Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006752

Physical Location & Seq

Genomic Coordinates Reverse (-)

17388950 .. 17393184

Gene Structure 4235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G168700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGAGTAACCCAGATCTGGGATTCCTTTGGACTCGCTTTGTTTCTACATTTTCTCCTCAATTTAGTCTCAAAATTTTTATCAAATCTCATAATGAGAAGGTGTACTGGTTGATTATGGATAAAGAGAGTCCACGGTCCGTCTCTTTTCGCACACACCGTAGAGGCGAACGGAGTAATCTGACCTTACATACTAAAGATGTGGAAGCGGGACTTCCTCTGGGAAGGGTGTCGCAAGATAATCCCATGAAGATTGTTTGGAAGAAGGGCTTTATTCGATTGGTTCTTGTAGGTGGCATCTTGTGGATGCTACTAATTCTTCTCGCATCGTTGCTTCATGTTTGGTCCTGCCAGTCTTCTATCTCATTCTTCTCAGCTATGTGTAACAAAGATAGCAAGGTATTCTCCATGTTAGACTCTATGGGGTTCGTACCAAAACAACAATCACAACATCGCTGTCCAATTCCCCTTGCTGATGACCCTGATAAGATAGTTATTCCAAAAGGAAGAACTCCTGATGAAATTGTCAAAAACTTAACCTATGTTATGGAGGATGAAATTTTGCCTGATGGAACACAGTCATCCCCACTATTCGGAGGACATCAAAATTGGTCACAGAGAGAGGAAAGCTTTAGACTAAAATCAAACATGAAGGTGCACTGTGGTTTTATTCGAAATGGTGGTGCTGAAATGGCTCCTGCAGACATTAAATATGCCAAGAAATGTAGGTTTGTGGTTGCCTCAGGCATTTTTGATGGATATGATGTACCCCATCAACCTTCAAATTTAAGTCCTCGTTCTAAGAAGCTCTTCTGTTTTCTCATGGCGGTGGATGAGACATCTCTTAAATTTATTAAGGAAAATGTCACAGTCACAGAAGATAGTGATGGGGGGAAATGGGTTGGTATCTGGCGTCTTGTTTTGTTGAAGCATCCACCTTATGATGAGCCAAGAAGGAATGGGAAGGTCCCCAAGATATTAACCCACCGTTTGTTCCCTAAGGCACAGTACAGCATTTGGATCGATGGTAAAATGGAGCTCATAGTTGATCCATTGCTAATTTTAGAAAGATATTTATGGTGTGGGAAGCATACATTTGCAATTTCTCAGCACAAGCATCATCGCAACATTTATGAGGAGGCTGATTCAAACAAGCGGAGGAAGCGATATGCTCGACCTCTTATTGATCTACACATGAAAATTTATCGTTATGAGGGCTTGGAGCCATGGAATTCAACGAAGAAAACTATTAGTGATGTGCCCGAAGGAGCCATTATCATACGGGAACATACTGCGATGAGTAATTTGTTTAGCTGCTTGTGGTTCAATGAGGTCAACCTCTTCACACCAAGAGACCAACTAAGTTTTGGTTACGTTGTGTACAGGTTAGGGGATTTGTTTAGGTTCTTTATGTTTCCAAATTGCGAGTACAATTCACTGTTTGTGTTGCATCCGCACATAAGGGAGCATTCTTCTCGTATAGAGTGGGTAACAAATTGGAATCAGCTTAAAGGGAACGGAACCATTTCGAATAAGGGTAAAGATTGGGACCAAGCTAATGCGAACAATGGCAATTTGATAGAGAGTCGGGGGGGCTTAGGCTTGTGGACTCCTTATCCTGCGAATCTTGATTCAGTTGTCCTACCCCCTGTAGACAGAACATCAAAAGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

558

Amino Acids

64.16

Weight (kDa)

9.34

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38500
fragaria_vesca	FvH4_2g15630 FvH4_2g15630 FvH4_2g15630 FvH4_2g15630
malus_domestica	MD00G1148400.v1.1 MD05G1124800.v1.1 MD10G1127500.v1.1
prunus_persica	Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1
pyrus_communis	pycom05g11880 pycom10g10930
rosa_chinensis	RchiOBHm_Chr6g0278831
rosa_laevigata	RLG00000013191
rosa_multiflora	Rmu_sc0004380.1_g000007 Rmu_sc0024310.1_g000001 Rmu_sc0035790.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189610
rosa_rugosa	Rorug06G0119400
rosa_samantha	Rh6AG227900 Rh6BG233600 Rh6CG236000 Rh6DG227200
rosa_wichuraiana	Rw6G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1650
AciI	CCGC	4 cut(s)	206, 824, 1153, 1451
AclWI	GGATC	2 cut(s)	1025, 1040
AcsI	RAATTY	6 cut(s)	72, 555, 781, 845, 1197, 1228
AcyI	GRCGYC	1 cut(s)	910
AfaI	GTAC	6 cut(s)	104, 429, 765, 1007, 1379, 1427
AfiI	CCNNNNNNNGG	3 cut(s)	16, 17, 590
AgsI	TTSAA	5 cut(s)	780, 925, 1146, 1233, 1324
AluBI	AGCT	8 cut(s)	374, 627, 805, 1036, 1311, 1504, 1553, 1667
AluI	AGCT	8 cut(s)	374, 627, 805, 1036, 1311, 1504, 1553, 1667
Alw21I	GWGCWC	2 cut(s)	657, 1038
Alw26I	GTCTC	4 cut(s)	71, 145, 827, 1344
Alw44I	GTGCAC	1 cut(s)	653
AlwI	GGATC	2 cut(s)	1025, 1040
ApaLI	GTGCAC	1 cut(s)	653
ApeKI	GCWGC	1 cut(s)	1311
ApoI	RAATTY	6 cut(s)	72, 555, 781, 845, 1197, 1228
Asp700I	GAANNNNTTC	2 cut(s)	806, 1522
AspS9I	GGNCC	4 cut(s)	135, 342, 964, 1546
AsuII	TTCGAA	2 cut(s)	670, 1526
AvaII	GGWCC	4 cut(s)	135, 342, 964, 1546
AxyI	CCTNAGG	2 cut(s)	739, 996
BaeGI	GKGCMC	2 cut(s)	657, 1260
BanII	GRGCYC	1 cut(s)	1038
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	2 cut(s)	657, 1038
BbvI	GCAGC	1 cut(s)	1298
BccI	CCATC	5 cut(s)	560, 746, 777, 878, 1016
BcgI	CGANNNNNNTGC	4 cut(s)	1000, 1034, 1454, 1488
BcoDI	GTCTC	4 cut(s)	71, 145, 827, 1344
BfmI	CTRYAG	2 cut(s)	696, 1647
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	1 cut(s)	1312
BlsI	GCNGC	1 cut(s)	1313
Bme18I	GGWCC	4 cut(s)	135, 342, 964, 1546
BmgT120I	GGNCC	4 cut(s)	135, 342, 964, 1546
BmiI	GGNNCC	6 cut(s)	693, 966, 1221, 1267, 1519, 1547
BmsI	GCATC	6 cut(s)	294, 303, 332, 937, 1123, 1456
BpiI	GAAGAC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	1594
Bpu14I	TTCGAA	2 cut(s)	670, 1526
Bsa29I	ATCGAT	1 cut(s)	1020
BsaHI	GRCGYC	1 cut(s)	910
BsaI	GGTCTC	1 cut(s)	1344
BsaJI	CCNNGG	2 cut(s)	131, 1223
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 17, 590
Bse1I	ACTGG	2 cut(s)	110, 349
Bse21I	CCTNAGG	2 cut(s)	739, 996
Bse3DI	GCAATG	1 cut(s)	1049
BseCI	ATCGAT	1 cut(s)	1020
BseDI	CCNNGG	2 cut(s)	131, 1223
BseGI	GGATG	6 cut(s)	309, 556, 578, 835, 928, 1447
BseLI	CCNNNNNNNGG	3 cut(s)	16, 17, 590
BseMI	GCAATG	1 cut(s)	1049
BseMII	CTCAG	3 cut(s)	384, 753, 1118
BseNI	ACTGG	2 cut(s)	110, 349
BseRI	GAGGAG	2 cut(s)	45, 1148
BseSI	GKGCMC	2 cut(s)	657, 1260
BseXI	GCAGC	1 cut(s)	1298
BshVI	ATCGAT	1 cut(s)	1020
BsiHKAI	GWGCWC	2 cut(s)	657, 1038
BslFI	GGGAC	3 cut(s)	222, 950, 1559
BslI	CCNNNNNNNGG	3 cut(s)	16, 17, 590
BsmAI	GTCTC	4 cut(s)	71, 145, 827, 1344
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	3 cut(s)	222, 950, 1559
BsmI	GAATGC	1 cut(s)	1465
Bso31I	GGTCTC	1 cut(s)	1344
Bsp119I	TTCGAA	2 cut(s)	670, 1526
Bsp1286I	GDGCHC	3 cut(s)	657, 1038, 1260
Bsp1407I	TGTACA	1 cut(s)	1377
Bsp143I	GATC	4 cut(s)	13, 1017, 1045, 1183
Bsp19I	CCATGG	1 cut(s)	1223
BspACI	CCGC	4 cut(s)	206, 824, 1153, 1451
BspCNI	CTCAG	3 cut(s)	383, 752, 1117
BspDI	ATCGAT	1 cut(s)	1020
BspLI	GGNNCC	6 cut(s)	693, 966, 1221, 1267, 1519, 1547
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	2 cut(s)	1025, 1040
BspQI	GCTCTTC	1 cut(s)	812
BspT104I	TTCGAA	2 cut(s)	670, 1526
BspTNI	GGTCTC	1 cut(s)	1344
BsrDI	GCAATG	1 cut(s)	1049
BsrGI	TGTACA	1 cut(s)	1377
BsrI	ACTGG	2 cut(s)	110, 349
BssECI	CCNNGG	2 cut(s)	131, 1223
BssMI	GATC	4 cut(s)	13, 1017, 1045, 1183
BssNI	GRCGYC	1 cut(s)	910
BssT1I	CCWWGG	1 cut(s)	1223
Bst4CI	ACNGT	8 cut(s)	135, 158, 576, 659, 868, 986, 1005, 1437
Bst6I	CTCTTC	2 cut(s)	812, 1343
BstACI	GRCGYC	1 cut(s)	910
BstAUI	TGTACA	1 cut(s)	1377
BstBI	TTCGAA	2 cut(s)	670, 1526
BstC8I	GCNNGC	1 cut(s)	1669
BstDEI	CTNAG	7 cut(s)	370, 739, 798, 996, 1104, 1358, 1594
BstDSI	CCRYGG	2 cut(s)	131, 1223
BstF5I	GGATG	6 cut(s)	309, 556, 578, 835, 928, 1447
BstKTI	GATC	4 cut(s)	16, 1020, 1048, 1186
BstMAI	GTCTC	4 cut(s)	71, 145, 827, 1344
BstMBI	GATC	4 cut(s)	13, 1017, 1045, 1183
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 1159
BstSFI	CTRYAG	2 cut(s)	696, 1647
BstSLI	GKGCMC	2 cut(s)	657, 1260
BstV1I	GCAGC	1 cut(s)	1298
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu15I	ATCGAT	1 cut(s)	1020
Bsu36I	CCTNAGG	2 cut(s)	739, 996
BsuTUI	ATCGAT	1 cut(s)	1020
BtgI	CCRYGG	2 cut(s)	131, 1223
BtgZI	GCGATG	3 cut(s)	434, 1103, 1307
BtsCI	GGATG	6 cut(s)	309, 556, 578, 835, 928, 1447
BtsIMutI	CAGTG	2 cut(s)	655, 1433
Cac8I	GCNNGC	1 cut(s)	1669
Cfr13I	GGNCC	4 cut(s)	135, 342, 964, 1546
ClaI	ATCGAT	1 cut(s)	1020
CpoI	CGGWCCG	1 cut(s)	135
CseI	GACGC	1 cut(s)	899
Csp6I	GTAC	6 cut(s)	103, 428, 764, 1006, 1378, 1426
CspI	CGGWCCG	1 cut(s)	135
CviAII	CATG	7 cut(s)	244, 335, 406, 646, 820, 1192, 1224
CviQI	GTAC	6 cut(s)	103, 428, 764, 1006, 1378, 1426
DdeI	CTNAG	7 cut(s)	370, 739, 798, 996, 1104, 1358, 1594
DpnI	GATC	4 cut(s)	15, 1019, 1047, 1185
DpnII	GATC	4 cut(s)	13, 1017, 1045, 1183
Eam1104I	CTCTTC	2 cut(s)	812, 1343
EarI	CTCTTC	2 cut(s)	812, 1343
Ecl136II	GAGCTC	1 cut(s)	1036
Eco130I	CCWWGG	1 cut(s)	1223
Eco24I	GRGCYC	1 cut(s)	1038
Eco31I	GGTCTC	1 cut(s)	1344
Eco47I	GGWCC	4 cut(s)	135, 342, 964, 1546
Eco53kI	GAGCTC	1 cut(s)	1036
Eco81I	CCTNAGG	2 cut(s)	739, 996
EcoICRI	GAGCTC	1 cut(s)	1036
EcoO109I	RGGNCCY	1 cut(s)	964
EcoRI	GAATTC	1 cut(s)	1228
EcoT14I	CCWWGG	1 cut(s)	1223
EcoT38I	GRGCYC	1 cut(s)	1038
ErhI	CCWWGG	1 cut(s)	1223
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	7 cut(s)	247, 338, 409, 649, 823, 1195, 1227
FalI	AAGNNNNNCTT	6 cut(s)	195, 227, 251, 283, 791, 823
FaqI	GGGAC	3 cut(s)	222, 950, 1559
FatI	CATG	7 cut(s)	243, 334, 405, 645, 819, 1191, 1223
FauI	CCCGC	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	1650
Fnu4HI	GCNGC	1 cut(s)	1312
FokI	GGATG	6 cut(s)	316, 563, 565, 842, 915, 1434
FriOI	GRGCYC	1 cut(s)	1038
Fsp4HI	GCNGC	1 cut(s)	1312
GluI	GCNGC	1 cut(s)	1312
HgaI	GACGC	1 cut(s)	899
Hin1I	GRCGYC	1 cut(s)	910
Hin1II	CATG	7 cut(s)	247, 338, 409, 649, 823, 1195, 1227
HincII	GTYRAC	1 cut(s)	1333
HindII	GTYRAC	1 cut(s)	1333
HindIII	AAGCTT	1 cut(s)	625
Hpy166II	GTNNAC	7 cut(s)	103, 131, 655, 1333, 1378, 1605, 1651
Hpy188I	TCNGA	2 cut(s)	180, 593
Hpy188III	TCNNGA	2 cut(s)	512, 1625
Hpy8I	GTNNAC	7 cut(s)	103, 131, 655, 1333, 1378, 1605, 1651
HpyAV	CCTTC	8 cut(s)	91, 216, 256, 643, 786, 945, 955, 1256
HpyCH4III	ACNGT	8 cut(s)	135, 158, 576, 659, 868, 986, 1005, 1437
HpyCH4IV	ACGT	1 cut(s)	1371
HpyCH4V	TGCA	4 cut(s)	655, 698, 1097, 1447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 1159
HpyF3I	CTNAG	7 cut(s)	370, 739, 798, 996, 1104, 1358, 1594
HpySE526I	ACGT	1 cut(s)	1371
Hsp92I	GRCGYC	1 cut(s)	910
Hsp92II	CATG	7 cut(s)	247, 338, 409, 649, 823, 1195, 1227
Kzo9I	GATC	4 cut(s)	13, 1017, 1045, 1183
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	5 cut(s)	697, 1033, 1219, 1265, 1462
Lsp1109I	GCAGC	1 cut(s)	1298
LweI	GCATC	6 cut(s)	294, 303, 332, 937, 1123, 1456
MaeII	ACGT	1 cut(s)	1371
MaeIII	GTNAC	7 cut(s)	5, 380, 609, 862, 868, 1367, 1486
MalI	GATC	4 cut(s)	15, 1019, 1047, 1185
MboI	GATC	4 cut(s)	13, 1017, 1045, 1183
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	3 cut(s)	657, 1038, 1260
MlyI	GAGTC	5 cut(s)	25, 136, 407, 1591, 1600
MroXI	GAANNNNTTC	2 cut(s)	806, 1522
MseI	TTAA	7 cut(s)	533, 705, 785, 843, 852, 977, 1506
MslI	CAYNNNNRTG	2 cut(s)	650, 824
Mva1269I	GAATGC	1 cut(s)	1465
MwoI	GCNNNNNNNGC	2 cut(s)	689, 1159
NcoI	CCATGG	1 cut(s)	1223
NdeII	GATC	4 cut(s)	13, 1017, 1045, 1183
NlaIII	CATG	7 cut(s)	247, 338, 409, 649, 823, 1195, 1227
NlaIV	GGNNCC	6 cut(s)	693, 966, 1221, 1267, 1519, 1547
NmuCI	GTSAC	3 cut(s)	609, 862, 868
NspV	TTCGAA	2 cut(s)	670, 1526
PciSI	GCTCTTC	1 cut(s)	812
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PctI	GAATGC	1 cut(s)	1465
PdmI	GAANNNNTTC	2 cut(s)	806, 1522
PfeI	GAWTC	5 cut(s)	21, 1142, 1498, 1621, 1628
PkrI	GCNGC	1 cut(s)	1313
PleI	GAGTC	5 cut(s)	25, 135, 407, 1590, 1600
PpsI	GAGTC	5 cut(s)	25, 135, 407, 1590, 1600
PpuMI	RGGWCCY	1 cut(s)	964
Psp124BI	GAGCTC	1 cut(s)	1038
Psp5II	RGGWCCY	1 cut(s)	964
PspN4I	GGNNCC	6 cut(s)	693, 966, 1221, 1267, 1519, 1547
PspPI	GGNCC	4 cut(s)	135, 342, 964, 1546
PspPPI	RGGWCCY	1 cut(s)	964
PstI	CTGCAG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	6 cut(s)	104, 429, 765, 1007, 1379, 1427
RsaNI	GTAC	6 cut(s)	103, 428, 764, 1006, 1378, 1426
RseI	CAYNNNNRTG	2 cut(s)	650, 824
Rsr2I	CGGWCCG	1 cut(s)	135
RsrII	CGGWCCG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	1038
SapI	GCTCTTC	1 cut(s)	812
SaqAI	TTAA	7 cut(s)	533, 705, 785, 843, 852, 977, 1506
SatI	GCNGC	1 cut(s)	1312
Sau3AI	GATC	4 cut(s)	13, 1017, 1045, 1183
Sau96I	GGNCC	4 cut(s)	135, 342, 964, 1546
SchI	GAGTC	5 cut(s)	25, 136, 407, 1591, 1600
SduI	GDGCHC	3 cut(s)	657, 1038, 1260
SfaNI	GCATC	6 cut(s)	294, 303, 332, 937, 1123, 1456
SfcI	CTRYAG	2 cut(s)	696, 1647
SfuI	TTCGAA	2 cut(s)	670, 1526
SinI	GGWCC	4 cut(s)	135, 342, 964, 1546
SmiMI	CAYNNNNRTG	2 cut(s)	650, 824
SsiI	CCGC	4 cut(s)	206, 824, 1153, 1451
SstI	GAGCTC	1 cut(s)	1038
StyI	CCWWGG	1 cut(s)	1223
TaaI	ACNGT	8 cut(s)	135, 158, 576, 659, 868, 986, 1005, 1437
TaiI	ACGT	1 cut(s)	1374
TaqI	TCGA	5 cut(s)	274, 670, 1020, 1171, 1526
TatI	WGTACW	4 cut(s)	102, 1005, 1377, 1425
TfiI	GAWTC	5 cut(s)	21, 1142, 1498, 1621, 1628
Tru1I	TTAA	7 cut(s)	533, 705, 785, 843, 852, 977, 1506
Tru9I	TTAA	7 cut(s)	533, 705, 785, 843, 852, 977, 1506
TscAI	CASTG	2 cut(s)	662, 1440
TseFI	GTSAC	3 cut(s)	609, 862, 868
TseI	GCWGC	1 cut(s)	1311
Tsp45I	GTSAC	3 cut(s)	609, 862, 868
TspDTI	ATGAA	6 cut(s)	260, 323, 531, 567, 662, 1208
TspGWI	ACGGA	3 cut(s)	127, 184, 1530
TspRI	CASTG	2 cut(s)	662, 1440
VneI	GTGCAC	1 cut(s)	653
VpaK11BI	GGWCC	4 cut(s)	135, 342, 964, 1546
XapI	RAATTY	6 cut(s)	72, 555, 781, 845, 1197, 1228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1361
XmiI	GTMKAC	1 cut(s)	1650
XmnI	GAANNNNTTC	2 cut(s)	806, 1522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.