Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006752

Physical Location & Seq

Genomic Coordinates Reverse (-)

15422874 .. 15425501

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11880.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGCTACTAATTCTCCTCGCATCATTATTTCATGTTTGGTCCTGCCAGTCTTCTATCTCTTTCTTCTCAGCTATGTGTAACAAAGAGAGCAAGGTCTTCTCCATGTTAGACTCCCTGGGGTTTGTACCAAAAGGACAATCGCAACACCGCTGTCCGATTCCTGTTGTCAGTGATCCTGATAAGATAAAAATTCCAAAGGGAAGAACTCCTGATGAAATTGTCAAAAACTTAACCTATGTTTTGGAAGATGAGATTTTGCCTGGCGGAACTCAGTCATCCCCACTATTCGGAGGATATCAAAATTGGACACAGAGAGAGGAGAGTTTTAGACTAAAATCAGACATGAAGGTGCACTGTGGTTTTATTCGAAACGGTGGTGCTGAAATGGCTCCTGCAGACATCAAATATGCCAAGAAATGTAGGTTTGTGGTTGCATCAGGCATTTTTGATGGTTATGATGTACCCCATCAACCTTCAGATTTAAGTCCTCGTTCTAAGAAGCTCTTCTGTTTTCTCATGGCGGTCGATGAAACATCTCTTAATTTTATCAAGGAAAATGTCACTGTCAGAGAGGATAATGATGGGGGAAAATGGGTTGGTATCTGGCGTCTTGTTTTGTTGAAGCATCCGCCATATGATGAGCCAAGAAGGAATGGGAAGGTCCCCAAGATATTAACCCACCGCTTGTACCCTAACGCACAGTATAGCATTTGGATCGATGCTAAAATGGAGCTCATGGTTGATCCATTGCAAATTTTAGAAAGATATTTATGGCGTGGGAAGCATACATTTGCCATTTCTCAGCACAAGCACCATCGCAGTATATACGAGGAGGCTGATGCAAACAAGCGGAGGAAGCGATATGCTCGACCTCTTATTGATCTACACATGAAAATTTATCGTTATGAGGGTTTGGAGTCGTGGGATCCAACCAAGAAAACCGTTAGTGATGTACCAGAGGGTGCCATTATCATACGGGAACATACTGCGATGAGTAATTTGTTTAGCTGCTTGTGGTTCAATGAGGTCCACCTCTTCACACCAAGAGACCAACTGAGTTTTGGTTATGTTGTGTACCGGTTAGGGGGTTTGTTTAAGTTCTTTATGTTTCCGAATTGCGAGTACAATTCCCTGTTTGTGTTGCATCCACACATAAGGGAGCATTCTTCTCGTATAGAGTGGGTAACAAGTTGGAATCAGCTCAAGGGGAACGGAACTATTTCGAATAAGGGTAAAGATTGGGACCAGGCCAATGCGAAAAATGGTTTGATAGAAAGTAGGGGAGGCTTAGGCTTGTGGACTCCTTACCCTGCAAATCTTGATTCAGTTGTCCTACCCCCTGTGGCAAGAACGTCGAAAGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

456

Amino Acids

52.23

Weight (kDa)

9.16

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38500
fragaria_vesca	FvH4_2g15630 FvH4_2g15630 FvH4_2g15630 FvH4_2g15630
malus_domestica	MD00G1148400.v1.1 MD05G1124800.v1.1 MD10G1127500.v1.1
prunus_persica	Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1
pyrus_communis	pycom05g11880 pycom10g10930
rosa_chinensis	RchiOBHm_Chr6g0278831
rosa_laevigata	RLG00000013191
rosa_multiflora	Rmu_sc0004380.1_g000007 Rmu_sc0024310.1_g000001 Rmu_sc0035790.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189610
rosa_rugosa	Rorug06G0119400
rosa_samantha	Rh6AG227900 Rh6BG233600 Rh6CG236000 Rh6DG227200
rosa_wichuraiana	Rw6G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	962
AciI	CCGC	6 cut(s)	148, 264, 521, 629, 682, 850
AclWI	GGATC	5 cut(s)	167, 722, 737, 920, 933
AcsI	RAATTY	3 cut(s)	189, 753, 894
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	607
AfaI	GTAC	6 cut(s)	126, 462, 689, 954, 1076, 1124
AfiI	CCNNNNNNNGG	2 cut(s)	287, 1084
AgeI	ACCGGT	1 cut(s)	1077
AgsI	TTSAA	2 cut(s)	622, 1021
AjnI	CCWGG	3 cut(s)	114, 259, 1245
AluBI	AGCT	6 cut(s)	71, 502, 733, 1008, 1201, 1361
AluI	AGCT	6 cut(s)	71, 502, 733, 1008, 1201, 1361
Alw21I	GWGCWC	2 cut(s)	354, 735
Alw26I	GTCTC	1 cut(s)	1041
Alw44I	GTGCAC	1 cut(s)	350
AlwI	GGATC	5 cut(s)	167, 722, 737, 920, 933
AoxI	GGCC	1 cut(s)	1248
ApaLI	GTGCAC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	1008
ApoI	RAATTY	3 cut(s)	189, 753, 894
AsiGI	ACCGGT	1 cut(s)	1077
Asp700I	GAANNNNTTC	2 cut(s)	503, 1219
AspS9I	GGNCC	4 cut(s)	39, 661, 1027, 1243
AsuII	TTCGAA	2 cut(s)	367, 1223
AvaII	GGWCC	4 cut(s)	39, 661, 1027, 1243
BaeGI	GKGCMC	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	925
BanI	GGYRCC	1 cut(s)	962
BanII	GRGCYC	1 cut(s)	735
BbsI	GAAGAC	2 cut(s)	42, 88
Bbv12I	GWGCWC	2 cut(s)	354, 735
BbvI	GCAGC	1 cut(s)	995
BccI	CCATC	4 cut(s)	443, 474, 575, 822
BcgI	CGANNNNNNTGC	5 cut(s)	697, 731, 1151, 1185, 1335
BciT130I	CCWGG	3 cut(s)	116, 261, 1247
BcoDI	GTCTC	1 cut(s)	1041
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	1 cut(s)	1009
BlsI	GCNGC	1 cut(s)	1010
Bme1390I	CCNGG	3 cut(s)	116, 261, 1247
Bme18I	GGWCC	4 cut(s)	39, 661, 1027, 1243
BmgT120I	GGNCC	4 cut(s)	39, 661, 1027, 1243
BmiI	GGNNCC	5 cut(s)	390, 663, 927, 964, 1244
BmrFI	CCNGG	3 cut(s)	116, 261, 1247
BmsI	GCATC	6 cut(s)	29, 443, 634, 709, 829, 1153
BpiI	GAAGAC	2 cut(s)	42, 88
Bpu10I	CCTNAGC	1 cut(s)	1288
Bpu14I	TTCGAA	2 cut(s)	367, 1223
BpuEI	CTTGAG	1 cut(s)	1187
Bsa29I	ATCGAT	1 cut(s)	717
BsaHI	GRCGYC	1 cut(s)	607
BsaI	GGTCTC	1 cut(s)	1041
BsaJI	CCNNGG	2 cut(s)	114, 115
BsaWI	WCCGGW	1 cut(s)	1077
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 1084
Bse118I	RCCGGY	1 cut(s)	1077
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	746
BseBI	CCWGG	3 cut(s)	116, 261, 1247
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	2 cut(s)	114, 115
BseGI	GGATG	3 cut(s)	275, 625, 1144
BseLI	CCNNNNNNNGG	2 cut(s)	287, 1084
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	4 cut(s)	81, 284, 815, 1046
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	3 cut(s)	5, 332, 845
BseSI	GKGCMC	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	995
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	1250
BshNI	GGYRCC	1 cut(s)	962
BshTI	ACCGGT	1 cut(s)	1077
BshVI	ATCGAT	1 cut(s)	717
BsiEI	CGRYCG	1 cut(s)	525
BsiHKAI	GWGCWC	2 cut(s)	354, 735
BsiSI	CCGG	1 cut(s)	1078
BslFI	GGGAC	2 cut(s)	647, 1256
BslI	CCNNNNNNNGG	2 cut(s)	287, 1084
BsmAI	GTCTC	1 cut(s)	1041
BsmFI	GGGAC	2 cut(s)	647, 1256
BsmI	GAATGC	1 cut(s)	1162
BsnI	GGCC	1 cut(s)	1250
Bso31I	GGTCTC	1 cut(s)	1041
Bsp119I	TTCGAA	2 cut(s)	367, 1223
Bsp1286I	GDGCHC	2 cut(s)	354, 735
Bsp143I	GATC	5 cut(s)	172, 714, 742, 880, 925
BspACI	CCGC	6 cut(s)	148, 264, 521, 629, 682, 850
BspANI	GGCC	1 cut(s)	1250
BspCNI	CTCAG	4 cut(s)	80, 283, 814, 1047
BspDI	ATCGAT	1 cut(s)	717
BspLI	GGNNCC	5 cut(s)	390, 663, 927, 964, 1244
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	5 cut(s)	167, 722, 737, 920, 933
BspQI	GCTCTTC	1 cut(s)	509
BspT104I	TTCGAA	2 cut(s)	367, 1223
BspT107I	GGYRCC	1 cut(s)	962
BspTNI	GGTCTC	1 cut(s)	1041
BsrDI	GCAATG	1 cut(s)	746
BsrFI	RCCGGY	1 cut(s)	1077
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	1077
BssECI	CCNNGG	2 cut(s)	114, 115
BssMI	GATC	5 cut(s)	172, 714, 742, 880, 925
BssNI	GRCGYC	1 cut(s)	607
Bst2UI	CCWGG	3 cut(s)	116, 261, 1247
Bst4CI	ACNGT	5 cut(s)	356, 374, 565, 702, 943
Bst6I	CTCTTC	2 cut(s)	509, 1040
BstACI	GRCGYC	1 cut(s)	607
BstBI	TTCGAA	2 cut(s)	367, 1223
BstC8I	GCNNGC	1 cut(s)	1363
BstDEI	CTNAG	6 cut(s)	67, 270, 495, 801, 1055, 1288
BstF5I	GGATG	3 cut(s)	275, 625, 1144
BstKTI	GATC	5 cut(s)	175, 717, 745, 883, 928
BstMAI	GTCTC	1 cut(s)	1041
BstMBI	GATC	5 cut(s)	172, 714, 742, 880, 925
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 781, 856
BstNI	CCWGG	3 cut(s)	116, 261, 1247
BstSCI	CCNGG	3 cut(s)	114, 259, 1245
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	995
BstV2I	GAAGAC	2 cut(s)	42, 88
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
Bsu15I	ATCGAT	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	1250
BsuTUI	ATCGAT	1 cut(s)	717
BtgZI	GCGATG	2 cut(s)	800, 1004
BtsCI	GGATG	3 cut(s)	275, 625, 1144
BtsIMutI	CAGTG	3 cut(s)	175, 352, 561
Cac8I	GCNNGC	1 cut(s)	1363
Cfr10I	RCCGGY	1 cut(s)	1077
Cfr13I	GGNCC	4 cut(s)	39, 661, 1027, 1243
ClaI	ATCGAT	1 cut(s)	717
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	6 cut(s)	125, 461, 688, 953, 1075, 1123
CspAI	ACCGGT	1 cut(s)	1077
CviAII	CATG	6 cut(s)	32, 103, 343, 517, 736, 889
CviQI	GTAC	6 cut(s)	125, 461, 688, 953, 1075, 1123
DdeI	CTNAG	6 cut(s)	67, 270, 495, 801, 1055, 1288
DpnI	GATC	5 cut(s)	174, 716, 744, 882, 927
DpnII	GATC	5 cut(s)	172, 714, 742, 880, 925
Eam1104I	CTCTTC	2 cut(s)	509, 1040
EarI	CTCTTC	2 cut(s)	509, 1040
EciI	GGCGGA	2 cut(s)	279, 618
Ecl136II	GAGCTC	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	735
Eco31I	GGTCTC	1 cut(s)	1041
Eco32I	GATATC	1 cut(s)	296
Eco47I	GGWCC	4 cut(s)	39, 661, 1027, 1243
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	733
EcoO109I	RGGNCCY	1 cut(s)	661
EcoRII	CCWGG	3 cut(s)	114, 259, 1245
EcoRV	GATATC	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	735
FaeI	CATG	6 cut(s)	35, 106, 346, 520, 739, 892
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	2 cut(s)	647, 1256
FatI	CATG	6 cut(s)	31, 102, 342, 516, 735, 888
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	1 cut(s)	1009
FokI	GGATG	3 cut(s)	262, 612, 1131
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	1 cut(s)	1009
GluI	GCNGC	1 cut(s)	1009
HaeIII	GGCC	1 cut(s)	1250
HapII	CCGG	1 cut(s)	1078
HgaI	GACGC	1 cut(s)	596
Hin1I	GRCGYC	1 cut(s)	607
Hin1II	CATG	6 cut(s)	35, 106, 346, 520, 739, 892
HinfI	GANTC	6 cut(s)	110, 157, 917, 1195, 1300, 1322
HpaII	CCGG	1 cut(s)	1078
Hpy166II	GTNNAC	4 cut(s)	352, 1030, 1075, 1299
Hpy188I	TCNGA	6 cut(s)	156, 290, 340, 478, 569, 1113
Hpy188III	TCNNGA	3 cut(s)	176, 209, 1319
Hpy8I	GTNNAC	4 cut(s)	352, 1030, 1075, 1299
Hpy99I	CGWCG	1 cut(s)	1357
HpyAV	CCTTC	4 cut(s)	340, 483, 642, 652
HpyCH4III	ACNGT	5 cut(s)	356, 374, 565, 702, 943
HpyCH4IV	ACGT	1 cut(s)	1352
HpyCH4V	TGCA	7 cut(s)	352, 395, 434, 751, 842, 1144, 1313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 781, 856
HpyF3I	CTNAG	6 cut(s)	67, 270, 495, 801, 1055, 1288
HpySE526I	ACGT	1 cut(s)	1352
Hsp92I	GRCGYC	1 cut(s)	607
Hsp92II	CATG	6 cut(s)	35, 106, 346, 520, 739, 892
Kzo9I	GATC	5 cut(s)	172, 714, 742, 880, 925
LguI	GCTCTTC	1 cut(s)	509
LmnI	GCTCC	3 cut(s)	394, 730, 1159
Lsp1109I	GCAGC	1 cut(s)	995
LweI	GCATC	6 cut(s)	29, 443, 634, 709, 829, 1153
MaeII	ACGT	1 cut(s)	1352
MaeIII	GTNAC	3 cut(s)	77, 559, 1183
MalI	GATC	5 cut(s)	174, 716, 744, 882, 927
MboI	GATC	5 cut(s)	172, 714, 742, 880, 925
MboII	GAAGA	8 cut(s)	42, 55, 88, 213, 257, 496, 1027, 1158
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	2 cut(s)	354, 735
MlyI	GAGTC	3 cut(s)	104, 926, 1294
MmeI	TCCRAC	2 cut(s)	953, 1172
MroXI	GAANNNNTTC	2 cut(s)	503, 1219
MseI	TTAA	5 cut(s)	230, 482, 540, 674, 1095
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	1 cut(s)	1078
MspR9I	CCNGG	3 cut(s)	116, 261, 1247
Mva1269I	GAATGC	1 cut(s)	1162
MvaI	CCWGG	3 cut(s)	116, 261, 1247
MwoI	GCNNNNNNNGC	3 cut(s)	386, 781, 856
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	5 cut(s)	172, 714, 742, 880, 925
NlaIII	CATG	6 cut(s)	35, 106, 346, 520, 739, 892
NlaIV	GGNNCC	5 cut(s)	390, 663, 927, 964, 1244
NmuCI	GTSAC	1 cut(s)	559
NspV	TTCGAA	2 cut(s)	367, 1223
PasI	CCCWGGG	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	509
PctI	GAATGC	1 cut(s)	1162
PdmI	GAANNNNTTC	2 cut(s)	503, 1219
PfeI	GAWTC	3 cut(s)	157, 1195, 1322
PinAI	ACCGGT	1 cut(s)	1077
PkrI	GCNGC	1 cut(s)	1010
PleI	GAGTC	3 cut(s)	104, 925, 1294
PpsI	GAGTC	3 cut(s)	104, 925, 1294
PpuMI	RGGWCCY	1 cut(s)	661
Psp124BI	GAGCTC	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	661
Psp6I	CCWGG	3 cut(s)	114, 259, 1245
PspGI	CCWGG	3 cut(s)	114, 259, 1245
PspN4I	GGNNCC	5 cut(s)	390, 663, 927, 964, 1244
PspPI	GGNCC	4 cut(s)	39, 661, 1027, 1243
PspPPI	RGGWCCY	1 cut(s)	661
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	925
RsaI	GTAC	6 cut(s)	126, 462, 689, 954, 1076, 1124
RsaNI	GTAC	6 cut(s)	125, 461, 688, 953, 1075, 1123
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	735
SapI	GCTCTTC	1 cut(s)	509
SaqAI	TTAA	5 cut(s)	230, 482, 540, 674, 1095
SatI	GCNGC	1 cut(s)	1009
Sau3AI	GATC	5 cut(s)	172, 714, 742, 880, 925
Sau96I	GGNCC	4 cut(s)	39, 661, 1027, 1243
SchI	GAGTC	3 cut(s)	104, 926, 1294
ScrFI	CCNGG	3 cut(s)	116, 261, 1247
SduI	GDGCHC	2 cut(s)	354, 735
SfaNI	GCATC	6 cut(s)	29, 443, 634, 709, 829, 1153
SfcI	CTRYAG	1 cut(s)	393
SfuI	TTCGAA	2 cut(s)	367, 1223
SinI	GGWCC	4 cut(s)	39, 661, 1027, 1243
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	1202
SmoI	CTYRAG	1 cut(s)	1202
SsiI	CCGC	6 cut(s)	148, 264, 521, 629, 682, 850
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	114, 259, 1245
TaaI	ACNGT	5 cut(s)	356, 374, 565, 702, 943
TaiI	ACGT	1 cut(s)	1355
TaqI	TCGA	6 cut(s)	367, 525, 717, 868, 1223, 1355
TatI	WGTACW	1 cut(s)	1122
TfiI	GAWTC	3 cut(s)	157, 1195, 1322
Tru1I	TTAA	5 cut(s)	230, 482, 540, 674, 1095
Tru9I	TTAA	5 cut(s)	230, 482, 540, 674, 1095
TscAI	CASTG	3 cut(s)	175, 359, 568
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	1008
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	5 cut(s)	20, 228, 359, 543, 905
TspGWI	ACGGA	1 cut(s)	1227
TspRI	CASTG	3 cut(s)	175, 359, 568
VneI	GTGCAC	1 cut(s)	350
VpaK11BI	GGWCC	4 cut(s)	39, 661, 1027, 1243
XapI	RAATTY	3 cut(s)	189, 753, 894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1058
XmnI	GAANNNNTTC	2 cut(s)	503, 1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.