Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012576

Physical Location & Seq

Genomic Coordinates Forward (+)

41892303 .. 41894729

Gene Structure 2427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTTGTTGGCTTCTTGTTGGAGATTCCCTCTCACAGTTCTTCCAGTTCCAACGACACCGCGTTTCGCTCCCAGGTACCCAACTGGGTCGACTCGTCGCAGCAGAGCTTCTGCCCAACTCGACCTTGCAGTCGCTGATGATGGACCAAACGACGACAAGAAAGTCAAGAAGGTTATCGTTGTTGGCTCTGGCTGGGCTGGCCTTGGCGCTGCCCACCACCTCTGCAACCAGGGCTTTGATGTTACTGTTCTTGAAAACGATAGTCGTATTGATGATGTGGGTATCCATGGTTATTGGTATCCCTACCGGAATATATTCAGCCTTGTTGATGAGCTGGGGATTAAACCCTTCACTAACTGGACTAAGTTTGCGCAATATTCAGCTGAGGGATTGGAGGTTGAATTTCCGGTATTTCAAGACCTTCCTCAGCTGCCAACTCCTTTAGGAACCTTGTACTATTCACAGTTTGTTCAGTTGCCGTTGGTTGATAGATTAACTTCACTTCCTTTAACGGCTGCAGTAATCGACTTTGACAATACTGATACAGCCTGGAGAAAATATGACTCAATTACTGCAAGGGAGCTCTTTAAGCAGTTTGGCTGCTCAGAAAAGCTTTATCAGAAAGTCCTAGCACCATTGCTTCAAGTGGGTCTGTTTGCACCAGCAGAACAATGTAGTGCTGCTGCTACTCTGGGCTTGCTATCCTACATCCTTGCTCACCAGAAAGATTTTGATCTAGTACTGTGTCGTGGAACAACTAGGGAAAAGATCTTTCAGCCGTGGATGGAGTCTATGACAACCAAAGGTTGCAAGTTTGAGAAAGGTCCAAGTGTAACGGACCTTTTGCTTAATGAGGAAACTGGTTGTATTTCTGAAGTAGTTTGTGGCAAAGAAATGTATAGTGCTGATGCAGTTGTCCTAGCTGTTGGAATCTCCACGCTTCAGAAACTTATTGAAAATAGGTATTTTGTTATTAAATCTCAGAATGTTTTATGCAAATATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

335

Amino Acids

37.37

Weight (kDa)

5.88

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	57 - 89	6.6e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	60 - 90	5.2e-07	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15600
malus_domestica	MD05G1124600.v1.1
prunus_persica	Prupe.8G168300_v2.0.a1
pyrus_communis	pycom05g11860
rosa_chinensis	RchiOBHm_Chr6g0255801 RchiOBHm_Chr6g0278781 RchiOBHm_Chr6g0278801
rosa_laevigata	RLG00000013193
rosa_multiflora	Rmu_sc0004380.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353520 Rroxscaffold_7G00189630 Rroxscaffold_7G00189900
rosa_rugosa	Rorug06G0119000
rosa_samantha	Rh5BG115500 Rh6AG227700 Rh6BG233300 Rh6CG235800 Rh6DG227000
rosa_wichuraiana	Rw6G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	128, 161
Acc16I	TGCGCA	1 cut(s)	372
Acc65I	GGTACC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	1 cut(s)	61
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	2 cut(s)	894, 926
AfaI	GTAC	3 cut(s)	77, 455, 741
AgsI	TTSAA	5 cut(s)	254, 401, 416, 644, 956
AjnI	CCWGG	3 cut(s)	71, 228, 548
AluBI	AGCT	7 cut(s)	107, 334, 383, 430, 583, 613, 923
AluI	AGCT	7 cut(s)	107, 334, 383, 430, 583, 613, 923
Alw21I	GWGCWC	1 cut(s)	585
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	7 cut(s)	99, 209, 430, 515, 600, 680, 683
ApoI	RAATTY	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	314
Asp718I	GGTACC	1 cut(s)	75
AspLEI	GCGC	2 cut(s)	209, 373
AspS9I	GGNCC	3 cut(s)	143, 824, 838
AsuHPI	GGTGA	1 cut(s)	710
AvaII	GGWCC	3 cut(s)	143, 824, 838
BanI	GGYRCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	585
BbvCI	CCTCAGC	2 cut(s)	384, 426
BbvI	GCAGC	7 cut(s)	111, 196, 417, 502, 587, 667, 670
BccI	CCATC	2 cut(s)	134, 778
BceAI	ACGGC	3 cut(s)	463, 528, 763
BciT130I	CCWGG	3 cut(s)	73, 230, 550
BciVI	GTATCC	2 cut(s)	293, 309
BfaI	CTAG	4 cut(s)	629, 737, 759, 920
BfmI	CTRYAG	1 cut(s)	516
BfoI	RGCGCY	1 cut(s)	210
BfuI	GTATCC	2 cut(s)	293, 309
BglII	AGATCT	1 cut(s)	768
BisI	GCNGC	7 cut(s)	100, 210, 431, 516, 601, 681, 684
BlsI	GCNGC	7 cut(s)	101, 211, 432, 517, 602, 682, 685
BmcAI	AGTACT	1 cut(s)	741
Bme1390I	CCNGG	3 cut(s)	73, 230, 550
Bme18I	GGWCC	3 cut(s)	143, 824, 838
BmgT120I	GGNCC	3 cut(s)	143, 824, 838
BmiI	GGNNCC	2 cut(s)	77, 448
BmrFI	CCNGG	3 cut(s)	73, 230, 550
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	898
BmuI	ACTGGG	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpmI	CTGGAG	1 cut(s)	571
Bpu10I	CCTNAGC	2 cut(s)	384, 426
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	5 cut(s)	71, 202, 229, 286, 779
BsaWI	WCCGGW	2 cut(s)	306, 406
Bse1I	ACTGG	4 cut(s)	44, 88, 362, 865
Bse3DI	GCAATG	1 cut(s)	635
Bse8I	GATNNNNATC	1 cut(s)	732
BseBI	CCWGG	3 cut(s)	73, 230, 550
BseDI	CCNNGG	5 cut(s)	71, 202, 229, 286, 779
BseGI	GGATG	2 cut(s)	708, 789
BseJI	GATNNNNATC	1 cut(s)	732
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	4 cut(s)	375, 440, 618, 995
BseNI	ACTGG	4 cut(s)	44, 88, 362, 865
BseXI	GCAGC	7 cut(s)	111, 196, 417, 502, 587, 667, 670
BseYI	CCCAGC	2 cut(s)	192, 334
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	2 cut(s)	307, 407
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	2 cut(s)	733, 768
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	4 cut(s)	376, 439, 617, 994
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	77, 448
BspMAI	CTGCAG	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	635
BsrI	ACTGG	4 cut(s)	44, 88, 362, 865
BssECI	CCNNGG	5 cut(s)	71, 202, 229, 286, 779
BssMI	GATC	2 cut(s)	733, 768
BssT1I	CCWWGG	2 cut(s)	202, 286
Bst2UI	CCWGG	3 cut(s)	73, 230, 550
Bst4CI	ACNGT	4 cut(s)	37, 247, 465, 744
BstC8I	GCNNGC	2 cut(s)	199, 698
BstDEI	CTNAG	5 cut(s)	363, 384, 426, 604, 981
BstDSI	CCRYGG	2 cut(s)	286, 779
BstF5I	GGATG	2 cut(s)	708, 789
BstFNI	CGCG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	209, 373
BstKTI	GATC	2 cut(s)	736, 771
BstMBI	GATC	2 cut(s)	733, 768
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 231, 589
BstNI	CCWGG	3 cut(s)	73, 230, 550
BstSCI	CCNGG	3 cut(s)	71, 228, 548
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	7 cut(s)	111, 196, 417, 502, 587, 667, 670
BstX2I	RGATCY	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	768
BsuI	GTATCC	2 cut(s)	293, 309
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	2 cut(s)	286, 779
BtsCI	GGATG	2 cut(s)	708, 789
Cac8I	GCNNGC	2 cut(s)	199, 698
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	2 cut(s)	209, 373
Cfr13I	GGNCC	3 cut(s)	143, 824, 838
Csp6I	GTAC	3 cut(s)	76, 454, 740
CviAII	CATG	1 cut(s)	287
CviQI	GTAC	3 cut(s)	76, 454, 740
DdeI	CTNAG	5 cut(s)	363, 384, 426, 604, 981
DpnI	GATC	2 cut(s)	735, 770
DpnII	GATC	2 cut(s)	733, 768
DrdI	GACNNNNNNGTC	2 cut(s)	128, 161
DseDI	GACNNNNNNGTC	2 cut(s)	128, 161
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	2 cut(s)	202, 286
Eco24I	GRGCYC	1 cut(s)	585
Eco47I	GGWCC	3 cut(s)	143, 824, 838
Eco53kI	GAGCTC	1 cut(s)	583
Eco57I	CTGAAG	2 cut(s)	894, 926
EcoICRI	GAGCTC	1 cut(s)	583
EcoRII	CCWGG	3 cut(s)	71, 228, 548
EcoT14I	CCWWGG	2 cut(s)	202, 286
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	2 cut(s)	202, 286
FaeI	CATG	1 cut(s)	290
FaiI	YATR	6 cut(s)	288, 314, 561, 794, 900, 994
FatI	CATG	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	7 cut(s)	100, 210, 431, 516, 601, 681, 684
FokI	GGATG	2 cut(s)	695, 796
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	7 cut(s)	100, 210, 431, 516, 601, 681, 684
FspBI	CTAG	4 cut(s)	629, 737, 759, 920
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	2 cut(s)	208, 372
GluI	GCNGC	7 cut(s)	100, 210, 431, 516, 601, 681, 684
GsaI	CCCAGC	2 cut(s)	196, 338
GsuI	CTGGAG	1 cut(s)	571
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	2 cut(s)	307, 407
HhaI	GCGC	2 cut(s)	209, 373
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	2 cut(s)	207, 371
HinP1I	GCGC	2 cut(s)	207, 371
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	5 cut(s)	24, 91, 563, 788, 930
HpaII	CCGG	2 cut(s)	307, 407
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	5 cut(s)	607, 621, 874, 945, 984
Hpy188III	TCNNGA	3 cut(s)	166, 251, 416
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	2 cut(s)	99, 155
HpyAV	CCTTC	3 cut(s)	163, 358, 431
HpyCH4III	ACNGT	4 cut(s)	37, 247, 465, 744
HpyCH4V	TGCA	8 cut(s)	128, 225, 518, 575, 659, 810, 911, 996
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 231, 589
HpyF3I	CTNAG	5 cut(s)	363, 384, 426, 604, 981
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	2 cut(s)	207, 371
KpnI	GGTACC	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	733, 768
LmnI	GCTCC	2 cut(s)	73, 580
Lsp1109I	GCAGC	7 cut(s)	111, 196, 417, 502, 587, 667, 670
LweI	GCATC	1 cut(s)	898
MaeI	CTAG	4 cut(s)	629, 737, 759, 920
MaeIII	GTNAC	2 cut(s)	241, 832
MalI	GATC	2 cut(s)	735, 770
MboI	GATC	2 cut(s)	733, 768
MboII	GAAGA	1 cut(s)	32
MflI	RGATCY	1 cut(s)	768
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	2 cut(s)	401, 567
MlyI	GAGTC	3 cut(s)	85, 557, 797
MmeI	TCCRAC	2 cut(s)	74, 907
MnlI	CCTC	6 cut(s)	39, 230, 379, 388, 435, 847
MroXI	GAANNNNTTC	1 cut(s)	314
MseI	TTAA	6 cut(s)	342, 494, 509, 588, 849, 975
MspA1I	CMGCKG	2 cut(s)	383, 430
MspI	CCGG	2 cut(s)	307, 407
MspR9I	CCNGG	3 cut(s)	73, 230, 550
MvaI	CCWGG	3 cut(s)	73, 230, 550
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	3 cut(s)	198, 231, 589
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	2 cut(s)	733, 768
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	77, 448
NsbI	TGCGCA	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	24, 930
PkrI	GCNGC	7 cut(s)	101, 211, 432, 517, 602, 682, 685
PleI	GAGTC	3 cut(s)	85, 557, 796
PpsI	GAGTC	3 cut(s)	85, 557, 796
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	3 cut(s)	71, 228, 548
PspFI	CCCAGC	2 cut(s)	192, 334
PspGI	CCWGG	3 cut(s)	71, 228, 548
PspN4I	GGNNCC	2 cut(s)	77, 448
PspPI	GGNCC	3 cut(s)	143, 824, 838
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	768
PvuII	CAGCTG	2 cut(s)	383, 430
RsaI	GTAC	3 cut(s)	77, 455, 741
RsaNI	GTAC	3 cut(s)	76, 454, 740
SacI	GAGCTC	1 cut(s)	585
SalI	GTCGAC	1 cut(s)	88
SaqAI	TTAA	6 cut(s)	342, 494, 509, 588, 849, 975
SatI	GCNGC	7 cut(s)	100, 210, 431, 516, 601, 681, 684
Sau3AI	GATC	2 cut(s)	733, 768
Sau96I	GGNCC	3 cut(s)	143, 824, 838
ScaI	AGTACT	1 cut(s)	741
SchI	GAGTC	3 cut(s)	85, 557, 797
ScrFI	CCNGG	3 cut(s)	73, 230, 550
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	1 cut(s)	898
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	3 cut(s)	143, 824, 838
Sse9I	AATT	2 cut(s)	401, 567
SsiI	CCGC	1 cut(s)	59
SspI	AATATT	1 cut(s)	377
SspMI	CTAG	4 cut(s)	629, 737, 759, 920
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	3 cut(s)	71, 228, 548
StyI	CCWWGG	2 cut(s)	202, 286
TaaI	ACNGT	4 cut(s)	37, 247, 465, 744
TaqI	TCGA	3 cut(s)	89, 120, 525
TasI	AATT	2 cut(s)	401, 567
TatI	WGTACW	2 cut(s)	453, 739
TfiI	GAWTC	2 cut(s)	24, 930
Tru1I	TTAA	6 cut(s)	342, 494, 509, 588, 849, 975
Tru9I	TTAA	6 cut(s)	342, 494, 509, 588, 849, 975
TseI	GCWGC	7 cut(s)	99, 209, 430, 515, 600, 680, 683
TspGWI	ACGGA	1 cut(s)	851
VpaK11BI	GGWCC	3 cut(s)	143, 824, 838
XapI	RAATTY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	4 cut(s)	629, 737, 759, 920
ZrmI	AGTACT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.