Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012576

Physical Location & Seq

Genomic Coordinates Reverse (-)

16289452 .. 16290160

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0119000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATCCTCAGGATTCTCGGAGGCAAGCACATGGTCGACCCCAGCATGGTCCGGGTTCTAGGTTGCTCGGCTTTCCACGACACCGCTCTCACCGACTTCGGCGACCTGTCGTACCTAGGCGGAGAGTGGCGGTGTGACGTGGCGTTTGCTGGTTTCGACGTTCCGATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTAGCTGGGATTAACCCACAAAGGAGAGCTGAGCTGATCAAGGTGTTGGATATTGATCTTTCATGGAGGTTGCATAAGGTCTCAGATGGTCAGAGAAGAAGGGTCCAGATCTGTATGGATCTGCTCAGACCATATAAGGTGCTTCTGCTTGATGAGATCACGGTGGACCTTATGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

127

Amino Acids

14.27

Weight (kDa)

5.85

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15600
malus_domestica	MD05G1124600.v1.1
prunus_persica	Prupe.8G168300_v2.0.a1
pyrus_communis	pycom05g11860
rosa_chinensis	RchiOBHm_Chr6g0255801 RchiOBHm_Chr6g0278781 RchiOBHm_Chr6g0278801
rosa_laevigata	RLG00000013193
rosa_multiflora	Rmu_sc0004380.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353520 Rroxscaffold_7G00189630 Rroxscaffold_7G00189900
rosa_rugosa	Rorug06G0119000
rosa_samantha	Rh5BG115500 Rh6AG227700 Rh6BG233300 Rh6CG235800 Rh6DG227000
rosa_wichuraiana	Rw6G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	3 cut(s)	84, 120, 130
AclWI	GGATC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	3 cut(s)	209, 233, 238
AluI	AGCT	3 cut(s)	209, 233, 238
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	330
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspA2I	CCTAGG	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	49, 307, 370
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	3 cut(s)	49, 307, 370
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	8
BccI	CCATC	2 cut(s)	166, 284
BclI	TGATCA	2 cut(s)	195, 240
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	3 cut(s)	59, 116, 382
BglII	AGATCT	1 cut(s)	312
BlnI	CCTAGG	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	3 cut(s)	49, 307, 370
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	49, 307, 370
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse21I	CCTNAGG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	4 cut(s)	22, 225, 300, 343
BseYI	CCCAGC	2 cut(s)	41, 209
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	289
Bsp143I	GATC	7 cut(s)	3, 195, 240, 259, 312, 322, 360
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	3 cut(s)	84, 120, 130
BspCNI	CTCAG	4 cut(s)	21, 226, 299, 342
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	7 cut(s)	3, 195, 240, 259, 312, 322, 360
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	4 cut(s)	8, 234, 286, 329
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	7 cut(s)	6, 198, 243, 262, 315, 325, 363
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	7 cut(s)	3, 195, 240, 259, 312, 322, 360
BstSCI	CCNGG	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	312, 322
BstYI	RGATCY	2 cut(s)	312, 322
Bsu36I	CCTNAGG	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	49, 307, 370
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	31, 46, 267
CviJI	RGCY	5 cut(s)	71, 185, 209, 233, 238
CviKI_1	RGCY	5 cut(s)	71, 185, 209, 233, 238
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	4 cut(s)	8, 234, 286, 329
DpnI	GATC	7 cut(s)	5, 197, 242, 261, 314, 324, 362
DpnII	GATC	7 cut(s)	3, 195, 240, 259, 312, 322, 360
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	49, 307, 370
Eco81I	CCTNAGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	34, 49, 270
FaiI	YATR	8 cut(s)	32, 47, 268, 279, 320, 337, 339, 377
FatI	CATG	3 cut(s)	30, 45, 266
FbaI	TGATCA	2 cut(s)	195, 240
FblI	GTMKAC	1 cut(s)	36
FokI	GGATG	1 cut(s)	188
FspBI	CTAG	3 cut(s)	59, 116, 382
GsaI	CCCAGC	2 cut(s)	45, 213
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	3 cut(s)	34, 49, 270
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	37, 370
Hpy188I	TCNGA	5 cut(s)	20, 165, 289, 297, 332
Hpy188III	TCNNGA	2 cut(s)	10, 310
Hpy8I	GTNNAC	2 cut(s)	37, 370
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	2 cut(s)	138, 159
HpyCH4V	TGCA	1 cut(s)	277
HpyF3I	CTNAG	4 cut(s)	8, 234, 286, 329
HpySE526I	ACGT	2 cut(s)	138, 159
Hsp92II	CATG	3 cut(s)	34, 49, 270
Ksp22I	TGATCA	2 cut(s)	195, 240
Kzo9I	GATC	7 cut(s)	3, 195, 240, 259, 312, 322, 360
LpnPI	CCDG	6 cut(s)	55, 65, 119, 135, 195, 323
MaeI	CTAG	3 cut(s)	59, 116, 382
MaeII	ACGT	2 cut(s)	138, 159
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	7 cut(s)	5, 197, 242, 261, 314, 324, 362
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	7 cut(s)	3, 195, 240, 259, 312, 322, 360
MboII	GAAGA	1 cut(s)	312
MflI	RGATCY	2 cut(s)	312, 322
MluCI	AATT	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	3 cut(s)	14, 17, 264
MseI	TTAA	1 cut(s)	216
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	53
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	7 cut(s)	3, 195, 240, 259, 312, 322, 360
NlaIII	CATG	3 cut(s)	34, 49, 270
NlaIV	GGNNCC	1 cut(s)	308
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	13
PspFI	CCCAGC	2 cut(s)	41, 209
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	3 cut(s)	49, 307, 370
PsuI	RGATCY	2 cut(s)	312, 322
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	7 cut(s)	3, 195, 240, 259, 312, 322, 360
Sau96I	GGNCC	3 cut(s)	49, 307, 370
ScrFI	CCNGG	1 cut(s)	53
SinI	GGWCC	3 cut(s)	49, 307, 370
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	3 cut(s)	84, 120, 130
SspMI	CTAG	3 cut(s)	59, 116, 382
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	2 cut(s)	141, 162
TaqI	TCGA	2 cut(s)	36, 156
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	255
VpaK11BI	GGWCC	3 cut(s)	49, 307, 370
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	3 cut(s)	59, 116, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.