pycom05g11860

Flavin containing amine oxidoreductase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
15409391 .. 15413150
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11860.11

Sequence Viewer

Length: 1623 bp
ATGTCGTTGGCTGCCTGTTGGAGGCTGACTCTGACATGCCCGCCACCGACCTCCTCACGGACTTCACCCTGCTTCTCTCCCAGAAGCCGAAGTGGGTTCCGTTGCAGAGCTTCTTCTGGGAAAGCCCACGCTGCAATTGGGGGCCCAAACGACAAGGAAAAGAAGAAGGTTGTCGTTGTTGGCTCTGGCTGGGCTGGCCTCGGCGCTGCTCACCACCTCTGCAACCAGGGTTTTGATGTTACTGTTATCGAACGAGGTAGTGACTTCGGCGTACTTGATGAAGTTGGTATCCGCGGTTATTGGTATCCTTACCGGAATATTTTTAGCCTTGTTGATGAGCTGGGTATCAAACCCTTTACGAACTGGACAAAGTTTGCACAATATTCAGCAGAAGGGTTGGAGGTTGAGTTTCCGGTATTTCAGGACCTTCCTCAATTGCCAGCACCATTTGGAACCTTATACTATACACAGTTTGCTCAGCTGCCATTGGTTGATAGATTAACTTCACTTCCCTTAACAGCTGCAGTGATCGATTTTGACAACACAGATACAGCCTGGAGAAAATATGATGCAATTACTGCAAGGGAGCTTTTTAAGCAGTTTGGATGTTCGGAAAGCCTTTATCGGAATGTCTTATCACCATTGCTTCAAGTGGGTCTTTCAGCACCAGCTGAACAAAGTAGTGCTGCCGCAACTCTTGGTTTACTATCCTGCATCTTTGCTCACCAGAAAGATTTTGATCTTGTTTGGTGTCGTGGAACAAGTAGAGAAAAGATTTTCAAGCCGTGGATGGAGTCTTTGATGAATAAAGGCTGCAAATTTGAGAAGGATACACAATTAACAGACTTTGTGCTTAATGAGGAAACTGGTTCTATTTCAGAAGTAGTTTGCGATGGAGAACTTTATAATGCTGATGCAGTTGTCTTGGCTGTTGGAATATCCACACTCCAAAAAATTATTGAAAACAGTGCAGTGTTGTGTACAAGGGAGGAGTTTCTTAAAGTCTTGAACTTAGCTAGCATTGATGTACTCTCCGTTAAGCTTTGGCTTGATAGGAAGGTTAACATTCCAAATGCATGTAATGCATGCTCCGGATTTGACAATTCATTTGGTTGGACTTTCTTTGATTTGAATGCAATCCATGACGATCATAAAGATAGTTCGGTAACAGTGTTACAAGCTGATTTTTATCATGCCAACGAGTTGTTGCCACTGAAAGATGAGCAAATAGTCTCTCGAGCAGTATCCTACCTGTCAAAGTACATTAAAGACTTCAAGAATGTTACTGTGACAAACAAGAAGATTGGCAGATTTCCGAAGTCATTAACTCACGTCTTTCCCGGTTCATATAAGGACATGATGCGTGGGGCTACATCTTTCCCGAACTTGTTCATGGCCGGAGACTGGATTATAACCCGACATGGTTCATGGTCACAGGAGAAATCTTACGTGACAGGACTTGAAGCTGCAAATCGCGCAGTAGACTATCTCGAAGAAGGAAGATTTGCGAAAATAATACCCGTAGAGGAAGATGAACCGCACATTCAAGCGCTTCGCAGCCTAAACAGAAGCTTTAAGGAGATCACAGCACAGCTTCCGTTGTCCAGTTACTTCCTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

541

Amino Acids

60.3

Weight (kDa)

6.11

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 906, 1412
AccI GTMKAC 1 cut(s) 1482
AccII CGCG 2 cut(s) 294, 1476
AccIII TCCGGA 1 cut(s) 1091
AciI CCGC 5 cut(s) 41, 292, 294, 690, 1538
AcoI YGGCCR 1 cut(s) 1395
AcsI RAATTY 1 cut(s) 818
AfaI GTAC 4 cut(s) 273, 982, 1029, 1262
AfeI AGCGCT 1 cut(s) 1551
AfiI CCNNNNNNNGG 3 cut(s) 21, 57, 1404
AgsI TTSAA 8 cut(s) 650, 781, 962, 1009, 1132, 1276, 1463, 1547
AjiI CACGTC 1 cut(s) 1333
AjnI CCWGG 2 cut(s) 225, 554
Alw26I GTCTC 2 cut(s) 1237, 1395
Ama87I CYCGRG 1 cut(s) 1236
Aor13HI TCCGGA 1 cut(s) 1091
Aor51HI AGCGCT 1 cut(s) 1551
AoxI GGCC 3 cut(s) 142, 196, 1395
ApaI GGGCCC 1 cut(s) 146
ApeKI GCWGC 9 cut(s) 11, 131, 206, 481, 521, 686, 813, 1466, 1557
ApoI RAATTY 1 cut(s) 818
ArsI GACNNNNNNTTYG 2 cut(s) 1091, 1123
Asp700I GAANNNNTTC 1 cut(s) 1388
AspLEI GCGC 3 cut(s) 206, 1478, 1552
AspS9I GGNCC 3 cut(s) 142, 143, 424
AsuC2I CCSGG 1 cut(s) 1341
AsuHPI GGTGA 4 cut(s) 57, 203, 630, 716
AsuNHI GCTAGC 1 cut(s) 1016
AvaI CYCGRG 1 cut(s) 1236
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 146
BbvI GCAGC 8 cut(s) 118, 193, 468, 508, 673, 800, 1453, 1569
BccI CCATC 2 cut(s) 784, 887
BceAI ACGGC 1 cut(s) 769
BciT130I CCWGG 2 cut(s) 227, 556
BciVI GTATCC 4 cut(s) 299, 315, 823, 1255
BcnI CCSGG 1 cut(s) 1341
BcoDI GTCTC 2 cut(s) 1237, 1395
BfaI CTAG 1 cut(s) 1017
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 2 cut(s) 207, 1553
BfuI GTATCC 4 cut(s) 299, 315, 823, 1255
BlpI GCTNAGC 1 cut(s) 477
Bme1390I CCNGG 3 cut(s) 227, 556, 1341
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 1236
BmgBI CACGTC 1 cut(s) 1333
BmgT120I GGNCC 3 cut(s) 142, 143, 424
BmiI GGNNCC 4 cut(s) 98, 143, 144, 454
BmrFI CCNGG 3 cut(s) 227, 556, 1341
BmsI GCATC 4 cut(s) 559, 723, 904, 1350
BmtI GCTAGC 1 cut(s) 1020
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpmI CTGGAG 1 cut(s) 577
Bpu1102I GCTNAGC 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 1341
Bsa29I ATCGAT 1 cut(s) 531
BsaAI YACGTR 1 cut(s) 1450
BsaBI GATNNNNATC 2 cut(s) 738, 1188
BsaJI CCNNGG 4 cut(s) 199, 226, 292, 785
BsaWI WCCGGW 3 cut(s) 312, 412, 1091
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 57, 1404
Bse1I ACTGG 4 cut(s) 368, 871, 1409, 1605
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 2 cut(s) 738, 1188
BseAI TCCGGA 1 cut(s) 1091
BseBI CCWGG 2 cut(s) 227, 556
BseCI ATCGAT 1 cut(s) 531
BseDI CCNNGG 4 cut(s) 199, 226, 292, 785
BseGI GGATG 2 cut(s) 611, 795
BseJI GATNNNNATC 2 cut(s) 738, 1188
BseLI CCNNNNNNNGG 3 cut(s) 21, 57, 1404
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 4 cut(s) 368, 871, 1409, 1605
BseRI GAGGAG 2 cut(s) 43, 1004
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 8 cut(s) 118, 193, 468, 508, 673, 800, 1453, 1569
BseYI CCCAGC 2 cut(s) 189, 340
BsgI GTGCAG 1 cut(s) 990
Bsh1236I CGCG 2 cut(s) 294, 1476
BshFI GGCC 3 cut(s) 144, 198, 1397
BshVI ATCGAT 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 1236
BsiSI CCGG 5 cut(s) 313, 413, 1092, 1341, 1398
BslI CCNNNNNNNGG 3 cut(s) 21, 57, 1404
BsmAI GTCTC 2 cut(s) 1237, 1395
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 3 cut(s) 144, 198, 1397
BsoBI CYCGRG 1 cut(s) 1236
Bsp120I GGGCCC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 1091
Bsp1407I TGTACA 1 cut(s) 980
Bsp143I GATC 4 cut(s) 528, 739, 1147, 1581
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 5 cut(s) 41, 292, 294, 690, 1538
BspANI GGCC 3 cut(s) 144, 198, 1397
BspCNI CTCAG 1 cut(s) 490
BspDI ATCGAT 1 cut(s) 531
BspEI TCCGGA 1 cut(s) 1091
BspFNI CGCG 2 cut(s) 294, 1476
BspLI GGNNCC 4 cut(s) 98, 143, 144, 454
BspMAI CTGCAG 1 cut(s) 526
BspOI GCTAGC 1 cut(s) 1020
BsrDI GCAATG 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 980
BsrI ACTGG 4 cut(s) 368, 871, 1409, 1605
BssECI CCNNGG 4 cut(s) 199, 226, 292, 785
BssMI GATC 4 cut(s) 528, 739, 1147, 1581
Bst2UI CCWGG 2 cut(s) 227, 556
Bst4CI ACNGT 5 cut(s) 244, 471, 968, 1171, 1288
BstAPI GCANNNNNTGC 2 cut(s) 578, 1082
BstAUI TGTACA 1 cut(s) 980
BstBAI YACGTR 1 cut(s) 1450
BstC8I GCNNGC 5 cut(s) 41, 196, 441, 1018, 1087
BstDEI CTNAG 2 cut(s) 477, 1012
BstDSI CCRYGG 2 cut(s) 292, 785
BstENI CCTNNNNNAGG 1 cut(s) 19
BstF5I GGATG 2 cut(s) 611, 795
BstFNI CGCG 2 cut(s) 294, 1476
BstH2I RGCGCY 2 cut(s) 207, 1553
BstHHI GCGC 3 cut(s) 206, 1478, 1552
BstKTI GATC 4 cut(s) 531, 742, 1150, 1584
BstMAI GTCTC 2 cut(s) 1237, 1395
BstMBI GATC 4 cut(s) 528, 739, 1147, 1581
BstMWI GCNNNNNNNGC 6 cut(s) 131, 195, 578, 595, 1082, 1475
BstNI CCWGG 2 cut(s) 227, 556
BstNSI RCATGY 3 cut(s) 39, 1080, 1089
BstSCI CCNGG 3 cut(s) 225, 554, 1339
BstSFI CTRYAG 1 cut(s) 522
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 2 cut(s) 294, 1476
BstV1I GCAGC 8 cut(s) 118, 193, 468, 508, 673, 800, 1453, 1569
Bsu15I ATCGAT 1 cut(s) 531
BsuI GTATCC 4 cut(s) 299, 315, 823, 1255
BsuRI GGCC 3 cut(s) 144, 198, 1397
BsuTUI ATCGAT 1 cut(s) 531
BtgI CCRYGG 2 cut(s) 292, 785
BtgZI GCGATG 1 cut(s) 906
BtrI CACGTC 1 cut(s) 1333
BtsCI GGATG 2 cut(s) 611, 795
BtsI GCAGTG 2 cut(s) 531, 978
BtsIMutI CAGTG 5 cut(s) 531, 973, 978, 1176, 1211
Cac8I GCNNGC 5 cut(s) 41, 196, 441, 1018, 1087
CfoI GCGC 3 cut(s) 206, 1478, 1552
Cfr13I GGNCC 3 cut(s) 142, 143, 424
Cfr42I CCGCGG 1 cut(s) 295
ClaI ATCGAT 1 cut(s) 531
Csp6I GTAC 4 cut(s) 272, 981, 1028, 1261
CviAII CATG 9 cut(s) 36, 1077, 1086, 1142, 1193, 1357, 1393, 1421, 1428
CviQI GTAC 4 cut(s) 272, 981, 1028, 1261
DdeI CTNAG 2 cut(s) 477, 1012
DpnI GATC 4 cut(s) 530, 741, 1149, 1583
DpnII GATC 4 cut(s) 528, 739, 1147, 1581
EaeI YGGCCR 1 cut(s) 1395
Eco24I GRGCYC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 424
Eco47III AGCGCT 1 cut(s) 1551
Eco88I CYCGRG 1 cut(s) 1236
EcoNI CCTNNNNNAGG 1 cut(s) 19
EcoO109I RGGNCCY 2 cut(s) 142, 424
EcoRII CCWGG 2 cut(s) 225, 554
EcoT22I ATGCAT 2 cut(s) 1078, 1087
EcoT38I GRGCYC 1 cut(s) 146
FaeI CATG 9 cut(s) 39, 1080, 1089, 1145, 1196, 1360, 1396, 1424, 1431
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 9 cut(s) 35, 1076, 1085, 1141, 1192, 1356, 1392, 1420, 1427
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 1482
FokI GGATG 2 cut(s) 618, 802
FriOI GRGCYC 1 cut(s) 146
FspBI CTAG 1 cut(s) 1017
GlaI GCGC 3 cut(s) 205, 1477, 1551
GsaI CCCAGC 2 cut(s) 193, 344
GsuI CTGGAG 1 cut(s) 577
HaeII RGCGCY 2 cut(s) 207, 1553
HaeIII GGCC 3 cut(s) 144, 198, 1397
HapII CCGG 5 cut(s) 313, 413, 1092, 1341, 1398
HhaI GCGC 3 cut(s) 206, 1478, 1552
Hin1II CATG 9 cut(s) 39, 1080, 1089, 1145, 1196, 1360, 1396, 1424, 1431
Hin6I GCGC 3 cut(s) 204, 1476, 1550
HinP1I GCGC 3 cut(s) 204, 1476, 1550
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 2 cut(s) 1040, 1570
HinfI GANTC 2 cut(s) 28, 794
HpaI GTTAAC 1 cut(s) 1063
HpaII CCGG 5 cut(s) 313, 413, 1092, 1341, 1398
HphI GGTGA 4 cut(s) 57, 203, 630, 716
Hpy166II GTNNAC 4 cut(s) 704, 981, 1063, 1483
Hpy188I TCNGA 5 cut(s) 33, 613, 627, 880, 1317
Hpy188III TCNNGA 7 cut(s) 422, 1006, 1092, 1236, 1276, 1381, 1490
Hpy8I GTNNAC 4 cut(s) 704, 981, 1063, 1483
HpyAV CCTTC 6 cut(s) 160, 386, 437, 820, 1051, 1490
HpyCH4III ACNGT 5 cut(s) 244, 471, 968, 1171, 1288
HpyCH4IV ACGT 2 cut(s) 1332, 1449
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 195, 578, 595, 1082, 1475
HpyF3I CTNAG 2 cut(s) 477, 1012
HpySE526I ACGT 2 cut(s) 1332, 1449
Hsp92II CATG 9 cut(s) 39, 1080, 1089, 1145, 1196, 1360, 1396, 1424, 1431
HspAI GCGC 3 cut(s) 204, 1476, 1550
Kpn2I TCCGGA 1 cut(s) 1091
KspAI GTTAAC 1 cut(s) 1063
KspI CCGCGG 1 cut(s) 295
Kzo9I GATC 4 cut(s) 528, 739, 1147, 1581
LmnI GCTCC 2 cut(s) 586, 1094
Lsp1109I GCAGC 8 cut(s) 118, 193, 468, 508, 673, 800, 1453, 1569
LweI GCATC 4 cut(s) 559, 723, 904, 1350
MaeI CTAG 1 cut(s) 1017
MaeII ACGT 2 cut(s) 1332, 1449
MaeIII GTNAC 9 cut(s) 238, 260, 1165, 1173, 1282, 1288, 1431, 1450, 1607
MalI GATC 4 cut(s) 530, 741, 1149, 1583
MboI GATC 4 cut(s) 528, 739, 1147, 1581
MboII GAAGA 6 cut(s) 105, 175, 1312, 1505, 1512, 1541
MfeI CAATTG 2 cut(s) 135, 434
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 7 cut(s) 135, 434, 573, 818, 836, 954, 1102
MlyI GAGTC 2 cut(s) 22, 803
MmeI TCCRAC 3 cut(s) 378, 913, 1094
Mph1103I ATGCAT 2 cut(s) 1078, 1087
MroI TCCGGA 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 1388
MspA1I CMGCKG 4 cut(s) 294, 481, 521, 671
MspI CCGG 5 cut(s) 313, 413, 1092, 1341, 1398
MspR9I CCNGG 3 cut(s) 227, 556, 1341
MunI CAATTG 2 cut(s) 135, 434
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 2 cut(s) 227, 556
MvnI CGCG 2 cut(s) 294, 1476
MwoI GCNNNNNNNGC 6 cut(s) 131, 195, 578, 595, 1082, 1475
NciI CCSGG 1 cut(s) 1341
NdeII GATC 4 cut(s) 528, 739, 1147, 1581
NheI GCTAGC 1 cut(s) 1016
NlaIII CATG 9 cut(s) 39, 1080, 1089, 1145, 1196, 1360, 1396, 1424, 1431
NlaIV GGNNCC 4 cut(s) 98, 143, 144, 454
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 4 cut(s) 260, 1288, 1431, 1450
NsiI ATGCAT 2 cut(s) 1078, 1087
NspI RCATGY 3 cut(s) 39, 1080, 1089
PaeI GCATGC 1 cut(s) 1089
PaeR7I CTCGAG 1 cut(s) 1236
PctI GAATGC 1 cut(s) 1138
PdmI GAANNNNTTC 1 cut(s) 1388
PleI GAGTC 2 cut(s) 22, 802
PpsI GAGTC 2 cut(s) 22, 802
Ppu21I YACGTR 1 cut(s) 1450
PpuMI RGGWCCY 1 cut(s) 424
PsiI TTATAA 2 cut(s) 906, 1412
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 2 cut(s) 225, 554
PspFI CCCAGC 2 cut(s) 189, 340
PspGI CCWGG 2 cut(s) 225, 554
PspN4I GGNNCC 4 cut(s) 98, 143, 144, 454
PspOMI GGGCCC 1 cut(s) 142
PspPI GGNCC 3 cut(s) 142, 143, 424
PspPPI RGGWCCY 1 cut(s) 424
PstI CTGCAG 1 cut(s) 526
PvuII CAGCTG 3 cut(s) 481, 521, 671
RsaI GTAC 4 cut(s) 273, 982, 1029, 1262
RsaNI GTAC 4 cut(s) 272, 981, 1028, 1261
SacII CCGCGG 1 cut(s) 295
Sau3AI GATC 4 cut(s) 528, 739, 1147, 1581
Sau96I GGNCC 3 cut(s) 142, 143, 424
SchI GAGTC 2 cut(s) 22, 803
ScrFI CCNGG 3 cut(s) 227, 556, 1341
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 4 cut(s) 559, 723, 904, 1350
SfcI CTRYAG 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 1236
Sfr303I CCGCGG 1 cut(s) 295
SgrBI CCGCGG 1 cut(s) 295
SinI GGWCC 1 cut(s) 424
SlaI CTCGAG 1 cut(s) 1236
SmlI CTYRAG 1 cut(s) 1236
SmoI CTYRAG 1 cut(s) 1236
SphI GCATGC 1 cut(s) 1089
Sse9I AATT 7 cut(s) 135, 434, 573, 818, 836, 954, 1102
SsiI CCGC 5 cut(s) 41, 292, 294, 690, 1538
SspI AATATT 2 cut(s) 319, 383
SspMI CTAG 1 cut(s) 1017
StyD4I CCNGG 3 cut(s) 225, 554, 1339
TaaI ACNGT 5 cut(s) 244, 471, 968, 1171, 1288
TaiI ACGT 2 cut(s) 1335, 1452
TaqI TCGA 4 cut(s) 249, 531, 1237, 1491
TasI AATT 7 cut(s) 135, 434, 573, 818, 836, 954, 1102
TatI WGTACW 3 cut(s) 980, 1027, 1260
TauI GCSGC 1 cut(s) 692
TscAI CASTG 5 cut(s) 531, 973, 978, 1176, 1218
TseFI GTSAC 4 cut(s) 260, 1288, 1431, 1450
TseI GCWGC 9 cut(s) 11, 131, 206, 481, 521, 686, 813, 1466, 1557
Tsp45I GTSAC 4 cut(s) 260, 1288, 1431, 1450
TspDTI ATGAA 7 cut(s) 294, 818, 1095, 1335, 1381, 1416, 1548
TspGWI ACGGA 4 cut(s) 73, 89, 1024, 1587
TspRI CASTG 5 cut(s) 531, 973, 978, 1176, 1218
VpaK11BI GGWCC 1 cut(s) 424
XagI CCTNNNNNAGG 1 cut(s) 19
XapI RAATTY 1 cut(s) 818
XceI RCATGY 3 cut(s) 39, 1080, 1089
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 1236
XmiI GTMKAC 1 cut(s) 1482
XmnI GAANNNNTTC 1 cut(s) 1388
XspI CTAG 1 cut(s) 1017
Zsp2I ATGCAT 2 cut(s) 1078, 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.