Rh6BG233300

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012576
Physical Location & Seq
Forward (+)
43932277 .. 43936565
4289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG233300.1

Sequence Viewer

Length: 1182 bp
ATGAGACGGTATAATGTGCATTTCGTGCAGTTTGTTCAGTTGCCGTTGGTTGATAGATTAACTTCACTTCCTTTAACGGCTGCAGTAATCGACTTTGACAATACTGATACAGCCTGGAGAAAATATGACTCAATTACTGCAAGGGAGCTCTTTAAGCAGTTTGGCTGCTCAGAAAAGCTTTATCAGAAAGTCCTAGCACCATTGCTTCAAGTGGGTCTGTTTGCACCAGCAGAACAATGTAGTGCTGCTGCTACTCTGGGCTTGCTATCCTACATCCTTGCTCACCAGAAAGATTTTGATCTAGTACTGTGTCGTGGAACAACTAGGGAAAAGATCTTTAAGCCGTGGATGGAGTCTATGACAACCAAAGGTTGCAAGTTTGAGAAAGGTCCAAGTGTAACGGACCTTTTGCTTAATGAGGAAACTGGTTGTATTTCTGAAGTAGTTTGTGGCAAAGAAATGTATAGTGCTGATGCAGTTATCCTAGCTGTTGGAATCTCCACGCTTCAGAAACTTATTGAAAATAGTGCAGTGTTGTGTATGAGGGAGGAATTTGTCAAGGTCTCGAACCTGGCTACCATCGATGTACTCTGCGTTAAGCTCTGGATTGATAGGAAGGTGAGCATTCCAAATGCAAGCAATGCTTGCTCAGGTTTTGATGATTCGTTCGGGTGGTCTTTCTTTGATTTGAATGTAATTCATGATGACCACAAAGATAGTACAGTAACAGTGGTACAAGCTGATTTTTATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTGCCAAGGTGACATCTTACCTGTCAAAGTGCATCAAGGACTTCGAGAATGCTACTGTGATAAATAAGGAGATTGGAAGATTTCCAAAATCCCTGGCTCATTTCTTTCCAGGTTCATACAAGTACATGATACGCGGGTCTACATCTTTCCCAAACTTGTTCATGGCTGGAGACTGGATTACAACCCGACATGGTTCATGGTCACAGGAGAAATCTTATGTCACGGGTCTTGAGGCTGCCAACCGTACAGTGGACTATCTTGAAGAAGGAAGCTTTGCTAAAATAATACCTGTTGAGGAGGACGAACCACACATTCAAGGACTTCGTAGCCTAAACAGAAGTTTTAATGACATCAAAGCCCAATTTCCGTTATCTAGTTATTTCCTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

393

Amino Acids

44.29

Weight (kDa)

5.88

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amino_oxidase PF01593 123 - 345 9.2e-14 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 929
AccII CGCG 1 cut(s) 924
AciI CCGC 1 cut(s) 924
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 2 cut(s) 459, 491
AfaI GTAC 7 cut(s) 306, 588, 721, 735, 771, 914, 1036
AfiI CCNNNNNNNGG 1 cut(s) 1039
AgsI TTSAA 5 cut(s) 209, 521, 691, 1052, 1106
AjnI CCWGG 4 cut(s) 113, 570, 882, 898
AluBI AGCT 6 cut(s) 148, 178, 488, 601, 740, 1062
AluI AGCT 6 cut(s) 148, 178, 488, 601, 740, 1062
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 568, 954
ApeKI GCWGC 5 cut(s) 80, 165, 245, 248, 1025
ApoI RAATTY 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 389, 403
AsuHPI GGTGA 3 cut(s) 275, 631, 811
AvaII GGWCC 2 cut(s) 389, 403
BaeI ACNNNNGTAYC 2 cut(s) 911, 944
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 5 cut(s) 67, 152, 232, 235, 1012
BccI CCATC 2 cut(s) 343, 587
BceAI ACGGC 3 cut(s) 28, 93, 328
BciT130I CCWGG 4 cut(s) 115, 572, 884, 900
BcoDI GTCTC 2 cut(s) 568, 954
BfaI CTAG 5 cut(s) 194, 302, 324, 485, 1164
BfmI CTRYAG 1 cut(s) 81
BglII AGATCT 1 cut(s) 333
BisI GCNGC 5 cut(s) 81, 166, 246, 249, 1026
BlsI GCNGC 5 cut(s) 82, 167, 247, 250, 1027
BmcAI AGTACT 2 cut(s) 306, 771
Bme1390I CCNGG 4 cut(s) 115, 572, 884, 900
Bme18I GGWCC 2 cut(s) 389, 403
BmgT120I GGNCC 2 cut(s) 389, 403
BmrFI CCNGG 4 cut(s) 115, 572, 884, 900
BmsI GCATC 2 cut(s) 463, 831
BpmI CTGGAG 2 cut(s) 136, 978
Bpu10I CCTNAGC 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 1040
Bsa29I ATCGAT 1 cut(s) 582
BsaBI GATNNNNATC 2 cut(s) 297, 747
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 3 cut(s) 344, 795, 882
Bsc4I CCNNNNNNNGG 1 cut(s) 1039
Bse1I ACTGG 2 cut(s) 430, 968
Bse3DI GCAATG 2 cut(s) 200, 646
Bse8I GATNNNNATC 2 cut(s) 297, 747
BseBI CCWGG 4 cut(s) 115, 572, 884, 900
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 3 cut(s) 344, 795, 882
BseGI GGATG 2 cut(s) 273, 354
BseJI GATNNNNATC 2 cut(s) 297, 747
BseLI CCNNNNNNNGG 1 cut(s) 1039
BseMI GCAATG 2 cut(s) 200, 646
BseMII CTCAG 2 cut(s) 183, 663
BseNI ACTGG 2 cut(s) 430, 968
BseRI GAGGAG 1 cut(s) 1100
BseXI GCAGC 5 cut(s) 67, 152, 232, 235, 1012
BsgI GTGCAG 2 cut(s) 47, 549
Bsh1236I CGCG 1 cut(s) 924
BshVI ATCGAT 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 1039
BsmAI GTCTC 2 cut(s) 568, 954
BsmI GAATGC 2 cut(s) 624, 844
Bso31I GGTCTC 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 298, 333
BspACI CCGC 1 cut(s) 924
BspCNI CTCAG 2 cut(s) 182, 662
BspDI ATCGAT 1 cut(s) 582
BspFNI CGCG 1 cut(s) 924
BspHI TCATGA 1 cut(s) 700
BspMAI CTGCAG 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 568
BsrDI GCAATG 2 cut(s) 200, 646
BsrI ACTGG 2 cut(s) 430, 968
BssECI CCNNGG 3 cut(s) 344, 795, 882
BssMI GATC 2 cut(s) 298, 333
BssT1I CCWWGG 1 cut(s) 795
Bst2UI CCWGG 4 cut(s) 115, 572, 884, 900
Bst4CI ACNGT 7 cut(s) 9, 309, 724, 730, 847, 1034, 1039
BstAPI GCANNNNNTGC 3 cut(s) 25, 641, 645
BstC8I GCNNGC 3 cut(s) 263, 637, 646
BstDEI CTNAG 2 cut(s) 169, 649
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 273, 354
BstFNI CGCG 1 cut(s) 924
BstKTI GATC 2 cut(s) 301, 336
BstMAI GTCTC 2 cut(s) 568, 954
BstMBI GATC 2 cut(s) 298, 333
BstMWI GCNNNNNNNGC 4 cut(s) 25, 154, 641, 645
BstNI CCWGG 4 cut(s) 115, 572, 884, 900
BstSCI CCNGG 4 cut(s) 113, 570, 882, 898
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 1 cut(s) 924
BstV1I GCAGC 5 cut(s) 67, 152, 232, 235, 1012
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
Bsu15I ATCGAT 1 cut(s) 582
BsuTUI ATCGAT 1 cut(s) 582
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 2 cut(s) 273, 354
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 537, 735, 1044
Cac8I GCNNGC 3 cut(s) 263, 637, 646
CciI TCATGA 1 cut(s) 700
Cfr13I GGNCC 2 cut(s) 389, 403
ClaI ATCGAT 1 cut(s) 582
Csp6I GTAC 7 cut(s) 305, 587, 720, 734, 770, 913, 1035
CviAII CATG 5 cut(s) 701, 916, 952, 980, 987
CviQI GTAC 7 cut(s) 305, 587, 720, 734, 770, 913, 1035
DdeI CTNAG 2 cut(s) 169, 649
DpnI GATC 2 cut(s) 300, 335
DpnII GATC 2 cut(s) 298, 333
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 795
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 389, 403
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 459, 491
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 4 cut(s) 113, 570, 882, 898
EcoT14I CCWWGG 1 cut(s) 795
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 795
FaeI CATG 5 cut(s) 704, 919, 955, 983, 990
FalI AAGNNNNNCTT 2 cut(s) 628, 660
FatI CATG 5 cut(s) 700, 915, 951, 979, 986
FauI CCCGC 1 cut(s) 917
FblI GTMKAC 1 cut(s) 929
Fnu4HI GCNGC 5 cut(s) 81, 166, 246, 249, 1026
FokI GGATG 2 cut(s) 260, 361
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 5 cut(s) 81, 166, 246, 249, 1026
FspBI CTAG 5 cut(s) 194, 302, 324, 485, 1164
GluI GCNGC 5 cut(s) 81, 166, 246, 249, 1026
GsuI CTGGAG 2 cut(s) 136, 978
Hin1II CATG 5 cut(s) 704, 919, 955, 983, 990
HindIII AAGCTT 2 cut(s) 176, 1060
HinfI GANTC 4 cut(s) 128, 353, 495, 662
HphI GGTGA 3 cut(s) 275, 631, 811
Hpy166II GTNNAC 2 cut(s) 930, 1042
Hpy188I TCNGA 4 cut(s) 172, 186, 439, 510
Hpy188III TCNNGA 6 cut(s) 565, 604, 701, 835, 1019, 1049
Hpy8I GTNNAC 2 cut(s) 930, 1042
HpyAV CCTTC 2 cut(s) 610, 1049
HpyCH4III ACNGT 7 cut(s) 9, 309, 724, 730, 847, 1034, 1039
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 154, 641, 645
HpyF3I CTNAG 2 cut(s) 169, 649
Hsp92II CATG 5 cut(s) 704, 919, 955, 983, 990
Kzo9I GATC 2 cut(s) 298, 333
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 5 cut(s) 67, 152, 232, 235, 1012
LweI GCATC 2 cut(s) 463, 831
MaeI CTAG 5 cut(s) 194, 302, 324, 485, 1164
MaeIII GTNAC 5 cut(s) 397, 724, 799, 990, 1009
MalI GATC 2 cut(s) 300, 335
MboI GATC 2 cut(s) 298, 333
MboII GAAGA 2 cut(s) 879, 1064
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 4 cut(s) 132, 551, 696, 1151
MlyI GAGTC 2 cut(s) 122, 362
MmeI TCCRAC 1 cut(s) 472
MnlI CCTC 6 cut(s) 412, 537, 541, 1015, 1078, 1081
MseI TTAA 7 cut(s) 59, 74, 153, 339, 414, 597, 1134
MspR9I CCNGG 4 cut(s) 115, 572, 884, 900
Mva1269I GAATGC 2 cut(s) 624, 844
MvaI CCWGG 4 cut(s) 115, 572, 884, 900
MvnI CGCG 1 cut(s) 924
MwoI GCNNNNNNNGC 4 cut(s) 25, 154, 641, 645
NdeII GATC 2 cut(s) 298, 333
NlaIII CATG 5 cut(s) 704, 919, 955, 983, 990
NmuCI GTSAC 3 cut(s) 799, 990, 1009
PagI TCATGA 1 cut(s) 700
PctI GAATGC 2 cut(s) 624, 844
PfeI GAWTC 2 cut(s) 495, 662
PkrI GCNGC 5 cut(s) 82, 167, 247, 250, 1027
PleI GAGTC 2 cut(s) 122, 361
PpsI GAGTC 2 cut(s) 122, 361
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 4 cut(s) 113, 570, 882, 898
PspGI CCWGG 4 cut(s) 113, 570, 882, 898
PspPI GGNCC 2 cut(s) 389, 403
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 7 cut(s) 306, 588, 721, 735, 771, 914, 1036
RsaNI GTAC 7 cut(s) 305, 587, 720, 734, 770, 913, 1035
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 7 cut(s) 59, 74, 153, 339, 414, 597, 1134
SatI GCNGC 5 cut(s) 81, 166, 246, 249, 1026
Sau3AI GATC 2 cut(s) 298, 333
Sau96I GGNCC 2 cut(s) 389, 403
ScaI AGTACT 2 cut(s) 306, 771
SchI GAGTC 2 cut(s) 122, 362
ScrFI CCNGG 4 cut(s) 115, 572, 884, 900
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 2 cut(s) 463, 831
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 2 cut(s) 389, 403
SmlI CTYRAG 1 cut(s) 1019
SmoI CTYRAG 1 cut(s) 1019
Sse9I AATT 4 cut(s) 132, 551, 696, 1151
SsiI CCGC 1 cut(s) 924
SspMI CTAG 5 cut(s) 194, 302, 324, 485, 1164
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 113, 570, 882, 898
StyI CCWWGG 1 cut(s) 795
TaaI ACNGT 7 cut(s) 9, 309, 724, 730, 847, 1034, 1039
TaqI TCGA 4 cut(s) 90, 566, 582, 834
TasI AATT 4 cut(s) 132, 551, 696, 1151
TatI WGTACW 5 cut(s) 304, 586, 719, 769, 912
TfiI GAWTC 2 cut(s) 495, 662
Tru1I TTAA 7 cut(s) 59, 74, 153, 339, 414, 597, 1134
Tru9I TTAA 7 cut(s) 59, 74, 153, 339, 414, 597, 1134
TscAI CASTG 3 cut(s) 537, 735, 1044
TseFI GTSAC 3 cut(s) 799, 990, 1009
TseI GCWGC 5 cut(s) 80, 165, 245, 248, 1025
Tsp45I GTSAC 3 cut(s) 799, 990, 1009
TspDTI ATGAA 4 cut(s) 689, 894, 940, 975
TspGWI ACGGA 2 cut(s) 416, 1146
TspRI CASTG 3 cut(s) 537, 735, 1044
VpaK11BI GGWCC 2 cut(s) 389, 403
XapI RAATTY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 1036
XmiI GTMKAC 1 cut(s) 929
XspI CTAG 5 cut(s) 194, 302, 324, 485, 1164
ZrmI AGTACT 2 cut(s) 306, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.