Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012576

Physical Location & Seq

Genomic Coordinates Forward (+)

17372073 .. 17376391

Gene Structure 4319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G168300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGTCGTTGGCTTGTTGTTGGAGGCTCACTCTGACGTTCCCACCAACCACGCCGCGTTTCTCTAGCAGAAGCCGAAGTGGGTTTCGTTACAGAGCTTATGCTGAACAAGACCATGCAGCCGCCAATGGAAGCTCAAACAAGAAGGAAAATAAGAAGGTTGTCGTTGTTGGCTCTGGCTGGGCTGGCCTTGGCGCTGCTCACCACCTCTCTAACCAGGGTTTTGATGTCACTGTTCTTGAAAGTGGTAATGACTTGGGTGGACTTGAAGAAGTTGGTATCCGAGGTTATTGGTATCCCTACCAGAACATTTTCAACCTTGTTGATGAGCTGGGTATCAAACCATTCACTAACTGGACAAAATTTGCACAATATTCAGCAGAGGGATTGGAGGTTGAATTTCCAGTATTTCAAGACCTTCCTCAATTGCCAACTCCACTGGGAACCTTATTCTATACACAGTTTGTTCAGCTTCCATTGGTTGATAGATTAACAGCGGTTGCCTTAACGGCGGCAGTGATCGATTTTGACAACACGGATACAGCCTGGAGAAAATATGATTCAATTACCGCAAGGGAGCTTTTTAAGCAGTTTGGCTGCTCAGAAAGGCTTTATCAGAATGTCTTATCACCATTGCTTCAAGTGGGTCTCTTTGCTCCAGCAGAACAATGTAGTGCTGCCGCAACTCTGGGCTTGCTGTCTTACATCCTTGCTCACCAGAAAGATTTCGATCTTGTATGGTGTCGTGGAACAAGTAGAGAAAGGATTTTCAAGCCCTGGGTGGAGTCTTTGACGGCTAAAGGCTGCAAATTTGAGAAGCGTATAAGAGTAACAGACTTCTTAATTAATGAGGAAACAGGTTGTGTTTCAGAAGTAATTTGCGGTAAAGAAATTTATAATGCTGATGCTGTTGTCTTAGCTGTTGGAATCTCCACTCTTCAAAAACTTATTGAAAATAGTGCAGTGTTGTGTACAAGGGAGGAGTTTCTTAAGGTTTTGAACTTGGCTAGCATTGATGTACTCTCTGTTAAGCTCTGGCTCGATAGGAAGGTTAACATTCCAAATGCAAGTAATGCTTGCTCTGGATTTGATGATTCATTTGGGTGGACTTTCTTTGATTTGAATGCAATCCATGACGAACATAAAGATAGTTCGGTAACAGTGTTACAAGCTGATTTTTATCGTGCCAATGAGTTGTTGCCGCTGAAGGATGAACAAATTGTTTCCAAGGTGACATCTTACCTGTCAAACTGCATCAAGGACTTCAAGAATGCTACTGTGACAGATAAGGAGATTGGCAGATTTCCAAACTCCTTGACTCACTTCTTTCCTGGCTCATATAAGGACATGATGCGTGGCTCTACAACTTTCCCGAACTTGTTCATGGCTGGAGACTGGATTATAACCCGACACGGTTCATGGTCACAGGAGAAATCTTATGTCACGGGACTTGAAGCTGCCAACCGCACAGTAGACTATCTTGAAGAAGGAAGCTTTGCCAAAATCATTCCTGTAGAGGAAGATGAACCTCATATTCAAGCACTTCGCAGCCTTAACAGAAGCTTCAATGAGATCACAGCACAATTTCCATTGTCTAGTTACTTCCTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

537

Amino Acids

60.21

Weight (kDa)

5.46

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15600
malus_domestica	MD05G1124600.v1.1
prunus_persica	Prupe.8G168300_v2.0.a1
pyrus_communis	pycom05g11860
rosa_chinensis	RchiOBHm_Chr6g0255801 RchiOBHm_Chr6g0278781 RchiOBHm_Chr6g0278801
rosa_laevigata	RLG00000013193
rosa_multiflora	Rmu_sc0004380.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353520 Rroxscaffold_7G00189630 Rroxscaffold_7G00189900
rosa_rugosa	Rorug06G0119000
rosa_samantha	Rh5BG115500 Rh6AG227700 Rh6BG233300 Rh6CG235800 Rh6DG227000
rosa_wichuraiana	Rw6G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	894, 1400
AccI	GTMKAC	1 cut(s)	1470
AccII	CGCG	1 cut(s)	55
AciI	CCGC	9 cut(s)	53, 120, 494, 509, 567, 678, 879, 1199, 1462
AcsI	RAATTY	4 cut(s)	359, 395, 806, 888
AcuI	CTGAAG	1 cut(s)	1223
AfaI	GTAC	2 cut(s)	970, 1017
AflII	CTTAAG	1 cut(s)	986
AjnI	CCWGG	4 cut(s)	213, 542, 773, 1327
Alw26I	GTCTC	2 cut(s)	650, 1383
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	7 cut(s)	116, 194, 594, 674, 801, 1454, 1545
ApoI	RAATTY	4 cut(s)	359, 395, 806, 888
AseI	ATTAAT	1 cut(s)	843
Asp700I	GAANNNNTTC	3 cut(s)	308, 722, 1376
AspLEI	GCGC	1 cut(s)	194
AsuHPI	GGTGA	4 cut(s)	191, 618, 704, 1240
AsuNHI	GCTAGC	1 cut(s)	1004
BbvI	GCAGC	7 cut(s)	128, 181, 581, 661, 788, 1441, 1557
BceAI	ACGGC	2 cut(s)	522, 807
BciT130I	CCWGG	4 cut(s)	215, 544, 775, 1329
BciVI	GTATCC	3 cut(s)	287, 303, 529
BcoDI	GTCTC	2 cut(s)	650, 1383
BfaI	CTAG	3 cut(s)	63, 1005, 1593
BfmI	CTRYAG	1 cut(s)	1509
BfoI	RGCGCY	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	986
BfuI	GTATCC	3 cut(s)	287, 303, 529
BglI	GCCNNNNNGGC	1 cut(s)	506
Bme1390I	CCNGG	4 cut(s)	215, 544, 775, 1329
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	4 cut(s)	215, 544, 775, 1329
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	892, 1260, 1338
BmtI	GCTAGC	1 cut(s)	1008
BmuI	ACTGGG	1 cut(s)	446
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpmI	CTGGAG	3 cut(s)	565, 639, 1407
Bsa29I	ATCGAT	1 cut(s)	519
BsaBI	GATNNNNATC	2 cut(s)	726, 1176
BsaI	GGTCTC	1 cut(s)	650
BsaJI	CCNNGG	6 cut(s)	187, 214, 280, 773, 774, 1224
Bse1I	ACTGG	4 cut(s)	356, 401, 441, 1397
Bse3DI	GCAATG	1 cut(s)	629
Bse8I	GATNNNNATC	2 cut(s)	726, 1176
BseBI	CCWGG	4 cut(s)	215, 544, 775, 1329
BseCI	ATCGAT	1 cut(s)	519
BseDI	CCNNGG	6 cut(s)	187, 214, 280, 773, 774, 1224
BseGI	GGATG	2 cut(s)	702, 1213
BseJI	GATNNNNATC	2 cut(s)	726, 1176
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	4 cut(s)	356, 401, 441, 1397
BseRI	GAGGAG	1 cut(s)	992
BseXI	GCAGC	7 cut(s)	128, 181, 581, 661, 788, 1441, 1557
BseYI	CCCAGC	2 cut(s)	177, 328
BsgI	GTGCAG	1 cut(s)	978
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	1458
BsmAI	GTCTC	2 cut(s)	650, 1383
BsmFI	GGGAC	1 cut(s)	1458
BsmI	GAATGC	2 cut(s)	1126, 1273
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	650
Bsp1407I	TGTACA	1 cut(s)	968
Bsp143I	GATC	3 cut(s)	516, 727, 1569
BspACI	CCGC	9 cut(s)	53, 120, 494, 509, 567, 678, 879, 1199, 1462
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	611
BspDI	ATCGAT	1 cut(s)	519
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	442
BspOI	GCTAGC	1 cut(s)	1008
BspTI	CTTAAG	1 cut(s)	986
BspTNI	GGTCTC	1 cut(s)	650
BsrDI	GCAATG	1 cut(s)	629
BsrGI	TGTACA	1 cut(s)	968
BsrI	ACTGG	4 cut(s)	356, 401, 441, 1397
BssECI	CCNNGG	6 cut(s)	187, 214, 280, 773, 774, 1224
BssMI	GATC	3 cut(s)	516, 727, 1569
BssT1I	CCWWGG	2 cut(s)	187, 1224
Bst2UI	CCWGG	4 cut(s)	215, 544, 775, 1329
Bst4CI	ACNGT	6 cut(s)	232, 459, 1159, 1276, 1412, 1468
Bst6I	CTCTTC	1 cut(s)	939
BstAFI	CTTAAG	1 cut(s)	986
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstAUI	TGTACA	1 cut(s)	968
BstC8I	GCNNGC	4 cut(s)	184, 692, 1006, 1075
BstDEI	CTNAG	2 cut(s)	598, 913
BstF5I	GGATG	2 cut(s)	702, 1213
BstFNI	CGCG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	3 cut(s)	519, 730, 1572
BstMAI	GTCTC	2 cut(s)	650, 1383
BstMBI	GATC	3 cut(s)	516, 727, 1569
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 506, 583, 1070
BstNI	CCWGG	4 cut(s)	215, 544, 775, 1329
BstSCI	CCNGG	4 cut(s)	213, 542, 773, 1327
BstSFI	CTRYAG	1 cut(s)	1509
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	7 cut(s)	128, 181, 581, 661, 788, 1441, 1557
Bsu15I	ATCGAT	1 cut(s)	519
BsuI	GTATCC	3 cut(s)	287, 303, 529
BsuRI	GGCC	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	702, 1213
BtsI	GCAGTG	2 cut(s)	519, 966
BtsIMutI	CAGTG	5 cut(s)	228, 434, 519, 966, 1164
Cac8I	GCNNGC	4 cut(s)	184, 692, 1006, 1075
CfoI	GCGC	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	519
Csp6I	GTAC	2 cut(s)	969, 1016
CviAII	CATG	5 cut(s)	113, 1130, 1345, 1381, 1416
CviQI	GTAC	2 cut(s)	969, 1016
DdeI	CTNAG	2 cut(s)	598, 913
DpnI	GATC	3 cut(s)	518, 729, 1571
DpnII	GATC	3 cut(s)	516, 727, 1569
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
Eco130I	CCWWGG	2 cut(s)	187, 1224
Eco31I	GGTCTC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	1223
EcoRII	CCWGG	4 cut(s)	213, 542, 773, 1327
EcoT14I	CCWWGG	2 cut(s)	187, 1224
ErhI	CCWWGG	2 cut(s)	187, 1224
FaeI	CATG	5 cut(s)	116, 1133, 1348, 1384, 1419
FalI	AAGNNNNNCTT	2 cut(s)	1057, 1089
FaqI	GGGAC	1 cut(s)	1458
FatI	CATG	5 cut(s)	112, 1129, 1344, 1380, 1415
FblI	GTMKAC	1 cut(s)	1470
FokI	GGATG	2 cut(s)	689, 1220
FspBI	CTAG	3 cut(s)	63, 1005, 1593
GlaI	GCGC	1 cut(s)	193
GsaI	CCCAGC	2 cut(s)	181, 332
GsuI	CTGGAG	3 cut(s)	565, 639, 1407
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	5 cut(s)	116, 1133, 1348, 1384, 1419
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	1051
HindII	GTYRAC	1 cut(s)	1051
HindIII	AAGCTT	2 cut(s)	1489, 1558
HinfI	GANTC	5 cut(s)	557, 782, 924, 1091, 1315
HpaI	GTTAAC	1 cut(s)	1051
HphI	GGTGA	4 cut(s)	191, 618, 704, 1240
Hpy166II	GTNNAC	5 cut(s)	260, 969, 1051, 1104, 1471
Hpy188I	TCNGA	5 cut(s)	33, 281, 601, 615, 868
Hpy188III	TCNNGA	6 cut(s)	236, 410, 1080, 1264, 1369, 1478
Hpy8I	GTNNAC	5 cut(s)	260, 969, 1051, 1104, 1471
HpyAV	CCTTC	6 cut(s)	136, 148, 425, 1039, 1198, 1478
HpyCH4III	ACNGT	6 cut(s)	232, 459, 1159, 1276, 1412, 1468
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	7 cut(s)	116, 365, 804, 959, 1064, 1124, 1251
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 506, 583, 1070
HpyF3I	CTNAG	2 cut(s)	598, 913
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	5 cut(s)	116, 1133, 1348, 1384, 1419
HspAI	GCGC	1 cut(s)	192
KspAI	GTTAAC	1 cut(s)	1051
Kzo9I	GATC	3 cut(s)	516, 727, 1569
LmnI	GCTCC	2 cut(s)	574, 658
Lsp1109I	GCAGC	7 cut(s)	128, 181, 581, 661, 788, 1441, 1557
LweI	GCATC	3 cut(s)	892, 1260, 1338
MaeI	CTAG	3 cut(s)	63, 1005, 1593
MaeII	ACGT	1 cut(s)	35
MalI	GATC	3 cut(s)	518, 729, 1571
MboI	GATC	3 cut(s)	516, 727, 1569
MboII	GAAGA	4 cut(s)	278, 926, 1493, 1529
MfeI	CAATTG	1 cut(s)	422
MlyI	GAGTC	2 cut(s)	791, 1309
MmeI	TCCRAC	1 cut(s)	901
MroXI	GAANNNNTTC	3 cut(s)	308, 722, 1376
MseI	TTAA	9 cut(s)	488, 503, 582, 839, 843, 987, 1026, 1050, 1551
MslI	CAYNNNNRTG	1 cut(s)	1099
MspA1I	CMGCKG	2 cut(s)	494, 1201
MspCI	CTTAAG	1 cut(s)	986
MspR9I	CCNGG	4 cut(s)	215, 544, 775, 1329
MunI	CAATTG	1 cut(s)	422
Mva1269I	GAATGC	2 cut(s)	1126, 1273
MvaI	CCWGG	4 cut(s)	215, 544, 775, 1329
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	4 cut(s)	183, 506, 583, 1070
NdeII	GATC	3 cut(s)	516, 727, 1569
NheI	GCTAGC	1 cut(s)	1004
NlaIII	CATG	5 cut(s)	116, 1133, 1348, 1384, 1419
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	5 cut(s)	226, 1228, 1276, 1419, 1438
PacI	TTAATTAA	1 cut(s)	843
PasI	CCCWGGG	1 cut(s)	774
PctI	GAATGC	2 cut(s)	1126, 1273
PdmI	GAANNNNTTC	3 cut(s)	308, 722, 1376
PfeI	GAWTC	3 cut(s)	557, 924, 1091
PleI	GAGTC	2 cut(s)	790, 1309
PpsI	GAGTC	2 cut(s)	790, 1309
PshBI	ATTAAT	1 cut(s)	843
PsiI	TTATAA	2 cut(s)	894, 1400
Psp6I	CCWGG	4 cut(s)	213, 542, 773, 1327
PspFI	CCCAGC	2 cut(s)	177, 328
PspGI	CCWGG	4 cut(s)	213, 542, 773, 1327
PspN4I	GGNNCC	1 cut(s)	442
RsaI	GTAC	2 cut(s)	970, 1017
RsaNI	GTAC	2 cut(s)	969, 1016
RseI	CAYNNNNRTG	1 cut(s)	1099
SaqAI	TTAA	9 cut(s)	488, 503, 582, 839, 843, 987, 1026, 1050, 1551
Sau3AI	GATC	3 cut(s)	516, 727, 1569
SchI	GAGTC	2 cut(s)	791, 1309
ScrFI	CCNGG	4 cut(s)	215, 544, 775, 1329
SfaNI	GCATC	3 cut(s)	892, 1260, 1338
SfcI	CTRYAG	1 cut(s)	1509
SmiMI	CAYNNNNRTG	1 cut(s)	1099
SmlI	CTYRAG	1 cut(s)	986
SmoI	CTYRAG	1 cut(s)	986
SsiI	CCGC	9 cut(s)	53, 120, 494, 509, 567, 678, 879, 1199, 1462
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	3 cut(s)	63, 1005, 1593
StyD4I	CCNGG	4 cut(s)	213, 542, 773, 1327
StyI	CCWWGG	2 cut(s)	187, 1224
TaaI	ACNGT	6 cut(s)	232, 459, 1159, 1276, 1412, 1468
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	3 cut(s)	519, 726, 1038
TatI	WGTACW	2 cut(s)	968, 1015
TauI	GCSGC	5 cut(s)	55, 122, 512, 680, 1201
TfiI	GAWTC	3 cut(s)	557, 924, 1091
Tru1I	TTAA	9 cut(s)	488, 503, 582, 839, 843, 987, 1026, 1050, 1551
Tru9I	TTAA	9 cut(s)	488, 503, 582, 839, 843, 987, 1026, 1050, 1551
TscAI	CASTG	5 cut(s)	235, 441, 519, 966, 1164
TseFI	GTSAC	5 cut(s)	226, 1228, 1276, 1419, 1438
TseI	GCWGC	7 cut(s)	116, 194, 594, 674, 801, 1454, 1545
Tsp45I	GTSAC	5 cut(s)	226, 1228, 1276, 1419, 1438
TspDTI	ATGAA	5 cut(s)	1083, 1224, 1369, 1404, 1536
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	5 cut(s)	235, 441, 519, 966, 1164
Vha464I	CTTAAG	1 cut(s)	986
VspI	ATTAAT	1 cut(s)	843
XapI	RAATTY	4 cut(s)	359, 395, 806, 888
XcmI	CCANNNNNNNNNTGG	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	1470
XmnI	GAANNNNTTC	3 cut(s)	308, 722, 1376
XspI	CTAG	3 cut(s)	63, 1005, 1593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.