Rroxscaffold_7G00212610

UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017397
Physical Location & Seq
Forward (+)
63117117 .. 63118774
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212610.1

Sequence Viewer

Length: 504 bp
ATGGCCGCCGCCCACCAAGCTACAGAATACTGTGATGAGCATTCAATCCGGTTCATTGTCATTGGCAAAGGCTCAAATTGTTTGTTTGATGATTTGGGTTTTGATGGTTGTGTTATACTCAACCGAATCGAGTTCTTGGAAAAGAAAGAACCCGGCGTGTACACAGTTGGAAGCGGTTTTCGTTTTAACAAGTTGGGGCTTAAGTGCTCCAATGAAGGATTTTCGGGACGTGAGTTTGCTGGAGGGATTCCTGGTTCTGCAGGAGGAGCTGTTTATATGAATGCTGGAGCAAGTGGGCAGGAGACTTCTGATTCTGTACATAGTGTTGATATTATAACAAAGGATGGAAAGTTTCATAGGCTTAGCAGGAGTGATCTCAATTTCGGGTATCGGTCATCTCCATTTCAAGATATGCAAGAATTGGCAGCTATAAGTGCTGTTACATTTAGACTGCAGCAATCGGAATCAGCAAAGCGAACACTATATGAGTACATGGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_4 MurB_C

Protein Analysis

167

Amino Acids

18.32

Weight (kDa)

5.81

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 7 - 122 2.9e-17 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017397)

Species Orthologous Gene IDs
prunus_persica Prupe.8G147100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0252551
rosa_laevigata RLG00000015089
rosa_multiflora Rmu_sc0002016.1_g000028
rosa_roxburghii Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa Rorug05G0536800
rosa_samantha Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana Rw6G004760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AciI CCGC 3 cut(s) 6, 9, 174
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 3 cut(s) 161, 318, 491
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 2 cut(s) 45, 407
AjiI CACGTC 1 cut(s) 230
AjnI CCWGG 1 cut(s) 250
AloI GAACNNNNNNTCC 2 cut(s) 238, 270
AluBI AGCT 3 cut(s) 20, 269, 428
AluI AGCT 3 cut(s) 20, 269, 428
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 296
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 425, 454
AsuC2I CCSGG 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 437, 466
BccI CCATC 2 cut(s) 98, 338
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 3 cut(s) 21, 258, 452
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 4 cut(s) 6, 9, 426, 455
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 4 cut(s) 7, 10, 427, 456
Bme1390I CCNGG 2 cut(s) 153, 252
BmgBI CACGTC 1 cut(s) 230
BmrFI CCNGG 2 cut(s) 153, 252
BpmI CTGGAG 2 cut(s) 261, 306
Bpu1102I GCTNAGC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
BseBI CCWGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 2 cut(s) 437, 466
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 2 cut(s) 49, 153
BslFI GGGAC 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 2 cut(s) 40, 286
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 2 cut(s) 159, 316
Bsp143I GATC 1 cut(s) 373
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 3 cut(s) 6, 9, 174
BspANI GGCC 1 cut(s) 5
BspMAI CTGCAG 2 cut(s) 262, 456
BspTI CTTAAG 1 cut(s) 200
BsrGI TGTACA 2 cut(s) 159, 316
BssMI GATC 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 32, 166
BstAFI CTTAAG 1 cut(s) 200
BstAUI TGTACA 2 cut(s) 159, 316
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 3 cut(s) 17, 266, 434
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 151, 250
BstSFI CTRYAG 3 cut(s) 21, 258, 452
BstV1I GCAGC 2 cut(s) 437, 466
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 349
Csp6I GTAC 3 cut(s) 160, 317, 490
CviAII CATG 1 cut(s) 493
CviJI RGCY 7 cut(s) 5, 20, 72, 199, 269, 361, 428
CviKI_1 RGCY 7 cut(s) 5, 20, 72, 199, 269, 361, 428
CviQI GTAC 3 cut(s) 160, 317, 490
DdeI CTNAG 1 cut(s) 362
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 496
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 492
Fnu4HI GCNGC 4 cut(s) 6, 9, 426, 455
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 4 cut(s) 6, 9, 426, 455
GluI GCNGC 4 cut(s) 6, 9, 426, 455
GsuI CTGGAG 2 cut(s) 261, 306
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 49, 153
Hin1II CATG 1 cut(s) 496
HinfI GANTC 4 cut(s) 126, 247, 311, 464
HpaII CCGG 2 cut(s) 49, 153
Hpy166II GTNNAC 2 cut(s) 160, 162
Hpy188I TCNGA 2 cut(s) 310, 463
Hpy188III TCNNGA 2 cut(s) 225, 407
Hpy8I GTNNAC 2 cut(s) 160, 162
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 2 cut(s) 32, 166
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 260, 415, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 266, 434
HpyF3I CTNAG 1 cut(s) 362
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 1 cut(s) 496
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 3 cut(s) 212, 266, 287
LpnPI CCDG 9 cut(s) 62, 166, 225, 237, 246, 264, 270, 284, 352
Lsp1109I GCAGC 2 cut(s) 437, 466
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 439
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 3 cut(s) 76, 379, 419
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 2 cut(s) 236, 257
MseI TTAA 2 cut(s) 186, 201
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 2 cut(s) 49, 153
MspR9I CCNGG 2 cut(s) 153, 252
Mva1269I GAATGC 2 cut(s) 40, 286
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 3 cut(s) 17, 266, 434
NciI CCSGG 1 cut(s) 153
NdeII GATC 1 cut(s) 373
NlaIII CATG 1 cut(s) 496
PctI GAATGC 2 cut(s) 40, 286
PfeI GAWTC 4 cut(s) 126, 247, 311, 464
PkrI GCNGC 4 cut(s) 7, 10, 427, 456
PsiI TTATAA 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PstI CTGCAG 2 cut(s) 262, 456
RsaI GTAC 3 cut(s) 161, 318, 491
RsaNI GTAC 3 cut(s) 160, 317, 490
SaqAI TTAA 2 cut(s) 186, 201
SatI GCNGC 4 cut(s) 6, 9, 426, 455
Sau3AI GATC 1 cut(s) 373
ScrFI CCNGG 2 cut(s) 153, 252
SduI GDGCHC 1 cut(s) 209
SetI ASST 5 cut(s) 22, 232, 271, 430, 503
SfcI CTRYAG 3 cut(s) 21, 258, 452
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 3 cut(s) 76, 379, 419
SsiI CCGC 3 cut(s) 6, 9, 174
StyD4I CCNGG 2 cut(s) 151, 250
TaaI ACNGT 2 cut(s) 32, 166
TaiI ACGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 129
TaqII GACCGA 1 cut(s) 381
TasI AATT 3 cut(s) 76, 379, 419
TatI WGTACW 3 cut(s) 159, 316, 489
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 4 cut(s) 126, 247, 311, 464
Tru1I TTAA 2 cut(s) 186, 201
Tru9I TTAA 2 cut(s) 186, 201
TseI GCWGC 2 cut(s) 425, 454
TspDTI ATGAA 4 cut(s) 43, 228, 293, 344
Vha464I CTTAAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.