGAGGGATTCCTGGTTCTGTAGGAGGAGCTATTTATATGAATGCTGGAGCAAATGGGCAGGAGACCGCTGATTCTGTACATTGTGTTGATATTATAACAAAGGATGGAAAATGTCATAGGCTTAGCAGGAGTTATCTCAATTTCGGGTATTGGTCATCTCCATTTCAAGATATGCAAGAATTGGCAGCTATAAATGCTGTTACATTTAAACTGCAGCAATCGGAATTAGCAAAGCGAACACTATATGAGTACATGGAAAGGAGAAGAGTGTCCCAACCAGTTGAGGAACAAAGTGCTGGCTCGGTCTTTCGGAATCCATCTGATATGGGAGTCGCAACAGCTGAGTTGATAGACAAAGCTGGGTTGAAAGGTTTTAGAGTGGGAGGGGCAATGGTATCCAAAATCCATGCAAATTTTTTCATCAATTGTGGTGGCTCAACCTCTCAAGACATGCTTGAGCTCATTGCCAGAGTGAAGGATAAGGTTGATCAGAAATTTGCAATACAACTTAAGGAAGAAGTAACGTATATCAATCCACATTATGGTGATGTGGACCCGGATAAGGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_4 MurB_C

Protein Analysis

331

Amino Acids

36.46

Weight (kDa)

8.48

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	71 - 183	2.8e-16	FAD binding domain
MurB_C	PF02873	221 - 318	1.1e-31	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017397)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G147100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0252551
rosa_laevigata	RLG00000015089
rosa_multiflora	Rmu_sc0002016.1_g000028
rosa_roxburghii	Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa	Rorug05G0536800
rosa_samantha	Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana	Rw6G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AccB7I	CCANNNNNTGG	1 cut(s)	965
AciI	CCGC	2 cut(s)	357, 489
AcsI	RAATTY	3 cut(s)	128, 835, 917
AfaI	GTAC	3 cut(s)	344, 501, 674
AfiI	CCNNNNNNNGG	4 cut(s)	114, 190, 965, 985
AflII	CTTAAG	1 cut(s)	932
AgsI	TTSAA	5 cut(s)	127, 154, 228, 590, 790
AjnI	CCWGG	2 cut(s)	28, 433
AloI	GAACNNNNNNTCC	2 cut(s)	421, 453
AluBI	AGCT	6 cut(s)	148, 452, 611, 764, 782, 883
AluI	AGCT	6 cut(s)	148, 452, 611, 764, 782, 883
Alw21I	GWGCWC	2 cut(s)	392, 885
Alw26I	GTCTC	1 cut(s)	479
AoxI	GGCC	3 cut(s)	105, 171, 181
ApeKI	GCWGC	4 cut(s)	87, 90, 608, 637
ApoI	RAATTY	3 cut(s)	128, 835, 917
AspS9I	GGNCC	4 cut(s)	106, 171, 182, 976
AsuC2I	CCSGG	2 cut(s)	336, 980
AsuHPI	GGTGA	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	976
BanII	GRGCYC	1 cut(s)	885
Bbv12I	GWGCWC	2 cut(s)	392, 885
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	4 cut(s)	99, 102, 620, 649
BccI	CCATC	3 cut(s)	281, 521, 748
BciT130I	CCWGG	2 cut(s)	30, 435
BciVI	GTATCC	1 cut(s)	829
BclI	TGATCA	1 cut(s)	910
BcnI	CCSGG	2 cut(s)	336, 980
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	2 cut(s)	60, 195
BfmI	CTRYAG	2 cut(s)	441, 635
BfrI	CTTAAG	1 cut(s)	932
BfuI	GTATCC	1 cut(s)	829
BisI	GCNGC	4 cut(s)	88, 91, 609, 638
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	4 cut(s)	89, 92, 610, 639
Bme1390I	CCNGG	4 cut(s)	30, 336, 435, 980
Bme18I	GGWCC	1 cut(s)	976
BmgT120I	GGNCC	4 cut(s)	106, 171, 182, 976
BmiI	GGNNCC	1 cut(s)	978
BmrFI	CCNGG	4 cut(s)	30, 336, 435, 980
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	3 cut(s)	434, 852, 899
BpuMI	CCSGG	2 cut(s)	336, 980
BsaI	GGTCTC	1 cut(s)	479
BsaWI	WCCGGW	2 cut(s)	114, 231
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 190, 965, 985
Bse1I	ACTGG	1 cut(s)	701
Bse3DI	GCAATG	2 cut(s)	819, 885
BseBI	CCWGG	2 cut(s)	30, 435
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	4 cut(s)	114, 190, 965, 985
BseMI	GCAATG	2 cut(s)	819, 885
BseMII	CTCAG	2 cut(s)	175, 756
BseNI	ACTGG	1 cut(s)	701
BseRI	GAGGAG	1 cut(s)	462
BseXI	GCAGC	4 cut(s)	99, 102, 620, 649
BseYI	CCCAGC	1 cut(s)	782
BshFI	GGCC	3 cut(s)	107, 173, 183
BsiHKAI	GWGCWC	2 cut(s)	392, 885
BsiSI	CCGG	4 cut(s)	115, 232, 336, 980
BslFI	GGGAC	2 cut(s)	51, 679
BslI	CCNNNNNNNGG	4 cut(s)	114, 190, 965, 985
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	2 cut(s)	51, 679
BsmI	GAATGC	2 cut(s)	223, 469
BsnI	GGCC	3 cut(s)	107, 173, 183
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	392, 885
Bsp1407I	TGTACA	2 cut(s)	342, 499
Bsp143I	GATC	1 cut(s)	910
Bsp1720I	GCTNAGC	1 cut(s)	545
BspACI	CCGC	2 cut(s)	357, 489
BspANI	GGCC	3 cut(s)	107, 173, 183
BspCNI	CTCAG	2 cut(s)	174, 757
BspLI	GGNNCC	1 cut(s)	978
BspMAI	CTGCAG	1 cut(s)	639
BspTI	CTTAAG	1 cut(s)	932
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	2 cut(s)	819, 885
BsrGI	TGTACA	2 cut(s)	342, 499
BsrI	ACTGG	1 cut(s)	701
BssMI	GATC	1 cut(s)	910
Bst2UI	CCWGG	2 cut(s)	30, 435
Bst4CI	ACNGT	2 cut(s)	215, 349
Bst6I	CTCTTC	1 cut(s)	682
BstAFI	CTTAAG	1 cut(s)	932
BstAUI	TGTACA	2 cut(s)	342, 499
BstC8I	GCNNGC	2 cut(s)	105, 721
BstDEI	CTNAG	3 cut(s)	161, 545, 765
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	1 cut(s)	913
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	1 cut(s)	910
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	2 cut(s)	30, 435
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	4 cut(s)	28, 334, 433, 978
BstSFI	CTRYAG	2 cut(s)	441, 635
BstV1I	GCAGC	4 cut(s)	99, 102, 620, 649
BsuI	GTATCC	1 cut(s)	829
BsuRI	GGCC	3 cut(s)	107, 173, 183
BtsCI	GGATG	1 cut(s)	532
Cac8I	GCNNGC	2 cut(s)	105, 721
Cfr13I	GGNCC	4 cut(s)	106, 171, 182, 976
Csp6I	GTAC	3 cut(s)	343, 500, 673
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviAII	CATG	3 cut(s)	676, 830, 874
CviQI	GTAC	3 cut(s)	343, 500, 673
DdeI	CTNAG	3 cut(s)	161, 545, 765
DpnI	GATC	1 cut(s)	912
DpnII	GATC	1 cut(s)	910
DraI	TTTAAA	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	682
EarI	CTCTTC	1 cut(s)	682
Ecl136II	GAGCTC	1 cut(s)	883
Eco24I	GRGCYC	1 cut(s)	885
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	976
Eco53kI	GAGCTC	1 cut(s)	883
EcoICRI	GAGCTC	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	28, 433
EcoT38I	GRGCYC	1 cut(s)	885
FaeI	CATG	3 cut(s)	679, 833, 877
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FaqI	GGGAC	2 cut(s)	51, 679
FatI	CATG	3 cut(s)	675, 829, 873
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	4 cut(s)	88, 91, 609, 638
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	885
Fsp4HI	GCNGC	4 cut(s)	88, 91, 609, 638
FspBI	CTAG	2 cut(s)	60, 195
GluI	GCNGC	4 cut(s)	88, 91, 609, 638
GsaI	CCCAGC	1 cut(s)	786
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	3 cut(s)	107, 173, 183
HapII	CCGG	4 cut(s)	115, 232, 336, 980
Hin1II	CATG	3 cut(s)	679, 833, 877
HinfI	GANTC	5 cut(s)	309, 430, 494, 736, 753
HpaII	CCGG	4 cut(s)	115, 232, 336, 980
HphI	GGTGA	1 cut(s)	980
Hpy166II	GTNNAC	3 cut(s)	343, 345, 976
Hpy188I	TCNGA	4 cut(s)	646, 735, 745, 915
Hpy188III	TCNNGA	2 cut(s)	590, 869
Hpy8I	GTNNAC	3 cut(s)	343, 345, 976
HpyAV	CCTTC	2 cut(s)	392, 892
HpyCH4III	ACNGT	2 cut(s)	215, 349
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	5 cut(s)	422, 598, 637, 833, 923
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	3 cut(s)	161, 545, 765
HpySE526I	ACGT	1 cut(s)	947
Hsp92II	CATG	3 cut(s)	679, 833, 877
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	1 cut(s)	910
LmnI	GCTCC	3 cut(s)	395, 449, 470
Lsp1109I	GCAGC	4 cut(s)	99, 102, 620, 649
MaeI	CTAG	2 cut(s)	60, 195
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	2 cut(s)	622, 943
MalI	GATC	1 cut(s)	912
MboI	GATC	1 cut(s)	910
MboII	GAAGA	3 cut(s)	337, 699, 950
MfeI	CAATTG	1 cut(s)	847
MhlI	GDGCHC	2 cut(s)	392, 885
MluCI	AATT	8 cut(s)	128, 259, 562, 602, 647, 835, 847, 917
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	7 cut(s)	131, 170, 419, 440, 700, 800, 874
MseI	TTAA	4 cut(s)	369, 384, 630, 933
MslI	CAYNNNNRTG	1 cut(s)	966
MspA1I	CMGCKG	2 cut(s)	491, 764
MspCI	CTTAAG	1 cut(s)	932
MspI	CCGG	4 cut(s)	115, 232, 336, 980
MspR9I	CCNGG	4 cut(s)	30, 336, 435, 980
MunI	CAATTG	1 cut(s)	847
Mva1269I	GAATGC	2 cut(s)	223, 469
MvaI	CCWGG	2 cut(s)	30, 435
MwoI	GCNNNNNNNGC	1 cut(s)	617
NciI	CCSGG	2 cut(s)	336, 980
NdeII	GATC	1 cut(s)	910
NlaIII	CATG	3 cut(s)	679, 833, 877
NlaIV	GGNNCC	1 cut(s)	978
NspI	RCATGY	1 cut(s)	877
PctI	GAATGC	2 cut(s)	223, 469
PfeI	GAWTC	4 cut(s)	309, 430, 494, 736
PflMI	CCANNNNNTGG	1 cut(s)	965
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	4 cut(s)	89, 92, 610, 639
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
PsiI	TTATAA	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	885
Psp6I	CCWGG	2 cut(s)	28, 433
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	2 cut(s)	28, 433
PspN4I	GGNNCC	1 cut(s)	978
PspPI	GGNCC	4 cut(s)	106, 171, 182, 976
PstI	CTGCAG	1 cut(s)	639
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	344, 501, 674
RsaNI	GTAC	3 cut(s)	343, 500, 673
RseI	CAYNNNNRTG	1 cut(s)	966
SacI	GAGCTC	1 cut(s)	885
SaqAI	TTAA	4 cut(s)	369, 384, 630, 933
SatI	GCNGC	4 cut(s)	88, 91, 609, 638
Sau3AI	GATC	1 cut(s)	910
Sau96I	GGNCC	4 cut(s)	106, 171, 182, 976
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	4 cut(s)	30, 336, 435, 980
SduI	GDGCHC	2 cut(s)	392, 885
SfcI	CTRYAG	2 cut(s)	441, 635
SinI	GGWCC	1 cut(s)	976
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	4 cut(s)	413, 867, 878, 932
SmoI	CTYRAG	4 cut(s)	413, 867, 878, 932
Sse9I	AATT	8 cut(s)	128, 259, 562, 602, 647, 835, 847, 917
SsiI	CCGC	2 cut(s)	357, 489
SspMI	CTAG	2 cut(s)	60, 195
SstI	GAGCTC	1 cut(s)	885
StyD4I	CCNGG	4 cut(s)	28, 334, 433, 978
TaaI	ACNGT	2 cut(s)	215, 349
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	1 cut(s)	312
TaqII	GACCGA	1 cut(s)	715
TasI	AATT	8 cut(s)	128, 259, 562, 602, 647, 835, 847, 917
TatI	WGTACW	3 cut(s)	342, 499, 672
TfiI	GAWTC	4 cut(s)	309, 430, 494, 736
Tru1I	TTAA	4 cut(s)	369, 384, 630, 933
Tru9I	TTAA	4 cut(s)	369, 384, 630, 933
TseI	GCWGC	4 cut(s)	87, 90, 608, 637
TspDTI	ATGAA	4 cut(s)	226, 411, 476, 832
Van91I	CCANNNNNTGG	1 cut(s)	965
Vha464I	CTTAAG	1 cut(s)	932
VpaK11BI	GGWCC	1 cut(s)	976
XapI	RAATTY	3 cut(s)	128, 835, 917
XceI	RCATGY	1 cut(s)	877
XspI	CTAG	2 cut(s)	60, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.