Rroxscaffold_7G00212620

UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017397
Physical Location & Seq
Forward (+)
63118945 .. 63119193
249 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00212620.1

Sequence Viewer

Length: 249 bp
ATGGGAGTCGCAGCAGCTGAGTTGATAGAGAAAGTTGGGTTGAAAGGTTTTAGAGTGGGAGGGGCAATGGTATCCAAAATCCATGCAAATTTTTTCATCAATTGTGGTGGCTTAACCTCTCAAGACATGCTTGAGCTCATTGCCAGAGTGAAGGAAAAGGTTGATCAGAAATTTGCAGTACAACTTAAGGAAGAAGTAACGTATATCAATCCACATTATGGTGATGTGAACCCAGATAAAGACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_4 MurB_C

Protein Analysis

82

Amino Acids

9.05

Weight (kDa)

6.72

Isoelectric Point (pI)

14.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MurB_C PF02873 4 - 69 1.5e-22 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017397)

Species Orthologous Gene IDs
prunus_persica Prupe.8G147100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0252551
rosa_laevigata RLG00000015089
rosa_multiflora Rmu_sc0002016.1_g000028
rosa_roxburghii Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa Rorug05G0536800
rosa_samantha Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana Rw6G004760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 218
AcsI RAATTY 2 cut(s) 88, 170
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 218
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 2 cut(s) 17, 136
AluI AGCT 2 cut(s) 17, 136
Alw21I GWGCWC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 11, 14
ApoI RAATTY 2 cut(s) 88, 170
AsuHPI GGTGA 1 cut(s) 233
BanII GRGCYC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 23, 26
BciVI GTATCC 1 cut(s) 82
BclI TGATCA 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 185
BfuI GTATCC 1 cut(s) 82
BisI GCNGC 2 cut(s) 12, 15
BlsI GCNGC 2 cut(s) 13, 16
BpuEI CTTGAG 2 cut(s) 105, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse3DI GCAATG 2 cut(s) 72, 138
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 2 cut(s) 72, 138
BseMII CTCAG 1 cut(s) 9
BseXI GCAGC 2 cut(s) 23, 26
BsiHKAI GWGCWC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 10
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 72, 138
BssMI GATC 1 cut(s) 163
BstAFI CTTAAG 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 23, 26
BsuI GTATCC 1 cut(s) 82
CaiI CAGNNNCTG 1 cut(s) 17
Csp6I GTAC 1 cut(s) 179
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 2 cut(s) 83, 127
CviJI RGCY 3 cut(s) 17, 111, 136
CviKI_1 RGCY 3 cut(s) 17, 111, 136
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 2 cut(s) 86, 130
FaiI YATR 4 cut(s) 84, 128, 204, 219
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 2 cut(s) 82, 126
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 12, 15
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 12, 15
GluI GCNGC 2 cut(s) 12, 15
Hin1II CATG 2 cut(s) 86, 130
HinfI GANTC 1 cut(s) 6
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 86, 176
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 2 cut(s) 86, 130
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 1 cut(s) 157
Lsp1109I GCAGC 2 cut(s) 23, 26
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 203
MfeI CAATTG 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 3 cut(s) 88, 100, 170
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 2 cut(s) 53, 127
MseI TTAA 2 cut(s) 113, 186
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 185
MunI CAATTG 1 cut(s) 100
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 86, 130
NspI RCATGY 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 2 cut(s) 13, 16
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 219
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 113, 186
SatI GCNGC 2 cut(s) 12, 15
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 1 cut(s) 15
SduI GDGCHC 1 cut(s) 138
SetI ASST 6 cut(s) 19, 49, 119, 138, 162, 203
SgeI CNNG 6 cut(s) 95, 134, 139, 143, 156, 245
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 3 cut(s) 120, 131, 185
SmoI CTYRAG 3 cut(s) 120, 131, 185
Sse9I AATT 3 cut(s) 88, 100, 170
SstI GAGCTC 1 cut(s) 138
TaiI ACGT 1 cut(s) 203
TasI AATT 3 cut(s) 88, 100, 170
TatI WGTACW 1 cut(s) 178
Tru1I TTAA 2 cut(s) 113, 186
Tru9I TTAA 2 cut(s) 113, 186
TseI GCWGC 2 cut(s) 11, 14
TspDTI ATGAA 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 2 cut(s) 88, 170
XceI RCATGY 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.