Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017397

Physical Location & Seq

Genomic Coordinates Reverse (-)

4498149 .. 4498879

Gene Structure 731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG045700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCAATCTCTCTCTGTTACAACTCTCCTGGACTGTTGTTGCTACATTCACCAAAAACCAGAGGCCCTTTTCTCTGCAATCATAGCAGCAGCAAACAAGAACAGACCCAGAACCGGAACGAGTTGAAATTTGTTCGAGGCAAGAAGCTGTTGAAACACCTCAGCACTTGGGGAATTGGTGGCCCTTGTAATCATTTCATCCAAGTATTCGATCAGACCCAGCTTGTTTCTGCTGTCAGATACTGTGATGAGCATTCAATCCGGTTCATTGTCATTGGCAAAGGCTCAAATTGTTTGTTTGATGATTTGGGTTTTGATGGTTGTGTTATACTCAACCGAATCGAGTTCTTGGAGAAGAAAGAACCCGGCGTGTACACCGTTGGAAGCGGTTTTCGTTTTAACAAGTTGGGGGTTAAGTGCTCCAATGAAGGATTTACGGGACTTGAGTTTGCTGGAGGGATTCCTGGTTCTGTAGGAGGAGCTATTTATATGAATGCTGGAGCAAATGGCAGGAGACTGCTGATTCTGTACATAGTGTTGATATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_4 MurB_C

Protein Analysis

182

Amino Acids

20.03

Weight (kDa)

9.14

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	66 - 172	5.6e-16	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017397)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G147100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0252551
rosa_laevigata	RLG00000015089
rosa_multiflora	Rmu_sc0002016.1_g000028
rosa_roxburghii	Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa	Rorug05G0536800
rosa_samantha	Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana	Rw6G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	547
AciI	CCGC	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	2 cut(s)	374, 530
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	127, 154, 258
AjnI	CCWGG	2 cut(s)	28, 463
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	3 cut(s)	148, 223, 482
AluI	AGCT	3 cut(s)	148, 223, 482
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	508
AlwNI	CAGNNNCTG	1 cut(s)	243
AoxI	GGCC	2 cut(s)	64, 181
ApeKI	GCWGC	2 cut(s)	87, 90
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	65, 182
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	99, 102
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	30, 465
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	508
BfmI	CTRYAG	1 cut(s)	471
BisI	GCNGC	2 cut(s)	88, 91
BlsI	GCNGC	2 cut(s)	89, 92
Bme1390I	CCNGG	3 cut(s)	30, 366, 465
BmgT120I	GGNCC	2 cut(s)	65, 182
BmrFI	CCNGG	3 cut(s)	30, 366, 465
BpmI	CTGGAG	2 cut(s)	474, 519
Bpu10I	CCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	366
BsaWI	WCCGGW	2 cut(s)	114, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	30, 465
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	492
BseXI	GCAGC	2 cut(s)	99, 102
BseYI	CCCAGC	1 cut(s)	219
BshFI	GGCC	2 cut(s)	66, 183
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	3 cut(s)	115, 262, 366
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	2 cut(s)	253, 499
BsnI	GGCC	2 cut(s)	66, 183
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp1407I	TGTACA	2 cut(s)	372, 528
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	2 cut(s)	66, 183
BspCNI	CTCAG	1 cut(s)	174
BsrGI	TGTACA	2 cut(s)	372, 528
BssMI	GATC	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	30, 465
Bst4CI	ACNGT	3 cut(s)	36, 245, 379
BstAUI	TGTACA	2 cut(s)	372, 528
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	2 cut(s)	30, 465
BstSCI	CCNGG	3 cut(s)	28, 364, 463
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	99, 102
BsuRI	GGCC	2 cut(s)	66, 183
BtsCI	GGATG	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	65, 182
Csp6I	GTAC	2 cut(s)	373, 529
CviJI	RGCY	6 cut(s)	66, 148, 183, 223, 285, 482
CviKI_1	RGCY	6 cut(s)	66, 148, 183, 223, 285, 482
CviQI	GTAC	2 cut(s)	373, 529
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	28, 463
FaiI	YATR	6 cut(s)	84, 329, 489, 491, 533, 547
FaqI	GGGAC	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	88, 91
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	88, 91
GluI	GCNGC	2 cut(s)	88, 91
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	2 cut(s)	474, 519
HaeIII	GGCC	2 cut(s)	66, 183
HapII	CCGG	3 cut(s)	115, 262, 366
HinfI	GANTC	3 cut(s)	339, 460, 523
HpaII	CCGG	3 cut(s)	115, 262, 366
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	2 cut(s)	373, 375
Hpy188I	TCNGA	2 cut(s)	216, 239
Hpy8I	GTNNAC	2 cut(s)	373, 375
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	3 cut(s)	36, 245, 379
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	3 cut(s)	425, 479, 500
Lsp1109I	GCAGC	2 cut(s)	99, 102
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	3 cut(s)	128, 174, 289
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	5 cut(s)	56, 131, 170, 449, 470
MseI	TTAA	2 cut(s)	399, 414
MspI	CCGG	3 cut(s)	115, 262, 366
MspR9I	CCNGG	3 cut(s)	30, 366, 465
Mva1269I	GAATGC	2 cut(s)	253, 499
MvaI	CCWGG	2 cut(s)	30, 465
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	1 cut(s)	211
PctI	GAATGC	2 cut(s)	253, 499
PfeI	GAWTC	3 cut(s)	339, 460, 523
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	89, 92
PsiI	TTATAA	1 cut(s)	547
Psp6I	CCWGG	2 cut(s)	28, 463
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	2 cut(s)	28, 463
PspPI	GGNCC	2 cut(s)	65, 182
PstNI	CAGNNNCTG	1 cut(s)	243
RsaI	GTAC	2 cut(s)	374, 530
RsaNI	GTAC	2 cut(s)	373, 529
SaqAI	TTAA	2 cut(s)	399, 414
SatI	GCNGC	2 cut(s)	88, 91
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	2 cut(s)	65, 182
ScrFI	CCNGG	3 cut(s)	30, 366, 465
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	4 cut(s)	150, 162, 225, 484
SfcI	CTRYAG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	128, 174, 289
SsiI	CCGC	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	28, 364, 463
TaaI	ACNGT	3 cut(s)	36, 245, 379
TaqI	TCGA	3 cut(s)	136, 210, 342
TasI	AATT	3 cut(s)	128, 174, 289
TatI	WGTACW	2 cut(s)	372, 528
TfiI	GAWTC	3 cut(s)	339, 460, 523
Tru1I	TTAA	2 cut(s)	399, 414
Tru9I	TTAA	2 cut(s)	399, 414
TseI	GCWGC	2 cut(s)	87, 90
TspDTI	ATGAA	4 cut(s)	187, 256, 441, 506
XapI	RAATTY	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.