Rh6DG227000

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012576
Physical Location & Seq
Forward (+)
40632642 .. 40636964
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG227000.1

Sequence Viewer

Length: 1134 bp
ATGCACTTCCCAACTCATGTGTGCATTTTCTTTGCAGTAATCGACTTTGACAATACTGATACAGCCTGGAGAAAATATGACTCAATTACTGCAAGGGAGCTCTTTAAGCAGTTTGGCTGCTCAGAAAAGCTTTATCAGAAAGTCCTAGCACCATTGCTTCAAGTGGGTCTGTTTGCACCAGCAGAACAATGTAGTGCTGCTGCTACTCTGGGCTTGCTATCCTACATCCTTGCTCACCAGAAAGATTTTGATCTAGTACTGTGTCGTGGAACAACTAGGGAAAAGATCTTTCAGCCGTGGATGGAGTCTATGACAACCAAAGGTTGCAAGTTTGAGAAAGGTCCAAGTGTAACGGACCTTTTGCTTAATGAGGAAACTGGTTGTATTTCTGAAGTAGTTTGTGGCAAAGAAATGTATAGTGCTGATGCAGTTGTCCTAGCTGTTGGAATCTCCACGCTTCAGAAACTTATTGAAAATAGTGCAGTGTTGTGTACGAGGGAGGAATTTGTCAAGGTCTCGAACCTGGCTACCATCGATGTACTCTGCGTTAAGCTCTGGATTGATAGGAAGGTGAGCATTCCAAATGCAAGCAATGCTTGCTCAGGTTTTGATGATTCGTTCGGGTGGTCTTTCTTTGATTTGAATGTAATTCATGATGACCACAAAGATAGTACAGTAACAGTGGTACAAGCTGATTTTTATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTGCCAAGGTGACATCTTACCTGTCAAAGTGCATCAAGGACTTCGAGAATGCTACTGTGATAAATAAGGAGATTGGAAGATTTCCAAAATCCCTGGCTCATTTCTTTCCAGGTTCATACAAGTACATGATACGCGGGTCTACATCTTTCCCAAACTTGTTCATGGCTGGAGACTGGATTACAACCCGACATGGTTCATGGTCACAGGAGAAATCTTATGTCACGGGTCTTGAGGCTGCCAATCGTACAGTGGACTATCTTGAAGTAGGAAGCTTTGCTAAAATAATACCTGTTGAGGAGGACGAACCACACATTCAAGCACTTCGTAGCCTAAACAGAAGTTTTAATGACATCAAAGCCCAATTTCCGTTATCTAGTTATTTCCTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

377

Amino Acids

42.39

Weight (kDa)

5.68

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amino_oxidase PF01593 102 - 329 2.4e-14 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 881
AccII CGCG 1 cut(s) 876
AciI CCGC 1 cut(s) 876
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 2 cut(s) 411, 443
AfaI GTAC 8 cut(s) 258, 493, 540, 673, 687, 723, 866, 988
AgsI TTSAA 5 cut(s) 161, 473, 643, 1004, 1058
AjnI CCWGG 4 cut(s) 65, 522, 834, 850
AluBI AGCT 6 cut(s) 100, 130, 440, 553, 692, 1014
AluI AGCT 6 cut(s) 100, 130, 440, 553, 692, 1014
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 520, 906
ApeKI GCWGC 4 cut(s) 117, 197, 200, 977
ApoI RAATTY 1 cut(s) 503
AspS9I GGNCC 2 cut(s) 341, 355
AsuHPI GGTGA 3 cut(s) 227, 583, 763
AvaII GGWCC 2 cut(s) 341, 355
BaeI ACNNNNGTAYC 2 cut(s) 863, 896
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 4 cut(s) 104, 184, 187, 964
BccI CCATC 2 cut(s) 295, 539
BceAI ACGGC 1 cut(s) 280
BciT130I CCWGG 4 cut(s) 67, 524, 836, 852
BcoDI GTCTC 2 cut(s) 520, 906
BfaI CTAG 5 cut(s) 146, 254, 276, 437, 1116
BglII AGATCT 1 cut(s) 285
BisI GCNGC 4 cut(s) 118, 198, 201, 978
BlsI GCNGC 4 cut(s) 119, 199, 202, 979
BmcAI AGTACT 2 cut(s) 258, 723
Bme1390I CCNGG 4 cut(s) 67, 524, 836, 852
Bme18I GGWCC 2 cut(s) 341, 355
BmgT120I GGNCC 2 cut(s) 341, 355
BmrFI CCNGG 4 cut(s) 67, 524, 836, 852
BmsI GCATC 2 cut(s) 415, 783
BpmI CTGGAG 2 cut(s) 88, 930
Bpu10I CCTNAGC 1 cut(s) 601
BpuEI CTTGAG 1 cut(s) 992
Bsa29I ATCGAT 1 cut(s) 534
BsaBI GATNNNNATC 2 cut(s) 249, 699
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 3 cut(s) 296, 747, 834
Bse1I ACTGG 2 cut(s) 382, 920
Bse3DI GCAATG 2 cut(s) 152, 598
Bse8I GATNNNNATC 2 cut(s) 249, 699
BseBI CCWGG 4 cut(s) 67, 524, 836, 852
BseCI ATCGAT 1 cut(s) 534
BseDI CCNNGG 3 cut(s) 296, 747, 834
BseGI GGATG 2 cut(s) 225, 306
BseJI GATNNNNATC 2 cut(s) 249, 699
BseMI GCAATG 2 cut(s) 152, 598
BseMII CTCAG 2 cut(s) 135, 615
BseNI ACTGG 2 cut(s) 382, 920
BseRI GAGGAG 1 cut(s) 1052
BseXI GCAGC 4 cut(s) 104, 184, 187, 964
BsgI GTGCAG 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 876
BshVI ATCGAT 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 102
BsmAI GTCTC 2 cut(s) 520, 906
BsmI GAATGC 2 cut(s) 576, 796
Bso31I GGTCTC 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 250, 285
BspACI CCGC 1 cut(s) 876
BspCNI CTCAG 2 cut(s) 134, 614
BspDI ATCGAT 1 cut(s) 534
BspFNI CGCG 1 cut(s) 876
BspHI TCATGA 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 520
BsrDI GCAATG 2 cut(s) 152, 598
BsrI ACTGG 2 cut(s) 382, 920
BssECI CCNNGG 3 cut(s) 296, 747, 834
BssMI GATC 2 cut(s) 250, 285
BssT1I CCWWGG 1 cut(s) 747
Bst2UI CCWGG 4 cut(s) 67, 524, 836, 852
Bst4CI ACNGT 5 cut(s) 261, 676, 682, 799, 991
BstAPI GCANNNNNTGC 2 cut(s) 593, 597
BstC8I GCNNGC 3 cut(s) 215, 589, 598
BstDEI CTNAG 2 cut(s) 121, 601
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 2 cut(s) 225, 306
BstFNI CGCG 1 cut(s) 876
BstKTI GATC 2 cut(s) 253, 288
BstMAI GTCTC 2 cut(s) 520, 906
BstMBI GATC 2 cut(s) 250, 285
BstMWI GCNNNNNNNGC 3 cut(s) 106, 593, 597
BstNI CCWGG 4 cut(s) 67, 524, 836, 852
BstSCI CCNGG 4 cut(s) 65, 522, 834, 850
BstUI CGCG 1 cut(s) 876
BstV1I GCAGC 4 cut(s) 104, 184, 187, 964
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 534
BsuTUI ATCGAT 1 cut(s) 534
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 2 cut(s) 225, 306
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 3 cut(s) 489, 687, 996
Cac8I GCNNGC 3 cut(s) 215, 589, 598
CciI TCATGA 1 cut(s) 652
Cfr13I GGNCC 2 cut(s) 341, 355
ClaI ATCGAT 1 cut(s) 534
Csp6I GTAC 8 cut(s) 257, 492, 539, 672, 686, 722, 865, 987
CviAII CATG 6 cut(s) 17, 653, 868, 904, 932, 939
CviQI GTAC 8 cut(s) 257, 492, 539, 672, 686, 722, 865, 987
DdeI CTNAG 2 cut(s) 121, 601
DpnI GATC 2 cut(s) 252, 287
DpnII GATC 2 cut(s) 250, 285
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 341, 355
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 411, 443
EcoICRI GAGCTC 1 cut(s) 100
EcoRII CCWGG 4 cut(s) 65, 522, 834, 850
EcoT14I CCWWGG 1 cut(s) 747
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 747
FaeI CATG 6 cut(s) 20, 656, 871, 907, 935, 942
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FatI CATG 6 cut(s) 16, 652, 867, 903, 931, 938
FauI CCCGC 1 cut(s) 869
FblI GTMKAC 1 cut(s) 881
Fnu4HI GCNGC 4 cut(s) 118, 198, 201, 978
FokI GGATG 2 cut(s) 212, 313
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 4 cut(s) 118, 198, 201, 978
FspBI CTAG 5 cut(s) 146, 254, 276, 437, 1116
GluI GCNGC 4 cut(s) 118, 198, 201, 978
GsuI CTGGAG 2 cut(s) 88, 930
Hin1II CATG 6 cut(s) 20, 656, 871, 907, 935, 942
HindIII AAGCTT 2 cut(s) 128, 1012
HinfI GANTC 4 cut(s) 80, 305, 447, 614
HphI GGTGA 3 cut(s) 227, 583, 763
Hpy166II GTNNAC 3 cut(s) 492, 882, 994
Hpy188I TCNGA 4 cut(s) 124, 138, 391, 462
Hpy188III TCNNGA 6 cut(s) 517, 556, 653, 787, 971, 1001
Hpy8I GTNNAC 3 cut(s) 492, 882, 994
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 5 cut(s) 261, 676, 682, 799, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 593, 597
HpyF3I CTNAG 2 cut(s) 121, 601
Hsp92II CATG 6 cut(s) 20, 656, 871, 907, 935, 942
Kzo9I GATC 2 cut(s) 250, 285
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 4 cut(s) 104, 184, 187, 964
LweI GCATC 2 cut(s) 415, 783
MaeI CTAG 5 cut(s) 146, 254, 276, 437, 1116
MaeIII GTNAC 5 cut(s) 349, 676, 751, 942, 961
MalI GATC 2 cut(s) 252, 287
MboI GATC 2 cut(s) 250, 285
MboII GAAGA 1 cut(s) 831
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 4 cut(s) 84, 503, 648, 1103
MlyI GAGTC 2 cut(s) 74, 314
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 6 cut(s) 364, 489, 493, 967, 1030, 1033
MseI TTAA 4 cut(s) 105, 366, 549, 1086
MspR9I CCNGG 4 cut(s) 67, 524, 836, 852
Mva1269I GAATGC 2 cut(s) 576, 796
MvaI CCWGG 4 cut(s) 67, 524, 836, 852
MvnI CGCG 1 cut(s) 876
MwoI GCNNNNNNNGC 3 cut(s) 106, 593, 597
NdeII GATC 2 cut(s) 250, 285
NlaIII CATG 6 cut(s) 20, 656, 871, 907, 935, 942
NmuCI GTSAC 3 cut(s) 751, 942, 961
PagI TCATGA 1 cut(s) 652
PctI GAATGC 2 cut(s) 576, 796
PfeI GAWTC 2 cut(s) 447, 614
PkrI GCNGC 4 cut(s) 119, 199, 202, 979
PleI GAGTC 2 cut(s) 74, 313
PpsI GAGTC 2 cut(s) 74, 313
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 4 cut(s) 65, 522, 834, 850
PspGI CCWGG 4 cut(s) 65, 522, 834, 850
PspPI GGNCC 2 cut(s) 341, 355
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 8 cut(s) 258, 493, 540, 673, 687, 723, 866, 988
RsaNI GTAC 8 cut(s) 257, 492, 539, 672, 686, 722, 865, 987
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 105, 366, 549, 1086
SatI GCNGC 4 cut(s) 118, 198, 201, 978
Sau3AI GATC 2 cut(s) 250, 285
Sau96I GGNCC 2 cut(s) 341, 355
ScaI AGTACT 2 cut(s) 258, 723
SchI GAGTC 2 cut(s) 74, 314
ScrFI CCNGG 4 cut(s) 67, 524, 836, 852
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 415, 783
SinI GGWCC 2 cut(s) 341, 355
SmlI CTYRAG 1 cut(s) 971
SmoI CTYRAG 1 cut(s) 971
Sse9I AATT 4 cut(s) 84, 503, 648, 1103
SsiI CCGC 1 cut(s) 876
SspMI CTAG 5 cut(s) 146, 254, 276, 437, 1116
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 4 cut(s) 65, 522, 834, 850
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 5 cut(s) 261, 676, 682, 799, 991
TaqI TCGA 4 cut(s) 42, 518, 534, 786
TasI AATT 4 cut(s) 84, 503, 648, 1103
TatI WGTACW 5 cut(s) 256, 538, 671, 721, 864
TfiI GAWTC 2 cut(s) 447, 614
Tru1I TTAA 4 cut(s) 105, 366, 549, 1086
Tru9I TTAA 4 cut(s) 105, 366, 549, 1086
TscAI CASTG 3 cut(s) 489, 687, 996
TseFI GTSAC 3 cut(s) 751, 942, 961
TseI GCWGC 4 cut(s) 117, 197, 200, 977
Tsp45I GTSAC 3 cut(s) 751, 942, 961
TspDTI ATGAA 4 cut(s) 641, 846, 892, 927
TspGWI ACGGA 2 cut(s) 368, 1098
TspRI CASTG 3 cut(s) 489, 687, 996
VpaK11BI GGWCC 2 cut(s) 341, 355
XapI RAATTY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 988
XmiI GTMKAC 1 cut(s) 881
XspI CTAG 5 cut(s) 146, 254, 276, 437, 1116
ZrmI AGTACT 2 cut(s) 258, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.