Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004380.1

Orthogroup ID

OG0012576

Physical Location & Seq

Genomic Coordinates Forward (+)

9754 .. 17962

Gene Structure 8209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004380.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

atggcgggagctgcacctcaaggaatcccatttctatcactaaggactggcggttattggtatccctaccggaatatatttagccttgttgatgagctggagattaaacctttcactaactggactaagtttgcgcaatattcagctgagggattggaggttgaatttccggtatttcaagaccttcctcagctgccaacacctttaggaaccttgtactattcccagtttgttcagttgccgttggttgatagattaacttcacttcctttaacggctgcagtaatcgactttgacaatactgatacagcctggagaaaatatgactcaagtaaggatctctctatcactagtaaacaatgtagtgctgctgctactctgggcttgctatcctacatccttgctcaccagaaagatttcgatctagtactgtgtcgtggaacaactagggaaaagatctttaagccgtggatggagtctatgacaactaaaggttgcaagtttgagaaaggtccaagtgtaacggaccttttgcttaatgaggaaactggttgtatttctgaagtagtttgtggcaaagaaatgtatagtgctgatgcagttgtcctagctgttggaatctccgcgcttcagaaacttattgaaaatagtgcagtgttgtctacgagggaggaatttgtcaaggtctcgaacctggctaccatcgatgtactctgcgttaagctctggattgataggaaggtgagcattccaaatgccagcaatgcttgctcaggttttgatgattcgttcgggtggtctttctttgatttgaatgtaattcatgatgaccacaaagatagtacagtaacagtggtacaagctgatttttatcgtgccaatgagttgttagtactgacagataagcaaatagttgccaaggtgatatcttacctgtcaaagtgcatcaaggacttcgagaatgctactgtgataaataaggagattggaagatttccaaaatccctggctcatttctttccaggttcatacaagtacatgacacgtgggtctacatctttcccaaacttgttcatggctggagactggattacaacccgacatggttcatggtcacaggagaaatcttatgtcacgggtcttgaggctgccaaccgtacagtggactatcttgaagaaggaagctttgctaaaataatacctgttgaggaggatgaaccacacattcaaggacttcgtagcctaaacagaagtttcaatgacatcaaagcccaatttccgttatctagttatttcctccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

434

Amino Acids

48.7

Weight (kDa)

5.26

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15600
malus_domestica	MD05G1124600.v1.1
prunus_persica	Prupe.8G168300_v2.0.a1
pyrus_communis	pycom05g11860
rosa_chinensis	RchiOBHm_Chr6g0255801 RchiOBHm_Chr6g0278781 RchiOBHm_Chr6g0278801
rosa_laevigata	RLG00000013193
rosa_multiflora	Rmu_sc0004380.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353520 Rroxscaffold_7G00189630 Rroxscaffold_7G00189900
rosa_rugosa	Rorug06G0119000
rosa_samantha	Rh5BG115500 Rh6AG227700 Rh6BG233300 Rh6CG235800 Rh6DG227000
rosa_wichuraiana	Rw6G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1048
Acc16I	TGCGCA	1 cut(s)	135
AccI	GTMKAC	2 cut(s)	662, 1052
AccII	CGCG	1 cut(s)	626
AciI	CCGC	3 cut(s)	5, 51, 624
AclWI	GGATC	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	164, 674
AcuI	CTGAAG	2 cut(s)	582, 614
AcvI	CACGTG	1 cut(s)	1046
AfaI	GTAC	8 cut(s)	218, 429, 711, 844, 858, 894, 1037, 1159
AfiI	CCNNNNNNNGG	1 cut(s)	1162
AflIII	ACRYGT	1 cut(s)	1043
AgsI	TTSAA	7 cut(s)	164, 179, 644, 814, 1175, 1229, 1258
AhlI	ACTAGT	1 cut(s)	350
AjnI	CCWGG	4 cut(s)	311, 693, 1005, 1021
AluBI	AGCT	8 cut(s)	11, 97, 146, 193, 611, 724, 863, 1185
AluI	AGCT	8 cut(s)	11, 97, 146, 193, 611, 724, 863, 1185
Alw26I	GTCTC	2 cut(s)	691, 1077
AlwI	GGATC	1 cut(s)	345
ApeKI	GCWGC	6 cut(s)	11, 193, 278, 368, 371, 1148
ApoI	RAATTY	2 cut(s)	164, 674
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	136, 628
AspS9I	GGNCC	2 cut(s)	512, 526
AsuHPI	GGTGA	3 cut(s)	398, 754, 934
AvaII	GGWCC	2 cut(s)	512, 526
BbrPI	CACGTG	1 cut(s)	1046
BbvCI	CCTCAGC	2 cut(s)	147, 189
BbvI	GCAGC	5 cut(s)	180, 265, 355, 358, 1135
BccI	CCATC	2 cut(s)	466, 710
BceAI	ACGGC	3 cut(s)	226, 291, 451
BciT130I	CCWGG	4 cut(s)	313, 695, 1007, 1023
BciVI	GTATCC	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	691, 1077
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	5 cut(s)	351, 425, 447, 608, 1287
BfmI	CTRYAG	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	6 cut(s)	12, 194, 279, 369, 372, 1149
BlsI	GCNGC	6 cut(s)	13, 195, 280, 370, 373, 1150
BmcAI	AGTACT	2 cut(s)	429, 894
Bme1390I	CCNGG	4 cut(s)	313, 695, 1007, 1023
Bme18I	GGWCC	2 cut(s)	512, 526
BmgT120I	GGNCC	2 cut(s)	512, 526
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	4 cut(s)	313, 695, 1007, 1023
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	2 cut(s)	586, 954
BmuI	ACTGGG	1 cut(s)	220
BpmI	CTGGAG	3 cut(s)	119, 334, 1101
Bpu10I	CCTNAGC	3 cut(s)	147, 189, 772
BpuEI	CTTGAG	2 cut(s)	313, 1163
Bsa29I	ATCGAT	1 cut(s)	705
BsaAI	YACGTR	1 cut(s)	1046
BsaBI	GATNNNNATC	2 cut(s)	420, 870
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	3 cut(s)	467, 918, 1005
BsaWI	WCCGGW	2 cut(s)	69, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	1162
Bse1I	ACTGG	5 cut(s)	52, 125, 226, 553, 1091
Bse3DI	GCAATG	1 cut(s)	769
Bse8I	GATNNNNATC	2 cut(s)	420, 870
BseBI	CCWGG	4 cut(s)	313, 695, 1007, 1023
BseCI	ATCGAT	1 cut(s)	705
BseDI	CCNNGG	3 cut(s)	467, 918, 1005
BseGI	GGATG	3 cut(s)	396, 477, 1219
BseJI	GATNNNNATC	2 cut(s)	420, 870
BseLI	CCNNNNNNNGG	1 cut(s)	1162
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	3 cut(s)	138, 203, 786
BseNI	ACTGG	5 cut(s)	52, 125, 226, 553, 1091
BseRI	GAGGAG	1 cut(s)	1223
BseXI	GCAGC	5 cut(s)	180, 265, 355, 358, 1135
BsgI	GTGCAG	1 cut(s)	672
Bsh1236I	CGCG	1 cut(s)	626
BshVI	ATCGAT	1 cut(s)	705
BsiSI	CCGG	2 cut(s)	70, 170
BslI	CCNNNNNNNGG	1 cut(s)	1162
BsmAI	GTCTC	2 cut(s)	691, 1077
BsmI	GAATGC	2 cut(s)	747, 967
Bso31I	GGTCTC	1 cut(s)	691
Bsp143I	GATC	3 cut(s)	337, 421, 456
BspACI	CCGC	3 cut(s)	5, 51, 624
BspCNI	CTCAG	3 cut(s)	139, 202, 785
BspDI	ATCGAT	1 cut(s)	705
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	691
BsrDI	GCAATG	1 cut(s)	769
BsrI	ACTGG	5 cut(s)	52, 125, 226, 553, 1091
BssECI	CCNNGG	3 cut(s)	467, 918, 1005
BssMI	GATC	3 cut(s)	337, 421, 456
BssT1I	CCWWGG	1 cut(s)	918
Bst2UI	CCWGG	4 cut(s)	313, 695, 1007, 1023
Bst4CI	ACNGT	6 cut(s)	432, 847, 853, 970, 1157, 1162
BstAPI	GCANNNNNTGC	1 cut(s)	768
BstBAI	YACGTR	1 cut(s)	1046
BstC8I	GCNNGC	3 cut(s)	386, 760, 769
BstDEI	CTNAG	5 cut(s)	41, 126, 147, 189, 772
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	396, 477, 1219
BstFNI	CGCG	1 cut(s)	626
BstHHI	GCGC	2 cut(s)	136, 628
BstKTI	GATC	3 cut(s)	340, 424, 459
BstMAI	GTCTC	2 cut(s)	691, 1077
BstMBI	GATC	3 cut(s)	337, 421, 456
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 764, 768
BstNI	CCWGG	4 cut(s)	313, 695, 1007, 1023
BstSCI	CCNGG	4 cut(s)	311, 693, 1005, 1021
BstSFI	CTRYAG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	5 cut(s)	180, 265, 355, 358, 1135
BstX2I	RGATCY	2 cut(s)	337, 456
BstYI	RGATCY	2 cut(s)	337, 456
Bsu15I	ATCGAT	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	705
BtgI	CCRYGG	1 cut(s)	467
BtsCI	GGATG	3 cut(s)	396, 477, 1219
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	3 cut(s)	660, 858, 1167
Cac8I	GCNNGC	3 cut(s)	386, 760, 769
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	2 cut(s)	136, 628
Cfr13I	GGNCC	2 cut(s)	512, 526
ClaI	ATCGAT	1 cut(s)	705
Csp6I	GTAC	8 cut(s)	217, 428, 710, 843, 857, 893, 1036, 1158
CviAII	CATG	5 cut(s)	824, 1039, 1075, 1103, 1110
CviQI	GTAC	8 cut(s)	217, 428, 710, 843, 857, 893, 1036, 1158
DdeI	CTNAG	5 cut(s)	41, 126, 147, 189, 772
DpnI	GATC	3 cut(s)	339, 423, 458
DpnII	GATC	3 cut(s)	337, 421, 456
DrdI	GACNNNNNNGTC	1 cut(s)	1048
DseDI	GACNNNNNNGTC	1 cut(s)	1048
Eco130I	CCWWGG	1 cut(s)	918
Eco31I	GGTCTC	1 cut(s)	691
Eco32I	GATATC	1 cut(s)	927
Eco47I	GGWCC	2 cut(s)	512, 526
Eco57I	CTGAAG	2 cut(s)	582, 614
Eco72I	CACGTG	1 cut(s)	1046
EcoRII	CCWGG	4 cut(s)	311, 693, 1005, 1021
EcoRV	GATATC	1 cut(s)	927
EcoT14I	CCWWGG	1 cut(s)	918
ErhI	CCWWGG	1 cut(s)	918
FaeI	CATG	5 cut(s)	827, 1042, 1078, 1106, 1113
FatI	CATG	5 cut(s)	823, 1038, 1074, 1102, 1109
FblI	GTMKAC	2 cut(s)	662, 1052
Fnu4HI	GCNGC	6 cut(s)	12, 194, 279, 369, 372, 1149
FokI	GGATG	3 cut(s)	383, 484, 1226
Fsp4HI	GCNGC	6 cut(s)	12, 194, 279, 369, 372, 1149
FspBI	CTAG	5 cut(s)	351, 425, 447, 608, 1287
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	2 cut(s)	135, 627
GluI	GCNGC	6 cut(s)	12, 194, 279, 369, 372, 1149
GsuI	CTGGAG	3 cut(s)	119, 334, 1101
HapII	CCGG	2 cut(s)	70, 170
HhaI	GCGC	2 cut(s)	136, 628
Hin1II	CATG	5 cut(s)	827, 1042, 1078, 1106, 1113
Hin6I	GCGC	2 cut(s)	134, 626
HinP1I	GCGC	2 cut(s)	134, 626
HindIII	AAGCTT	1 cut(s)	1183
HinfI	GANTC	5 cut(s)	24, 326, 476, 618, 785
HpaII	CCGG	2 cut(s)	70, 170
HphI	GGTGA	3 cut(s)	398, 754, 934
Hpy166II	GTNNAC	4 cut(s)	356, 663, 1053, 1165
Hpy188I	TCNGA	2 cut(s)	562, 633
Hpy188III	TCNNGA	7 cut(s)	179, 688, 727, 824, 958, 1142, 1172
Hpy8I	GTNNAC	4 cut(s)	356, 663, 1053, 1165
HpyAV	CCTTC	3 cut(s)	194, 733, 1172
HpyCH4III	ACNGT	6 cut(s)	432, 847, 853, 970, 1157, 1162
HpyCH4IV	ACGT	1 cut(s)	1045
HpyCH4V	TGCA	6 cut(s)	14, 281, 498, 599, 653, 945
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 764, 768
HpyF3I	CTNAG	5 cut(s)	41, 126, 147, 189, 772
HpySE526I	ACGT	1 cut(s)	1045
Hsp92II	CATG	5 cut(s)	827, 1042, 1078, 1106, 1113
HspAI	GCGC	2 cut(s)	134, 626
Kzo9I	GATC	3 cut(s)	337, 421, 456
LmnI	GCTCC	1 cut(s)	8
Lsp1109I	GCAGC	5 cut(s)	180, 265, 355, 358, 1135
LweI	GCATC	2 cut(s)	586, 954
MaeI	CTAG	5 cut(s)	351, 425, 447, 608, 1287
MaeII	ACGT	1 cut(s)	1045
MaeIII	GTNAC	4 cut(s)	520, 847, 1113, 1132
MalI	GATC	3 cut(s)	339, 423, 458
MboI	GATC	3 cut(s)	337, 421, 456
MboII	GAAGA	2 cut(s)	1002, 1187
MflI	RGATCY	2 cut(s)	337, 456
MluCI	AATT	4 cut(s)	164, 674, 819, 1274
MlyI	GAGTC	2 cut(s)	320, 485
MmeI	TCCRAC	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	6 cut(s)	105, 257, 272, 462, 537, 720
MspA1I	CMGCKG	2 cut(s)	146, 193
MspI	CCGG	2 cut(s)	70, 170
MspR9I	CCNGG	4 cut(s)	313, 695, 1007, 1023
Mva1269I	GAATGC	2 cut(s)	747, 967
MvaI	CCWGG	4 cut(s)	313, 695, 1007, 1023
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	3 cut(s)	11, 764, 768
NdeII	GATC	3 cut(s)	337, 421, 456
NlaIII	CATG	5 cut(s)	827, 1042, 1078, 1106, 1113
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	2 cut(s)	1113, 1132
NsbI	TGCGCA	1 cut(s)	135
PagI	TCATGA	1 cut(s)	823
PctI	GAATGC	2 cut(s)	747, 967
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	24, 618, 785
PkrI	GCNGC	6 cut(s)	13, 195, 280, 370, 373, 1150
PleI	GAGTC	2 cut(s)	320, 484
PmaCI	CACGTG	1 cut(s)	1046
PmlI	CACGTG	1 cut(s)	1046
PpsI	GAGTC	2 cut(s)	320, 484
Ppu21I	YACGTR	1 cut(s)	1046
Psp6I	CCWGG	4 cut(s)	311, 693, 1005, 1021
PspCI	CACGTG	1 cut(s)	1046
PspGI	CCWGG	4 cut(s)	311, 693, 1005, 1021
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	512, 526
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	337, 456
PvuII	CAGCTG	2 cut(s)	146, 193
RsaI	GTAC	8 cut(s)	218, 429, 711, 844, 858, 894, 1037, 1159
RsaNI	GTAC	8 cut(s)	217, 428, 710, 843, 857, 893, 1036, 1158
SaqAI	TTAA	6 cut(s)	105, 257, 272, 462, 537, 720
SatI	GCNGC	6 cut(s)	12, 194, 279, 369, 372, 1149
Sau3AI	GATC	3 cut(s)	337, 421, 456
Sau96I	GGNCC	2 cut(s)	512, 526
ScaI	AGTACT	2 cut(s)	429, 894
SchI	GAGTC	2 cut(s)	320, 485
ScrFI	CCNGG	4 cut(s)	313, 695, 1007, 1023
SfaNI	GCATC	2 cut(s)	586, 954
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	2 cut(s)	512, 526
SmlI	CTYRAG	3 cut(s)	18, 328, 1142
SmoI	CTYRAG	3 cut(s)	18, 328, 1142
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	4 cut(s)	164, 674, 819, 1274
SsiI	CCGC	3 cut(s)	5, 51, 624
SspI	AATATT	1 cut(s)	140
SspMI	CTAG	5 cut(s)	351, 425, 447, 608, 1287
StyD4I	CCNGG	4 cut(s)	311, 693, 1005, 1021
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	6 cut(s)	432, 847, 853, 970, 1157, 1162
TaiI	ACGT	1 cut(s)	1048
TaqI	TCGA	5 cut(s)	288, 420, 689, 705, 957
TasI	AATT	4 cut(s)	164, 674, 819, 1274
TatI	WGTACW	6 cut(s)	216, 427, 709, 842, 892, 1035
TfiI	GAWTC	3 cut(s)	24, 618, 785
Tru1I	TTAA	6 cut(s)	105, 257, 272, 462, 537, 720
Tru9I	TTAA	6 cut(s)	105, 257, 272, 462, 537, 720
TscAI	CASTG	3 cut(s)	660, 858, 1167
TseFI	GTSAC	2 cut(s)	1113, 1132
TseI	GCWGC	6 cut(s)	11, 193, 278, 368, 371, 1148
Tsp45I	GTSAC	2 cut(s)	1113, 1132
TspDTI	ATGAA	5 cut(s)	812, 1017, 1063, 1098, 1230
TspGWI	ACGGA	2 cut(s)	539, 1269
TspRI	CASTG	3 cut(s)	660, 858, 1167
VpaK11BI	GGWCC	2 cut(s)	512, 526
XapI	RAATTY	2 cut(s)	164, 674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1159
XmiI	GTMKAC	2 cut(s)	662, 1052
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	5 cut(s)	351, 425, 447, 608, 1287
ZrmI	AGTACT	2 cut(s)	429, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.