Rh5BG115500

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012576
Physical Location & Seq
Forward (+)
10808617 .. 10811816
3200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG115500.1

Sequence Viewer

Length: 1333 bp
ATGTCGTTGGCTTCTTGTTGGAGATTCCCTCTCACAGTCCTCCCAGTTCCAACGACACCGCGTTTCACTCCCAGGTACCCAACTGGGTCGACTCATCGTAGCAGAGCTTCTGCACAACTAGACCTTACAGTCCCTGATGATAGACCAAACGACCACAAGAAAGTCAAGAAGGTTGTCGTCATTGGCTCTGGCTGGGCTGGCCTTGGCGCTGCCCACCACCTCTGCAACCAGGGCTTTGATCTTAGTGTACTTGAAAATGATAGTCTTGATGATGTGGGTATCCATGGTTATTGGTCTCCCTACAGGAATATATTCAGCCTTGTTGATGAGCTGGAGATTAAACCCTTCACTAACTGGACTAAGTTTGCGCAATATTCAGCTGAGGGATTGGAGATTGAATTTCCGGTATTTCGAGACCTTCCTCAGTTGCCAACTCCATTAGGAACCTTGTACTATTCACAGTTTGTTGAGTTGCCGTTGGTTGATAGATTAACTTCACTTCCTTTAACGGCTGCAGTAATCGACTTTGACAATACTGATACTGCCTGGAGAAAATATGACTCAATTACTGCAAGGGAGCTCTTTAAGCAGTTTGGCTGCTCACAAAAGCTTTATCAGAAAGTCCTAGCACCATTGCTTCAAGTGGGTCTGTTTGCACCAGTAGAACAATGTAGTGCTGCTGCTACTCTGGGCCTGCTATCCTACATCCTTGCTCACCAGAAAGATTTTGATCTAGTGTTGTGTCGTGGAACAACTAGGGAAAAGATCTTTAAGCCGTGGATGGAGTCTATGACAACCAAAGGTTGCAAGTTTGAGAAAGGTCTAAGTGTAACAGACCTTTTGCTTAATGAGGAAACTGGCTGTATTTCTGAAGTAGTTTGTGGCAAAGAAATGTATAGTGCTGACGCAGTTGTCCTAGCTGTTGGAATCTCCACGCTTCAGAAACTTATTGAAAATAGTGCAGTGTTGTGTACGAGGGAGGAATTTGTCAAGGTCTCGAACCTAGCTACCATTGATGTACTCTCCGTTAAGCTCTGGCTCGATAGGAAGGTGACCATTCCAAATGCAAGCAATGCTTGCTCAGGTTTTGATGATTCGTTCGGGTGGTCTTTCTTTGATTTGAATGTAATTCATGATGACCACAAAGATAGTACAACAACAGTGCTACAAGCAGATTTTTATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTGCCAAGGTGACATCTTACCTATCAAAGTGCATCAAGGACTTCGAGAATGCTACTGTGATAAATAAGGAGATTGGAAGATTTCCAAAATCCCTGACTCATTTCTTTCCAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

444

Amino Acids

49.71

Weight (kDa)

5.78

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amino_oxidase PF01593 95 - 422 4.7e-09 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 911
Acc16I TGCGCA 1 cut(s) 369
Acc65I GGTACC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 89
AccII CGCG 1 cut(s) 61
AciI CCGC 1 cut(s) 59
AcsI RAATTY 2 cut(s) 398, 983
AcuI CTGAAG 2 cut(s) 891, 923
AfaI GTAC 7 cut(s) 77, 249, 452, 973, 1020, 1153, 1203
AgsI TTSAA 5 cut(s) 254, 398, 641, 953, 1123
AjnI CCWGG 3 cut(s) 71, 228, 545
AluBI AGCT 8 cut(s) 107, 331, 380, 580, 610, 920, 1007, 1033
AluI AGCT 8 cut(s) 107, 331, 380, 580, 610, 920, 1007, 1033
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 3 cut(s) 300, 408, 1000
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 2 cut(s) 199, 691
ApeKI GCWGC 5 cut(s) 209, 512, 597, 677, 680
ApoI RAATTY 2 cut(s) 398, 983
Asp700I GAANNNNTTC 1 cut(s) 311
Asp718I GGTACC 1 cut(s) 75
AspLEI GCGC 2 cut(s) 209, 370
AspS9I GGNCC 1 cut(s) 691
AsuHPI GGTGA 3 cut(s) 707, 1063, 1243
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 582
BarI GAAGNNNNNNTAC 2 cut(s) 91, 123
Bbv12I GWGCWC 1 cut(s) 582
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 5 cut(s) 196, 499, 584, 664, 667
BccI CCATC 1 cut(s) 775
BceAI ACGGC 3 cut(s) 460, 525, 760
BciT130I CCWGG 3 cut(s) 73, 230, 547
BciVI GTATCC 1 cut(s) 290
BcoDI GTCTC 3 cut(s) 300, 408, 1000
BfaI CTAG 6 cut(s) 119, 626, 734, 756, 917, 1004
BfmI CTRYAG 2 cut(s) 301, 513
BfoI RGCGCY 1 cut(s) 210
BfuI GTATCC 1 cut(s) 290
BglII AGATCT 1 cut(s) 765
BisI GCNGC 5 cut(s) 210, 513, 598, 678, 681
BlsI GCNGC 5 cut(s) 211, 514, 599, 679, 682
BmcAI AGTACT 1 cut(s) 1203
Bme1390I CCNGG 3 cut(s) 73, 230, 547
BmgT120I GGNCC 1 cut(s) 691
BmiI GGNNCC 2 cut(s) 77, 445
BmrFI CCNGG 3 cut(s) 73, 230, 547
BmrI ACTGGG 2 cut(s) 38, 93
BmsI GCATC 1 cut(s) 1263
BmuI ACTGGG 2 cut(s) 38, 93
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpmI CTGGAG 2 cut(s) 353, 568
Bpu10I CCTNAGC 2 cut(s) 381, 1081
BsaBI GATNNNNATC 2 cut(s) 729, 1179
BsaI GGTCTC 3 cut(s) 300, 408, 1000
BsaJI CCNNGG 6 cut(s) 71, 202, 229, 283, 776, 1227
BsaWI WCCGGW 1 cut(s) 403
Bse1I ACTGG 5 cut(s) 44, 88, 359, 659, 862
Bse3DI GCAATG 2 cut(s) 632, 1078
Bse8I GATNNNNATC 2 cut(s) 729, 1179
BseBI CCWGG 3 cut(s) 73, 230, 547
BseDI CCNNGG 6 cut(s) 71, 202, 229, 283, 776, 1227
BseGI GGATG 2 cut(s) 705, 786
BseJI GATNNNNATC 2 cut(s) 729, 1179
BseMI GCAATG 2 cut(s) 632, 1078
BseMII CTCAG 3 cut(s) 372, 437, 1095
BseNI ACTGG 5 cut(s) 44, 88, 359, 659, 862
BseXI GCAGC 5 cut(s) 196, 499, 584, 664, 667
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 2 cut(s) 96, 981
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 201, 693
BshNI GGYRCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 116
BsmAI GTCTC 3 cut(s) 300, 408, 1000
BsmFI GGGAC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 1276
BsnI GGCC 2 cut(s) 201, 693
Bso31I GGTCTC 3 cut(s) 300, 408, 1000
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 3 cut(s) 238, 730, 765
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 1 cut(s) 59
BspANI GGCC 2 cut(s) 201, 693
BspCNI CTCAG 3 cut(s) 373, 436, 1094
BspFNI CGCG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 1132
BspLI GGNNCC 2 cut(s) 77, 445
BspMAI CTGCAG 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 75
BspTNI GGTCTC 3 cut(s) 300, 408, 1000
BsrDI GCAATG 2 cut(s) 632, 1078
BsrI ACTGG 5 cut(s) 44, 88, 359, 659, 862
BssECI CCNNGG 6 cut(s) 71, 202, 229, 283, 776, 1227
BssMI GATC 3 cut(s) 238, 730, 765
BssT1I CCWWGG 3 cut(s) 202, 283, 1227
Bst2UI CCWGG 3 cut(s) 73, 230, 547
Bst4CI ACNGT 5 cut(s) 37, 130, 462, 1162, 1279
BstAPI GCANNNNNTGC 2 cut(s) 1073, 1077
BstC8I GCNNGC 4 cut(s) 199, 695, 1069, 1078
BstDEI CTNAG 6 cut(s) 242, 360, 381, 423, 824, 1081
BstDSI CCRYGG 2 cut(s) 283, 776
BstEII GGTNACC 1 cut(s) 1051
BstF5I GGATG 2 cut(s) 705, 786
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 370
BstKTI GATC 3 cut(s) 241, 733, 768
BstMAI GTCTC 3 cut(s) 300, 408, 1000
BstMBI GATC 3 cut(s) 238, 730, 765
BstMWI GCNNNNNNNGC 5 cut(s) 198, 231, 586, 1073, 1077
BstNI CCWGG 3 cut(s) 73, 230, 547
BstPI GGTNACC 1 cut(s) 1051
BstSCI CCNGG 3 cut(s) 71, 228, 545
BstSFI CTRYAG 2 cut(s) 301, 513
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 5 cut(s) 196, 499, 584, 664, 667
BstX2I RGATCY 1 cut(s) 765
BstYI RGATCY 1 cut(s) 765
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 2 cut(s) 201, 693
BtgI CCRYGG 2 cut(s) 283, 776
BtsCI GGATG 2 cut(s) 705, 786
BtsI GCAGTG 1 cut(s) 969
BtsIMutI CAGTG 2 cut(s) 969, 1167
Cac8I GCNNGC 4 cut(s) 199, 695, 1069, 1078
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 1132
CfoI GCGC 2 cut(s) 209, 370
Cfr13I GGNCC 1 cut(s) 691
CseI GACGC 1 cut(s) 914
Csp6I GTAC 7 cut(s) 76, 248, 451, 972, 1019, 1152, 1202
CviAII CATG 2 cut(s) 284, 1133
CviQI GTAC 7 cut(s) 76, 248, 451, 972, 1019, 1152, 1202
DdeI CTNAG 6 cut(s) 242, 360, 381, 423, 824, 1081
DpnI GATC 3 cut(s) 240, 732, 767
DpnII GATC 3 cut(s) 238, 730, 765
DrdI GACNNNNNNGTC 2 cut(s) 128, 911
DseDI GACNNNNNNGTC 2 cut(s) 128, 911
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 3 cut(s) 202, 283, 1227
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 3 cut(s) 300, 408, 1000
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 2 cut(s) 891, 923
Eco91I GGTNACC 1 cut(s) 1051
EcoICRI GAGCTC 1 cut(s) 580
EcoO65I GGTNACC 1 cut(s) 1051
EcoRII CCWGG 3 cut(s) 71, 228, 545
EcoT14I CCWWGG 3 cut(s) 202, 283, 1227
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 3 cut(s) 202, 283, 1227
FaeI CATG 2 cut(s) 287, 1136
FaiI YATR 6 cut(s) 285, 311, 558, 791, 897, 1134
FalI AAGNNNNNCTT 2 cut(s) 1060, 1092
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 283, 1132
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 5 cut(s) 210, 513, 598, 678, 681
FokI GGATG 2 cut(s) 692, 793
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 5 cut(s) 210, 513, 598, 678, 681
FspBI CTAG 6 cut(s) 119, 626, 734, 756, 917, 1004
FspI TGCGCA 1 cut(s) 369
GlaI GCGC 2 cut(s) 208, 369
GluI GCNGC 5 cut(s) 210, 513, 598, 678, 681
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 2 cut(s) 353, 568
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 2 cut(s) 201, 693
HapII CCGG 1 cut(s) 404
HgaI GACGC 1 cut(s) 914
HhaI GCGC 2 cut(s) 209, 370
Hin1II CATG 2 cut(s) 287, 1136
Hin6I GCGC 2 cut(s) 207, 368
HinP1I GCGC 2 cut(s) 207, 368
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 7 cut(s) 24, 91, 560, 785, 927, 1094, 1318
HpaII CCGG 1 cut(s) 404
HphI GGTGA 3 cut(s) 707, 1063, 1243
Hpy166II GTNNAC 3 cut(s) 90, 248, 972
Hpy188I TCNGA 3 cut(s) 618, 871, 942
Hpy188III TCNNGA 6 cut(s) 166, 266, 413, 997, 1133, 1267
Hpy8I GTNNAC 3 cut(s) 90, 248, 972
HpyAV CCTTC 4 cut(s) 163, 355, 428, 1042
HpyCH4III ACNGT 5 cut(s) 37, 130, 462, 1162, 1279
HpyCH4V TGCA 9 cut(s) 113, 225, 515, 572, 656, 807, 962, 1067, 1254
HpyF10VI GCNNNNNNNGC 5 cut(s) 198, 231, 586, 1073, 1077
HpyF3I CTNAG 6 cut(s) 242, 360, 381, 423, 824, 1081
Hsp92II CATG 2 cut(s) 287, 1136
HspAI GCGC 2 cut(s) 207, 368
KpnI GGTACC 1 cut(s) 79
Kzo9I GATC 3 cut(s) 238, 730, 765
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 5 cut(s) 196, 499, 584, 664, 667
LweI GCATC 1 cut(s) 1263
MaeI CTAG 6 cut(s) 119, 626, 734, 756, 917, 1004
MaeIII GTNAC 3 cut(s) 829, 1051, 1231
MalI GATC 3 cut(s) 240, 732, 767
MboI GATC 3 cut(s) 238, 730, 765
MboII GAAGA 1 cut(s) 1311
MflI RGATCY 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 4 cut(s) 398, 564, 983, 1128
MlyI GAGTC 4 cut(s) 85, 554, 794, 1312
MmeI TCCRAC 2 cut(s) 74, 904
MnlI CCTC 8 cut(s) 39, 50, 230, 376, 432, 844, 969, 973
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 7 cut(s) 339, 491, 506, 585, 771, 846, 1029
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 3 cut(s) 73, 230, 547
Mva1269I GAATGC 1 cut(s) 1276
MvaI CCWGG 3 cut(s) 73, 230, 547
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 5 cut(s) 198, 231, 586, 1073, 1077
NcoI CCATGG 1 cut(s) 283
NdeII GATC 3 cut(s) 238, 730, 765
NlaIII CATG 2 cut(s) 287, 1136
NlaIV GGNNCC 2 cut(s) 77, 445
NmuCI GTSAC 2 cut(s) 1051, 1231
NsbI TGCGCA 1 cut(s) 369
PagI TCATGA 1 cut(s) 1132
PctI GAATGC 1 cut(s) 1276
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 3 cut(s) 24, 927, 1094
PkrI GCNGC 5 cut(s) 211, 514, 599, 679, 682
PleI GAGTC 4 cut(s) 85, 554, 793, 1312
PpsI GAGTC 4 cut(s) 85, 554, 793, 1312
Psp124BI GAGCTC 1 cut(s) 582
Psp6I CCWGG 3 cut(s) 71, 228, 545
PspEI GGTNACC 1 cut(s) 1051
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 3 cut(s) 71, 228, 545
PspN4I GGNNCC 2 cut(s) 77, 445
PspPI GGNCC 1 cut(s) 691
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 765
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 7 cut(s) 77, 249, 452, 973, 1020, 1153, 1203
RsaNI GTAC 7 cut(s) 76, 248, 451, 972, 1019, 1152, 1202
SacI GAGCTC 1 cut(s) 582
SalI GTCGAC 1 cut(s) 88
SaqAI TTAA 7 cut(s) 339, 491, 506, 585, 771, 846, 1029
SatI GCNGC 5 cut(s) 210, 513, 598, 678, 681
Sau3AI GATC 3 cut(s) 238, 730, 765
Sau96I GGNCC 1 cut(s) 691
ScaI AGTACT 1 cut(s) 1203
SchI GAGTC 4 cut(s) 85, 554, 794, 1312
ScrFI CCNGG 3 cut(s) 73, 230, 547
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 1 cut(s) 1263
SfcI CTRYAG 2 cut(s) 301, 513
Sse9I AATT 4 cut(s) 398, 564, 983, 1128
SsiI CCGC 1 cut(s) 59
SspI AATATT 1 cut(s) 374
SspMI CTAG 6 cut(s) 119, 626, 734, 756, 917, 1004
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 3 cut(s) 71, 228, 545
StyI CCWWGG 3 cut(s) 202, 283, 1227
TaaI ACNGT 5 cut(s) 37, 130, 462, 1162, 1279
TaqI TCGA 6 cut(s) 89, 412, 522, 998, 1041, 1266
TasI AATT 4 cut(s) 398, 564, 983, 1128
TatI WGTACW 5 cut(s) 247, 450, 1018, 1151, 1201
TfiI GAWTC 3 cut(s) 24, 927, 1094
Tru1I TTAA 7 cut(s) 339, 491, 506, 585, 771, 846, 1029
Tru9I TTAA 7 cut(s) 339, 491, 506, 585, 771, 846, 1029
TscAI CASTG 2 cut(s) 969, 1167
TseFI GTSAC 2 cut(s) 1051, 1231
TseI GCWGC 5 cut(s) 209, 512, 597, 677, 680
Tsp45I GTSAC 2 cut(s) 1051, 1231
TspDTI ATGAA 1 cut(s) 1121
TspGWI ACGGA 1 cut(s) 1015
TspRI CASTG 2 cut(s) 969, 1167
XapI RAATTY 2 cut(s) 398, 983
XmiI GTMKAC 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 6 cut(s) 119, 626, 734, 756, 917, 1004
ZrmI AGTACT 1 cut(s) 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.