Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024310.1

Orthogroup ID

OG0006752

Physical Location & Seq

Genomic Coordinates Reverse (-)

1326 .. 4250

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024310.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

atggagaatagtagtccacggtctgtgtcttttcgcacgcaccgaagaggcgaaaggagtggtctaagcgtgcttagtaaagatgttgaaggtggagtttttccagggaaggtttccccggattctgccatgaagattgtttgcaagaggggcgttattcgattgcttcttgttggtgtcatcttgtgggtggtactaattctcctcgcaactttgttccacttgtggtcctgccactcttctatctcattcttatcagctatgtgcaacaaaaatagcacggtattggacatgttacgcaatatgggatttgtagcaaaaccacaactgcaacaccgatgtccaattcccgttgccagtgatcctgataagatagttataccagaggggagaactcccgatgaaatggtcaaaaagctaacctatgttacggaggatgaggcggtatctgacaaaactcagtcatcccctctatttggaggacatgaaagctggtcacaaagagaagagagttttagactaaaaccaaccatgaaggtgcactgtggtttcattcgaaatggtggtggtgacatgattcctgcagacattgaatatgctgagaaatgtaggtttgtggttgcatcgggcatttttgatggttatgatgtaccccatcaaccttcaaatttgagcccccgttctaaaaagctcttctgtttttttatggtggtggatgagacatctcttgaatttataagtaaaaatgttactgtcagagaggataataatggggggaaatgggttggcatttggcgtctggttttactgaagcatccaccttatgatgaaccaagaaggaatgggaaggtccccaagatcttgacccaccgtttattccctaaggcgcagtacagcatttggattgatggtaaaatggagctcatagttgatccattgcttattctggaaagatatttatggcgtgagaagaatacatttgccatttctcagcacaaacatcatcatagtatatatgaggaggcagatgcaaacaagcggaggaaacgatatgctcgacctcttattgatcttcacatgaagatttaccgatacgagggcatggagccatggagtccacagaagaaaactattagtgatgtgccagagggagctattatcatacgggagcatactgcaatgagtaacttgtttagctgcttgtggttcaatgaggtcgacctctttacaccaagggaccaactgagttttggttatgttctgtacaggttgggggatttgtttaggttctttatgtttccaaactgtgagtactattcactgtttattttgcatccacacataagggagcattcctctcgcatagagtgggtaactagttggagtcagcttaagggtaacggaaccattaaggataagggtaaggattgggaccaagctaatgcaaaaaatggtttggtagaaagtagaggaggcttagggttatggactccttatcctgcaaatcttgattcagttatcctgccgcctgtagcaagaacatcaaaagctggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

518

Amino Acids

59.32

Weight (kDa)

9.18

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38500
fragaria_vesca	FvH4_2g15630 FvH4_2g15630 FvH4_2g15630 FvH4_2g15630
malus_domestica	MD00G1148400.v1.1 MD05G1124800.v1.1 MD10G1127500.v1.1
prunus_persica	Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1
pyrus_communis	pycom05g11880 pycom10g10930
rosa_chinensis	RchiOBHm_Chr6g0278831
rosa_laevigata	RLG00000013191
rosa_multiflora	Rmu_sc0004380.1_g000007 Rmu_sc0024310.1_g000001 Rmu_sc0035790.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189610
rosa_rugosa	Rorug06G0119400
rosa_samantha	Rh6AG227900 Rh6BG233600 Rh6CG236000 Rh6DG227200
rosa_wichuraiana	Rw6G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	1218
AciI	CCGC	3 cut(s)	443, 1039, 1526
AclWI	GGATC	2 cut(s)	356, 926
AcsI	RAATTY	2 cut(s)	667, 731
AcuI	CTGAAG	1 cut(s)	830
AcyI	GRCGYC	1 cut(s)	796
AfaI	GTAC	5 cut(s)	195, 651, 893, 1265, 1313
AfiI	CCNNNNNNNGG	2 cut(s)	476, 1096
AflII	CTTAAG	1 cut(s)	1391
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	5 cut(s)	89, 593, 666, 731, 1210
AhlI	ACTAGT	1 cut(s)	1376
AjnI	CCWGG	1 cut(s)	103
Alw21I	GWGCWC	2 cut(s)	543, 924
Alw26I	GTCTC	1 cut(s)	713
Alw44I	GTGCAC	1 cut(s)	539
AlwI	GGATC	2 cut(s)	356, 926
ApaLI	GTGCAC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	1197
ApoI	RAATTY	2 cut(s)	667, 731
AspLEI	GCGC	1 cut(s)	889
AspS9I	GGNCC	4 cut(s)	228, 850, 1237, 1432
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	581
AsuII	TTCGAA	1 cut(s)	556
AvaII	GGWCC	4 cut(s)	228, 850, 1237, 1432
AxyI	CCTNAGG	1 cut(s)	882
BaeGI	GKGCMC	1 cut(s)	543
BanII	GRGCYC	2 cut(s)	677, 924
Bbv12I	GWGCWC	2 cut(s)	543, 924
BbvI	GCAGC	1 cut(s)	1184
BccI	CCATC	3 cut(s)	632, 663, 902
BcgI	CGANNNNNNTGC	2 cut(s)	1340, 1374
BciT130I	CCWGG	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	713
BcuI	ACTAGT	1 cut(s)	1376
BfaI	CTAG	1 cut(s)	1377
BfmI	CTRYAG	2 cut(s)	582, 1530
BfrI	CTTAAG	1 cut(s)	1391
BglII	AGATCT	1 cut(s)	858
BisI	GCNGC	2 cut(s)	1198, 1526
BlsI	GCNGC	2 cut(s)	1199, 1527
BmcAI	AGTACT	1 cut(s)	1313
Bme1390I	CCNGG	2 cut(s)	105, 119
Bme18I	GGWCC	4 cut(s)	228, 850, 1237, 1432
BmgT120I	GGNCC	4 cut(s)	228, 850, 1237, 1432
BmiI	GGNNCC	5 cut(s)	852, 1107, 1238, 1405, 1433
BmrFI	CCNGG	2 cut(s)	105, 119
BmsI	GCATC	4 cut(s)	632, 823, 1018, 1342
BplI	GAGNNNNNCTC	2 cut(s)	1340, 1372
Bpu10I	CCTNAGC	1 cut(s)	1477
Bpu14I	TTCGAA	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	796
BsaJI	CCNNGG	5 cut(s)	17, 104, 117, 1109, 1232
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 1096
Bse1I	ACTGG	1 cut(s)	357
Bse21I	CCTNAGG	1 cut(s)	882
Bse3DI	GCAATG	2 cut(s)	935, 1185
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	5 cut(s)	17, 104, 117, 1109, 1232
BseGI	GGATG	5 cut(s)	442, 464, 721, 814, 1333
BseLI	CCNNNNNNNGG	2 cut(s)	476, 1096
BseMI	GCAATG	2 cut(s)	935, 1185
BseMII	CTCAG	4 cut(s)	473, 591, 1004, 1235
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	3 cut(s)	194, 1034, 1485
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	1 cut(s)	1184
BsiHKAI	GWGCWC	2 cut(s)	543, 924
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	3 cut(s)	836, 1250, 1445
BslI	CCNNNNNNNGG	2 cut(s)	476, 1096
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	3 cut(s)	836, 1250, 1445
BsmI	GAATGC	1 cut(s)	1351
Bsp119I	TTCGAA	1 cut(s)	556
Bsp1286I	GDGCHC	3 cut(s)	543, 677, 924
Bsp1407I	TGTACA	1 cut(s)	1263
Bsp143I	GATC	4 cut(s)	361, 858, 931, 1069
Bsp19I	CCATGG	1 cut(s)	1109
BspACI	CCGC	3 cut(s)	443, 1039, 1526
BspCNI	CTCAG	4 cut(s)	472, 592, 1003, 1236
BspLI	GGNNCC	5 cut(s)	852, 1107, 1238, 1405, 1433
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	2 cut(s)	356, 926
BspQI	GCTCTTC	1 cut(s)	698
BspT104I	TTCGAA	1 cut(s)	556
BspTI	CTTAAG	1 cut(s)	1391
BsrDI	GCAATG	2 cut(s)	935, 1185
BsrGI	TGTACA	1 cut(s)	1263
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	5 cut(s)	17, 104, 117, 1109, 1232
BssMI	GATC	4 cut(s)	361, 858, 931, 1069
BssNI	GRCGYC	1 cut(s)	796
BssT1I	CCWWGG	2 cut(s)	1109, 1232
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	7 cut(s)	21, 283, 545, 754, 872, 1307, 1323
Bst6I	CTCTTC	4 cut(s)	40, 244, 501, 698
BstACI	GRCGYC	1 cut(s)	796
BstAFI	CTTAAG	1 cut(s)	1391
BstAUI	TGTACA	1 cut(s)	1263
BstBI	TTCGAA	1 cut(s)	556
BstC8I	GCNNGC	3 cut(s)	38, 71, 1552
BstDEI	CTNAG	8 cut(s)	65, 74, 459, 600, 882, 990, 1244, 1477
BstDSI	CCRYGG	2 cut(s)	17, 1109
BstF5I	GGATG	5 cut(s)	442, 464, 721, 814, 1333
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	4 cut(s)	364, 861, 934, 1072
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	4 cut(s)	361, 858, 931, 1069
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	103, 117
BstSFI	CTRYAG	2 cut(s)	582, 1530
BstSLI	GKGCMC	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	1184
BstX2I	RGATCY	1 cut(s)	858
BstYI	RGATCY	1 cut(s)	858
Bsu36I	CCTNAGG	1 cut(s)	882
BtgI	CCRYGG	2 cut(s)	17, 1109
BtsCI	GGATG	5 cut(s)	442, 464, 721, 814, 1333
BtsIMutI	CAGTG	3 cut(s)	364, 541, 1319
Cac8I	GCNNGC	3 cut(s)	38, 71, 1552
CfoI	GCGC	1 cut(s)	889
Cfr13I	GGNCC	4 cut(s)	228, 850, 1237, 1432
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	5 cut(s)	194, 650, 892, 1264, 1312
CviAII	CATG	8 cut(s)	130, 292, 485, 532, 574, 1078, 1102, 1110
CviQI	GTAC	5 cut(s)	194, 650, 892, 1264, 1312
DdeI	CTNAG	8 cut(s)	65, 74, 459, 600, 882, 990, 1244, 1477
DpnI	GATC	4 cut(s)	363, 860, 933, 1071
DpnII	GATC	4 cut(s)	361, 858, 931, 1069
Eam1104I	CTCTTC	4 cut(s)	40, 244, 501, 698
EarI	CTCTTC	4 cut(s)	40, 244, 501, 698
Ecl136II	GAGCTC	1 cut(s)	922
Eco130I	CCWWGG	2 cut(s)	1109, 1232
Eco24I	GRGCYC	2 cut(s)	677, 924
Eco47I	GGWCC	4 cut(s)	228, 850, 1237, 1432
Eco53kI	GAGCTC	1 cut(s)	922
Eco57I	CTGAAG	1 cut(s)	830
Eco81I	CCTNAGG	1 cut(s)	882
EcoICRI	GAGCTC	1 cut(s)	922
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	1109, 1232
EcoT38I	GRGCYC	2 cut(s)	677, 924
ErhI	CCWWGG	2 cut(s)	1109, 1232
FaeI	CATG	8 cut(s)	133, 295, 488, 535, 577, 1081, 1105, 1113
FaqI	GGGAC	3 cut(s)	836, 1250, 1445
FatI	CATG	8 cut(s)	129, 291, 484, 531, 573, 1077, 1101, 1109
FblI	GTMKAC	1 cut(s)	1218
Fnu4HI	GCNGC	2 cut(s)	1198, 1526
FokI	GGATG	5 cut(s)	449, 451, 728, 801, 1320
FriOI	GRGCYC	2 cut(s)	677, 924
Fsp4HI	GCNGC	2 cut(s)	1198, 1526
FspBI	CTAG	1 cut(s)	1377
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	2 cut(s)	1198, 1526
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	785
HhaI	GCGC	1 cut(s)	889
Hin1I	GRCGYC	1 cut(s)	796
Hin1II	CATG	8 cut(s)	133, 295, 488, 535, 577, 1081, 1105, 1113
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HincII	GTYRAC	1 cut(s)	1219
HindII	GTYRAC	1 cut(s)	1219
HinfI	GANTC	6 cut(s)	122, 577, 1114, 1384, 1489, 1511
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	4 cut(s)	17, 541, 1118, 1219
Hpy188I	TCNGA	2 cut(s)	451, 758
Hpy188III	TCNNGA	6 cut(s)	365, 398, 728, 862, 947, 1508
Hpy8I	GTNNAC	4 cut(s)	17, 541, 1118, 1219
HpyAV	CCTTC	6 cut(s)	83, 103, 529, 672, 831, 841
HpyCH4III	ACNGT	7 cut(s)	21, 283, 545, 754, 872, 1307, 1323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	8 cut(s)	65, 74, 459, 600, 882, 990, 1244, 1477
Hsp92I	GRCGYC	1 cut(s)	796
Hsp92II	CATG	8 cut(s)	133, 295, 488, 535, 577, 1081, 1105, 1113
HspAI	GCGC	1 cut(s)	887
Kzo9I	GATC	4 cut(s)	361, 858, 931, 1069
LguI	GCTCTTC	1 cut(s)	698
LmnI	GCTCC	5 cut(s)	919, 1105, 1151, 1168, 1348
Lsp1109I	GCAGC	1 cut(s)	1184
LweI	GCATC	4 cut(s)	632, 823, 1018, 1342
MaeI	CTAG	1 cut(s)	1377
MaeIII	GTNAC	8 cut(s)	294, 427, 495, 569, 748, 1184, 1372, 1397
MalI	GATC	4 cut(s)	363, 860, 933, 1071
MboI	GATC	4 cut(s)	361, 858, 931, 1069
MboII	GAAGA	9 cut(s)	57, 145, 231, 518, 685, 982, 1064, 1093, 1135
MflI	RGATCY	1 cut(s)	858
MhlI	GDGCHC	3 cut(s)	543, 677, 924
MluCI	AATT	4 cut(s)	198, 345, 667, 731
MlyI	GAGTC	3 cut(s)	1123, 1393, 1483
MmeI	TCCRAC	1 cut(s)	1361
MseI	TTAA	2 cut(s)	1392, 1410
MslI	CAYNNNNRTG	1 cut(s)	536
MspCI	CTTAAG	1 cut(s)	1391
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	105, 119
Mva1269I	GAATGC	1 cut(s)	1351
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	1109
NdeII	GATC	4 cut(s)	361, 858, 931, 1069
NlaIII	CATG	8 cut(s)	133, 295, 488, 535, 577, 1081, 1105, 1113
NlaIV	GGNNCC	5 cut(s)	852, 1107, 1238, 1405, 1433
NmuCI	GTSAC	2 cut(s)	495, 569
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	556
PciI	ACATGT	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	698
PcsI	WCGNNNNNNNCGW	2 cut(s)	40, 1054
PctI	GAATGC	1 cut(s)	1351
PfeI	GAWTC	3 cut(s)	122, 577, 1511
PkrI	GCNGC	2 cut(s)	1199, 1527
PleI	GAGTC	3 cut(s)	1122, 1392, 1483
PpsI	GAGTC	3 cut(s)	1122, 1392, 1483
PpuMI	RGGWCCY	1 cut(s)	850
PscI	ACATGT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	924
Psp5II	RGGWCCY	1 cut(s)	850
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	5 cut(s)	852, 1107, 1238, 1405, 1433
PspPI	GGNCC	4 cut(s)	228, 850, 1237, 1432
PspPPI	RGGWCCY	1 cut(s)	850
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	858
RsaI	GTAC	5 cut(s)	195, 651, 893, 1265, 1313
RsaNI	GTAC	5 cut(s)	194, 650, 892, 1264, 1312
RseI	CAYNNNNRTG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	924
SalI	GTCGAC	1 cut(s)	1217
SapI	GCTCTTC	1 cut(s)	698
SaqAI	TTAA	2 cut(s)	1392, 1410
SatI	GCNGC	2 cut(s)	1198, 1526
Sau3AI	GATC	4 cut(s)	361, 858, 931, 1069
Sau96I	GGNCC	4 cut(s)	228, 850, 1237, 1432
ScaI	AGTACT	1 cut(s)	1313
SchI	GAGTC	3 cut(s)	1123, 1393, 1483
ScrFI	CCNGG	2 cut(s)	105, 119
SduI	GDGCHC	3 cut(s)	543, 677, 924
SfaNI	GCATC	4 cut(s)	632, 823, 1018, 1342
SfcI	CTRYAG	2 cut(s)	582, 1530
SfuI	TTCGAA	1 cut(s)	556
SinI	GGWCC	4 cut(s)	228, 850, 1237, 1432
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	1391
SmoI	CTYRAG	1 cut(s)	1391
SpeI	ACTAGT	1 cut(s)	1376
Sse9I	AATT	4 cut(s)	198, 345, 667, 731
SsiI	CCGC	3 cut(s)	443, 1039, 1526
SspMI	CTAG	1 cut(s)	1377
SstI	GAGCTC	1 cut(s)	924
StyD4I	CCNGG	2 cut(s)	103, 117
StyI	CCWWGG	2 cut(s)	1109, 1232
TaaI	ACNGT	7 cut(s)	21, 283, 545, 754, 872, 1307, 1323
TaqI	TCGA	4 cut(s)	160, 556, 1057, 1218
TasI	AATT	4 cut(s)	198, 345, 667, 731
TatI	WGTACW	3 cut(s)	891, 1263, 1311
TauI	GCSGC	1 cut(s)	1528
TfiI	GAWTC	3 cut(s)	122, 577, 1511
Tru1I	TTAA	2 cut(s)	1392, 1410
Tru9I	TTAA	2 cut(s)	1392, 1410
TscAI	CASTG	3 cut(s)	364, 548, 1326
TseFI	GTSAC	2 cut(s)	495, 569
TseI	GCWGC	1 cut(s)	1197
Tsp45I	GTSAC	2 cut(s)	495, 569
TspDTI	ATGAA	7 cut(s)	146, 417, 501, 541, 548, 843, 1094
TspGWI	ACGGA	2 cut(s)	446, 1416
TspRI	CASTG	3 cut(s)	364, 548, 1326
Vha464I	CTTAAG	1 cut(s)	1391
VneI	GTGCAC	1 cut(s)	539
VpaK11BI	GGWCC	4 cut(s)	228, 850, 1237, 1432
XapI	RAATTY	2 cut(s)	667, 731
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1247
XmiI	GTMKAC	1 cut(s)	1218
XspI	CTAG	1 cut(s)	1377
ZrmI	AGTACT	1 cut(s)	1313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.