Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012576

Physical Location & Seq

Genomic Coordinates Forward (+)

31408655 .. 31412309

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCATGTCTTCGAAGGATTTAGGAGGCTTCGAATTGTGTTATCTAGTCATGAAGGTTTCTGTAGCCAGGGCTTTGATGTTACTGTACTTGAAAATGATAGTCTTGATGATGTGGGTATCCATGCTGAGGGATTGGAGGTTGAATTTCCAGTATTTCGAGACCTTCCTCAGTTGCCAACTCCATTAGGAACCTTGTACTATTCACAGTTTGTTCAGTTGCCGTTGGTTGATAGATTAACTTCACTTCCTTTAACGGCTGCAGTAATCGACTTTGACAATACTGCTACCGCCTGGAGAAAATATGACTCAAGGCTCTTTAAGCAATTTGGCTGCTCACAAAAGCTTTATCAGAAAGTCCTAGCACCATTGCTTCAAGTGGGTCTGTTTGCCCCAGCAGAACAATGTAGTGCTGCTGCTACTCTGGGCTTGCTATCCTACATCCTTGCTCACCAGAAAGATTTTGATCTAGTGTTGTGTCGTGGAACAACTAGGGAAAAGATCTTTAAGCCGTGGATGGAGTCTATGACAACCAAAGGTTGCAAGTTTGAGAAAGGTCTAAGTGTAACAGACCTTTTGCTTAATGAGGAAACTGGCTGTATTTCTGAAGTAGTTTGTGGCAAAGAAATGTATAGTGCTGACGCAGTTGTCCTAGCTGTTGGAATCTCCACGCTTCGGAAACTTATTGAAAACAGTCGATGGTACTTTTTCGGTCATGATTTGATGGAGCTGATTCTTTGTTGTGGACCACATAATCAGGTGAACATTCCAAATGCAAGCAATGCTTGCTCAGGTTTTGATGATTCGTTCGGGTGGTCTTTCTTTGATTTGAATGTAATTCATGATGACCACAAAGATAGTGCAGTAACAGTGCTACAAGCTGATTTTGTGAGAACCAATGCTCTTGCTTTTCTTCTGATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

307

Amino Acids

34.31

Weight (kDa)

5.08

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15600
malus_domestica	MD05G1124600.v1.1
prunus_persica	Prupe.8G168300_v2.0.a1
pyrus_communis	pycom05g11860
rosa_chinensis	RchiOBHm_Chr6g0255801 RchiOBHm_Chr6g0278781 RchiOBHm_Chr6g0278801
rosa_laevigata	RLG00000013193
rosa_multiflora	Rmu_sc0004380.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353520 Rroxscaffold_7G00189630 Rroxscaffold_7G00189900
rosa_rugosa	Rorug06G0119000
rosa_samantha	Rh5BG115500 Rh6AG227700 Rh6BG233300 Rh6CG235800 Rh6DG227000
rosa_wichuraiana	Rw6G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	644
AciI	CCGC	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	624
AfaI	GTAC	3 cut(s)	87, 197, 701
AfiI	CCNNNNNNNGG	2 cut(s)	127, 672
AgsI	TTSAA	5 cut(s)	92, 143, 374, 686, 829
AjnI	CCWGG	2 cut(s)	66, 290
AluBI	AGCT	4 cut(s)	343, 653, 727, 878
AluI	AGCT	4 cut(s)	343, 653, 727, 878
Alw26I	GTCTC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	257, 330, 410, 413
ApoI	RAATTY	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	2 cut(s)	440, 769
AsuII	TTCGAA	2 cut(s)	12, 31
AvaII	GGWCC	1 cut(s)	743
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	244, 317, 397, 400
BccI	CCATC	3 cut(s)	508, 690, 715
BceAI	ACGGC	3 cut(s)	205, 270, 493
BciT130I	CCWGG	2 cut(s)	68, 292
BciVI	GTATCC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	5 cut(s)	45, 359, 467, 489, 650
BfmI	CTRYAG	2 cut(s)	61, 258
BfuI	GTATCC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	498
BisI	GCNGC	4 cut(s)	258, 331, 411, 414
BlsI	GCNGC	4 cut(s)	259, 332, 412, 415
Bme1390I	CCNGG	2 cut(s)	68, 292
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	68, 292
BpmI	CTGGAG	1 cut(s)	313
Bpu10I	CCTNAGC	2 cut(s)	126, 787
Bpu14I	TTCGAA	2 cut(s)	12, 31
BpuEI	CTTGAG	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	67, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 672
Bse1I	ACTGG	2 cut(s)	149, 595
Bse3DI	GCAATG	2 cut(s)	365, 784
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	68, 292
BseDI	CCNNGG	2 cut(s)	67, 509
BseGI	GGATG	2 cut(s)	438, 519
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	127, 672
BseMI	GCAATG	2 cut(s)	365, 784
BseMII	CTCAG	3 cut(s)	117, 182, 801
BseNI	ACTGG	2 cut(s)	149, 595
BseXI	GCAGC	4 cut(s)	244, 317, 397, 400
BseYI	CCCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	879
BslI	CCNNNNNNNGG	2 cut(s)	127, 672
BsmAI	GTCTC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	153
Bsp119I	TTCGAA	2 cut(s)	12, 31
Bsp143I	GATC	2 cut(s)	463, 498
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	3 cut(s)	118, 181, 800
BspHI	TCATGA	3 cut(s)	49, 712, 838
BspLI	GGNNCC	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	262
BspT104I	TTCGAA	2 cut(s)	12, 31
BspTNI	GGTCTC	1 cut(s)	153
BsrDI	GCAATG	2 cut(s)	365, 784
BsrI	ACTGG	2 cut(s)	149, 595
BssECI	CCNNGG	2 cut(s)	67, 509
BssMI	GATC	2 cut(s)	463, 498
Bst2UI	CCWGG	2 cut(s)	68, 292
Bst4CI	ACNGT	4 cut(s)	85, 207, 692, 868
BstAPI	GCANNNNNTGC	2 cut(s)	779, 783
BstBI	TTCGAA	2 cut(s)	12, 31
BstC8I	GCNNGC	3 cut(s)	428, 775, 784
BstDEI	CTNAG	4 cut(s)	126, 168, 557, 787
BstDSI	CCRYGG	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	438, 519
BstKTI	GATC	2 cut(s)	466, 501
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	2 cut(s)	463, 498
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 779, 783
BstNI	CCWGG	2 cut(s)	68, 292
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	66, 290
BstSFI	CTRYAG	2 cut(s)	61, 258
BstV1I	GCAGC	4 cut(s)	244, 317, 397, 400
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	438, 519
BtsIMutI	CAGTG	1 cut(s)	873
Cac8I	GCNNGC	3 cut(s)	428, 775, 784
CciI	TCATGA	3 cut(s)	49, 712, 838
Cfr13I	GGNCC	1 cut(s)	743
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	3 cut(s)	86, 196, 700
CviAII	CATG	5 cut(s)	5, 50, 122, 713, 839
CviQI	GTAC	3 cut(s)	86, 196, 700
DdeI	CTNAG	4 cut(s)	126, 168, 557, 787
DpnI	GATC	2 cut(s)	465, 500
DpnII	GATC	2 cut(s)	463, 498
DrdI	GACNNNNNNGTC	1 cut(s)	644
DseDI	GACNNNNNNGTC	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	1 cut(s)	624
EcoRII	CCWGG	2 cut(s)	66, 290
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	5 cut(s)	8, 53, 125, 716, 842
FaiI	YATR	9 cut(s)	6, 51, 123, 303, 524, 630, 714, 750, 840
FalI	AAGNNNNNCTT	2 cut(s)	766, 798
FatI	CATG	5 cut(s)	4, 49, 121, 712, 838
Fnu4HI	GCNGC	4 cut(s)	258, 331, 411, 414
FokI	GGATG	2 cut(s)	425, 526
Fsp4HI	GCNGC	4 cut(s)	258, 331, 411, 414
FspBI	CTAG	5 cut(s)	45, 359, 467, 489, 650
GluI	GCNGC	4 cut(s)	258, 331, 411, 414
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	313
HgaI	GACGC	1 cut(s)	647
Hin1II	CATG	5 cut(s)	8, 53, 125, 716, 842
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	5 cut(s)	305, 518, 660, 730, 800
HphI	GGTGA	2 cut(s)	440, 769
Hpy166II	GTNNAC	2 cut(s)	743, 760
Hpy188I	TCNGA	4 cut(s)	351, 604, 675, 915
Hpy188III	TCNNGA	5 cut(s)	50, 104, 158, 713, 839
Hpy8I	GTNNAC	2 cut(s)	743, 760
HpyAV	CCTTC	3 cut(s)	8, 47, 173
HpyCH4III	ACNGT	4 cut(s)	85, 207, 692, 868
HpyCH4V	TGCA	5 cut(s)	4, 260, 540, 773, 860
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 779, 783
HpyF3I	CTNAG	4 cut(s)	126, 168, 557, 787
Hsp92II	CATG	5 cut(s)	8, 53, 125, 716, 842
Kzo9I	GATC	2 cut(s)	463, 498
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	4 cut(s)	244, 317, 397, 400
MaeI	CTAG	5 cut(s)	45, 359, 467, 489, 650
MaeIII	GTNAC	3 cut(s)	79, 562, 862
MalI	GATC	2 cut(s)	465, 500
MboI	GATC	2 cut(s)	463, 498
MboII	GAAGA	1 cut(s)	902
MflI	RGATCY	1 cut(s)	498
MluCI	AATT	4 cut(s)	33, 143, 323, 834
MlyI	GAGTC	2 cut(s)	299, 527
MmeI	TCCRAC	1 cut(s)	637
MnlI	CCTC	5 cut(s)	18, 121, 130, 177, 577
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	236, 251, 318, 504, 579
MspR9I	CCNGG	2 cut(s)	68, 292
MvaI	CCWGG	2 cut(s)	68, 292
MwoI	GCNNNNNNNGC	3 cut(s)	319, 779, 783
NdeII	GATC	2 cut(s)	463, 498
NlaIII	CATG	5 cut(s)	8, 53, 125, 716, 842
NlaIV	GGNNCC	1 cut(s)	190
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	2 cut(s)	12, 31
PagI	TCATGA	3 cut(s)	49, 712, 838
PfeI	GAWTC	3 cut(s)	660, 730, 800
PkrI	GCNGC	4 cut(s)	259, 332, 412, 415
PleI	GAGTC	2 cut(s)	299, 526
PpsI	GAGTC	2 cut(s)	299, 526
Psp6I	CCWGG	2 cut(s)	66, 290
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	2 cut(s)	66, 290
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	743
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	498
RsaI	GTAC	3 cut(s)	87, 197, 701
RsaNI	GTAC	3 cut(s)	86, 196, 700
SaqAI	TTAA	5 cut(s)	236, 251, 318, 504, 579
SatI	GCNGC	4 cut(s)	258, 331, 411, 414
Sau3AI	GATC	2 cut(s)	463, 498
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	2 cut(s)	299, 527
ScrFI	CCNGG	2 cut(s)	68, 292
SfcI	CTRYAG	2 cut(s)	61, 258
SfuI	TTCGAA	2 cut(s)	12, 31
SinI	GGWCC	1 cut(s)	743
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	4 cut(s)	33, 143, 323, 834
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	5 cut(s)	45, 359, 467, 489, 650
StyD4I	CCNGG	2 cut(s)	66, 290
TaaI	ACNGT	4 cut(s)	85, 207, 692, 868
TaqI	TCGA	5 cut(s)	12, 31, 157, 267, 694
TaqII	GACCGA	1 cut(s)	698
TasI	AATT	4 cut(s)	33, 143, 323, 834
TatI	WGTACW	2 cut(s)	85, 195
TfiI	GAWTC	3 cut(s)	660, 730, 800
Tru1I	TTAA	5 cut(s)	236, 251, 318, 504, 579
Tru9I	TTAA	5 cut(s)	236, 251, 318, 504, 579
TscAI	CASTG	1 cut(s)	873
TseI	GCWGC	4 cut(s)	257, 330, 410, 413
TspDTI	ATGAA	2 cut(s)	66, 827
TspRI	CASTG	1 cut(s)	873
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	5 cut(s)	45, 359, 467, 489, 650
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.