RchiOBHm_Chr6g0278801

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012576
Physical Location & Seq
Forward (+)
41895191 .. 41896573
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25009

Sequence Viewer

Length: 600 bp
ATGGAGCTGATTCTTTGTTGTGGACCACATAATCAGGTGAGCATTCCAAATGCAAGCAATGCTTGCTCAGGTTTTGATGATTCGTTCGGGTGGTCTTTCTTTGATTTGAATGTAATTCATGATGACCACAAAGATAGTACAGTAACAGTGGTACAAGCTGATTTTTATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTGCCAAGGTGACATCTTACCTGTCAAAGTGCATCAAGGACTTCGAGAATGCTACTGTGATAAATAAGGAGATTGGAAGATTTCCAAAATCCCTGGCTCATTTCTTTCCAGGTTCATACAAGTACATGATACGCGGGTCTACATCTTTCCCAAACTTGTTCATGGCTGGAGACTGGATTACAACCCGACATGGTTCATGGTCACAGGAGAAATCTTATGTCACGGGTCTTGAGGCTGCCAATCGTACAGTGGACTATCTTGAAGTAGGAAGCTTTGCTAAAATAATACCTGTTGAGGAGGACGAACCACACATTCAAGCACTTCGTAGCCTAAACAGAAGTTTTAATGACATCAAAGCCCAATTTCCGTTATCTAGTTATTTCCTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

199

Amino Acids

22.48

Weight (kDa)

5.64

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amino_oxidase PF01593 47 - 151 7.4e-08 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 347
AccII CGCG 1 cut(s) 342
AciI CCGC 1 cut(s) 342
AfaI GTAC 5 cut(s) 139, 153, 189, 332, 454
AgsI TTSAA 3 cut(s) 109, 470, 524
AjnI CCWGG 2 cut(s) 300, 316
AluBI AGCT 3 cut(s) 7, 158, 480
AluI AGCT 3 cut(s) 7, 158, 480
Alw26I GTCTC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 49, 229
AvaII GGWCC 1 cut(s) 23
BaeI ACNNNNGTAYC 2 cut(s) 329, 362
BbvI GCAGC 1 cut(s) 430
BciT130I CCWGG 2 cut(s) 302, 318
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 582
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
BmcAI AGTACT 1 cut(s) 189
Bme1390I CCNGG 2 cut(s) 302, 318
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 302, 318
BmsI GCATC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 458
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 213, 300
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 64
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 2 cut(s) 302, 318
BseDI CCNNGG 2 cut(s) 213, 300
BseJI GATNNNNATC 1 cut(s) 165
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 1 cut(s) 430
Bsh1236I CGCG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 372
BsmI GAATGC 2 cut(s) 42, 262
BspACI CCGC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 1 cut(s) 342
BspHI TCATGA 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 213, 300
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 302, 318
Bst4CI ACNGT 4 cut(s) 142, 148, 265, 457
BstAPI GCANNNNNTGC 2 cut(s) 59, 63
BstC8I GCNNGC 2 cut(s) 55, 64
BstDEI CTNAG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 372
BstMWI GCNNNNNNNGC 2 cut(s) 59, 63
BstNI CCWGG 2 cut(s) 302, 318
BstSCI CCNGG 2 cut(s) 300, 316
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 430
BtsIMutI CAGTG 2 cut(s) 153, 462
Cac8I GCNNGC 2 cut(s) 55, 64
CciI TCATGA 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 5 cut(s) 138, 152, 188, 331, 453
CviAII CATG 5 cut(s) 119, 334, 370, 398, 405
CviJI RGCY 8 cut(s) 7, 158, 305, 374, 443, 480, 537, 566
CviKI_1 RGCY 8 cut(s) 7, 158, 305, 374, 443, 480, 537, 566
CviQI GTAC 5 cut(s) 138, 152, 188, 331, 453
DdeI CTNAG 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 300, 316
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 5 cut(s) 122, 337, 373, 401, 408
FaiI YATR 8 cut(s) 30, 120, 325, 335, 371, 399, 406, 426
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 5 cut(s) 118, 333, 369, 397, 404
FauI CCCGC 1 cut(s) 335
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 444
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 1 cut(s) 582
GluI GCNGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 396
Hin1II CATG 5 cut(s) 122, 337, 373, 401, 408
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 2 cut(s) 10, 80
HphI GGTGA 2 cut(s) 49, 229
Hpy166II GTNNAC 3 cut(s) 23, 348, 460
Hpy188III TCNNGA 4 cut(s) 119, 253, 437, 467
Hpy8I GTNNAC 3 cut(s) 23, 348, 460
HpyCH4III ACNGT 4 cut(s) 142, 148, 265, 457
HpyCH4V TGCA 2 cut(s) 53, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 63
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 5 cut(s) 122, 337, 373, 401, 408
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 4 cut(s) 142, 217, 408, 427
MboII GAAGA 1 cut(s) 297
MluCI AATT 2 cut(s) 114, 569
MnlI CCTC 3 cut(s) 433, 496, 499
MseI TTAA 1 cut(s) 552
MspR9I CCNGG 2 cut(s) 302, 318
Mva1269I GAATGC 2 cut(s) 42, 262
MvaI CCWGG 2 cut(s) 302, 318
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 59, 63
NlaIII CATG 5 cut(s) 122, 337, 373, 401, 408
NmuCI GTSAC 3 cut(s) 217, 408, 427
PagI TCATGA 1 cut(s) 118
PctI GAATGC 2 cut(s) 42, 262
PfeI GAWTC 2 cut(s) 10, 80
PkrI GCNGC 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 300, 316
PspGI CCWGG 2 cut(s) 300, 316
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 5 cut(s) 139, 153, 189, 332, 454
RsaNI GTAC 5 cut(s) 138, 152, 188, 331, 453
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 1 cut(s) 444
Sau96I GGNCC 1 cut(s) 23
ScaI AGTACT 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 302, 318
SetI ASST 9 cut(s) 9, 39, 73, 160, 219, 231, 322, 482, 499
SfaNI GCATC 1 cut(s) 249
SinI GGWCC 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 2 cut(s) 114, 569
SsiI CCGC 1 cut(s) 342
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 300, 316
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 4 cut(s) 142, 148, 265, 457
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 114, 569
TatI WGTACW 3 cut(s) 137, 187, 330
TfiI GAWTC 2 cut(s) 10, 80
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 2 cut(s) 153, 462
TseFI GTSAC 3 cut(s) 217, 408, 427
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 3 cut(s) 217, 408, 427
TspDTI ATGAA 4 cut(s) 107, 312, 358, 393
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 2 cut(s) 153, 462
VpaK11BI GGWCC 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 1 cut(s) 582
ZrmI AGTACT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.