Rh6CG045600

UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017397
Physical Location & Seq
Reverse (-)
4497565 .. 4498074
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG045600.1

Sequence Viewer

Length: 402 bp
ATGCAAGAATTGGCAGCTATAAGTGCTGTTACATTTAAACTGCAGCAATCGGAATCAGCAAAGCGAACACTATATGAGTACATGGAAAGGAGAAGAGTGTCCCAACCAGTTGGGGAACAAAGTGCTGGCTCGGTCTTTCGGAATCCATCTGATATGGGAGTCGCAGCAGCTGAGTTGATAGACAAGGCTGGGTTGAAAGGTTTTAGAGTGGGAGGGGCAATGGTATCCAAAATCCATGCAAATTTTTTCATCAATTGTGGTGGCTCAACCTCTCAAGACATGCTTGAGCTCATTGCCAGAGTGAAGGAAAAGGTTGATCAGAAATTTGCAGTACAACTTAAGGAAGAAGTAACGTATATCAATCCACATTATGGTGATGTGAACCCGGATAAAGACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_4 MurB_C

Protein Analysis

133

Amino Acids

14.74

Weight (kDa)

7.84

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MurB_C PF02873 22 - 120 4.4e-33 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017397)

Species Orthologous Gene IDs
prunus_persica Prupe.8G147100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0252551
rosa_laevigata RLG00000015089
rosa_multiflora Rmu_sc0002016.1_g000028
rosa_roxburghii Rroxscaffold_7G00212610 Rroxscaffold_7G00212620
rosa_rugosa Rorug05G0536800
rosa_samantha Rh6AG053100 Rh6BG047000 Rh6CG045600 Rh6CG045700 Rh6DG041400
rosa_wichuraiana Rw6G004760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 371
AcsI RAATTY 2 cut(s) 241, 323
AfaI GTAC 2 cut(s) 80, 333
AfiI CCNNNNNNNGG 1 cut(s) 371
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 3 cut(s) 17, 170, 289
AluI AGCT 3 cut(s) 17, 170, 289
Alw21I GWGCWC 1 cut(s) 291
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 14, 43, 164, 167
ApoI RAATTY 2 cut(s) 241, 323
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 386
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 26, 55, 176, 179
BccI CCATC 1 cut(s) 154
BciVI GTATCC 1 cut(s) 235
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 338
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 4 cut(s) 15, 44, 165, 168
BlsI GCNGC 4 cut(s) 16, 45, 166, 169
Bme1390I CCNGG 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 386
BpuEI CTTGAG 2 cut(s) 258, 305
BpuMI CCSGG 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 2 cut(s) 225, 291
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 2 cut(s) 225, 291
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 4 cut(s) 26, 55, 176, 179
BseYI CCCAGC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 386
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 45
BspTI CTTAAG 1 cut(s) 338
BsrDI GCAATG 2 cut(s) 225, 291
BsrI ACTGG 1 cut(s) 107
BssMI GATC 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 88
BstAFI CTTAAG 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 171
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 41
BstV1I GCAGC 4 cut(s) 26, 55, 176, 179
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuI GTATCC 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 170
Csp6I GTAC 2 cut(s) 79, 332
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 3 cut(s) 82, 236, 280
CviJI RGCY 6 cut(s) 17, 129, 170, 188, 264, 289
CviKI_1 RGCY 6 cut(s) 17, 129, 170, 188, 264, 289
CviQI GTAC 2 cut(s) 79, 332
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraI TTTAAA 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 291
FaeI CATG 3 cut(s) 85, 239, 283
FaiI YATR 9 cut(s) 20, 73, 75, 83, 155, 237, 281, 357, 372
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 81, 235, 279
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 4 cut(s) 15, 44, 165, 168
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 4 cut(s) 15, 44, 165, 168
GluI GCNGC 4 cut(s) 15, 44, 165, 168
GsaI CCCAGC 1 cut(s) 192
HapII CCGG 1 cut(s) 386
Hin1II CATG 3 cut(s) 85, 239, 283
HinfI GANTC 3 cut(s) 53, 142, 159
HpaII CCGG 1 cut(s) 386
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 4 cut(s) 52, 141, 151, 321
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 4, 43, 239, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 3 cut(s) 85, 239, 283
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 316
LpnPI CCDG 4 cut(s) 111, 120, 174, 310
Lsp1109I GCAGC 4 cut(s) 26, 55, 176, 179
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 28, 349
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 105, 356
MfeI CAATTG 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 4 cut(s) 8, 241, 253, 323
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 2 cut(s) 206, 280
MseI TTAA 2 cut(s) 36, 339
MslI CAYNNNNRTG 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 170
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 386
NdeII GATC 1 cut(s) 316
NlaIII CATG 3 cut(s) 85, 239, 283
NspI RCATGY 1 cut(s) 283
PfeI GAWTC 2 cut(s) 53, 142
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 4 cut(s) 16, 45, 166, 169
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 291
PspFI CCCAGC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 80, 333
RsaNI GTAC 2 cut(s) 79, 332
RseI CAYNNNNRTG 1 cut(s) 372
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 36, 339
SatI GCNGC 4 cut(s) 15, 44, 165, 168
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 1 cut(s) 291
SetI ASST 7 cut(s) 19, 172, 202, 272, 291, 315, 356
SfcI CTRYAG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 3 cut(s) 273, 284, 338
SmoI CTYRAG 3 cut(s) 273, 284, 338
Sse9I AATT 4 cut(s) 8, 241, 253, 323
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 384
TaiI ACGT 1 cut(s) 356
TaqII GACCGA 1 cut(s) 121
TasI AATT 4 cut(s) 8, 241, 253, 323
TatI WGTACW 2 cut(s) 78, 331
TfiI GAWTC 2 cut(s) 53, 142
Tru1I TTAA 2 cut(s) 36, 339
Tru9I TTAA 2 cut(s) 36, 339
TseI GCWGC 4 cut(s) 14, 43, 164, 167
TspDTI ATGAA 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 371
Vha464I CTTAAG 1 cut(s) 338
XapI RAATTY 2 cut(s) 241, 323
XceI RCATGY 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.