Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006752

Physical Location & Seq

Genomic Coordinates Forward (+)

29387120 .. 29390018

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGGAGAATAGCAGTCCACGGTCTGTGTCTTTTCGCACGCACCGAAGAGGCGAAAGGAGTGGTCTAAGCGTGCTTAGTAAAGATGTTGAAGGTGGAGTTTTTCCAGGGAAGGTCGCCCCAGATTCTGCCATGAAGATTGTTTGCAAGAAAGGCGTTATTCGATTGCTTCTTGTTGGTGTCATCTTGTGGGTGGTACTAATTCTCCTCGCAACTTTGTTCCATGTTTGGTCCTGCCACTCTTCTATCTCATTCTTATCAGCTATGTGCAACAAAAATAGCACGGTATTGGACATGTTACGCAATATGGGATTTGTAGCAAAACCACAACTGCAACACCGATGTCCAATTCCCGTTGCCAATGATCCTGATAAGATAGTTATACCAGAGGGGAGAACTCCCGATGAAATCATCAAAAAGCTAACCTATGTTATGGAGGATGAGACGGTATCTGACAAGACTCATTCATCCCCACTATTTGGAGGACATGAAAGCTGGTCACAAAGAGAAAAGAGTTTTAGACTAAAACCAACCATGAAGGTGCACTGTGGTTTCATTCGAAATGGTGGTGGTGACATGATTCCTGCAGACATTGAATATGCTGAGAAATGTAGGTTTGTGGTTGCATCGGGCATTTTTGATGGTTATGATGTACCCCATCAACCTTCAAATTTGAGCCCCGTTCTAAAAGCTCTTCTGTTTTTTCATGGTGGTGGACGAGACATCTCTTCAATTTATAAAAGGAATGGGAAGGTCCCCAAGATCTTGACCCACCGTTTATTCCCTAAGGCGCAGTACAGCATTTGGATTGATGGTAAAATGGAGCTCATAGTTGATCCATTGCTTATTCTGGAAAGATATTTATGGCGTGAGAAGAATACATTTGCCATTTCTCAGCACAAACATCATCACAGTATATATGAGGAGGCAGATGCAAACAAGCGGAGGAAACGATATGCTCGACCTCTTATTGATCTTCACATGAAAATTTACCGATATGAGGGCATGGAGCCATGGAGTCCGCAGAAGAAAACTATTAGTGGTAAGAAGGCAGACAGTATATTTGAGTCATGTAAATTGTTTATTGATGGAAAGTTATTAAATGCAGATGTGCCAGAGGGAGCTATTATCATACGGGAGCACACTGCAATGAGTAACTTGTTTAGCTGCTTGTGGTTCAATGAAGTCGACCTCTTTACACCAAGGGACCAACTGAGTTTTGGTTATGTTCTGTACAGGTTAGGGGAATCGTTTAGGTTCTTTATGTTTCCAAACTGTGAGTACTATTCACTGTTTATTTTGCATCCACACATAAGGGAGCATTCCTCTCGCATAGAGTGGGTAACTAGTTGGAGTCAGCTTAAGGGTAACGGAACCATTAAGGATAAGGGTAAGGATTGGGACCAAGCTAATGCAAAAAATGGTTTGGTAGAGAGTAGGGGAGGCTTAGGGTTATGGACTCCTTATCCTGCAAATCTTGATTCAGTTATCCTGCCGCCTGTAGCAAGAACATCAAAAGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

507

Amino Acids

57.65

Weight (kDa)

9.31

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOD1_MUCI70	PF04765	140 - 232	1.7e-23	TOD1/MUCI70, glycosyltransferase-like domain
TOD1_MUCI70	PF04765	246 - 436	1.8e-76	TOD1/MUCI70, glycosyltransferase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38500
fragaria_vesca	FvH4_2g15630 FvH4_2g15630 FvH4_2g15630 FvH4_2g15630
malus_domestica	MD00G1148400.v1.1 MD05G1124800.v1.1 MD10G1127500.v1.1
prunus_persica	Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1 Prupe.8G168700_v2.0.a1
pyrus_communis	pycom05g11880 pycom10g10930
rosa_chinensis	RchiOBHm_Chr6g0278831
rosa_laevigata	RLG00000013191
rosa_multiflora	Rmu_sc0004380.1_g000007 Rmu_sc0024310.1_g000001 Rmu_sc0035790.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189610
rosa_rugosa	Rorug06G0119400
rosa_samantha	Rh6AG227900 Rh6BG233600 Rh6CG236000 Rh6DG227200
rosa_wichuraiana	Rw6G020000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
AccB7I	CCANNNNNTGG	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	1185
AciI	CCGC	3 cut(s)	940, 1019, 1493
AclWI	GGATC	2 cut(s)	356, 827
AcsI	RAATTY	2 cut(s)	667, 984
AfaI	GTAC	5 cut(s)	195, 651, 794, 1232, 1280
AfiI	CCNNNNNNNGG	2 cut(s)	476, 997
AflII	CTTAAG	1 cut(s)	1358
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	5 cut(s)	89, 593, 666, 729, 1177
AhlI	ACTAGT	1 cut(s)	1343
AjnI	CCWGG	1 cut(s)	103
Alw21I	GWGCWC	3 cut(s)	543, 825, 1140
Alw26I	GTCTC	2 cut(s)	434, 711
Alw44I	GTGCAC	1 cut(s)	539
AlwI	GGATC	2 cut(s)	356, 827
AlwNI	CAGNNNCTG	1 cut(s)	125
ApaLI	GTGCAC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	1164
ApoI	RAATTY	2 cut(s)	667, 984
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	4 cut(s)	228, 751, 1204, 1399
AsuHPI	GGTGA	1 cut(s)	581
AsuII	TTCGAA	1 cut(s)	556
AvaII	GGWCC	4 cut(s)	228, 751, 1204, 1399
AxyI	CCTNAGG	1 cut(s)	783
BaeGI	GKGCMC	1 cut(s)	543
BanII	GRGCYC	2 cut(s)	677, 825
Bbv12I	GWGCWC	3 cut(s)	543, 825, 1140
BbvI	GCAGC	1 cut(s)	1151
BccI	CCATC	4 cut(s)	632, 663, 803, 1079
BcgI	CGANNNNNNTGC	2 cut(s)	1307, 1341
BciT130I	CCWGG	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	434, 711
BcuI	ACTAGT	1 cut(s)	1343
BfaI	CTAG	1 cut(s)	1344
BfmI	CTRYAG	2 cut(s)	582, 1497
BfrI	CTTAAG	1 cut(s)	1358
BglII	AGATCT	1 cut(s)	759
BisI	GCNGC	2 cut(s)	1165, 1493
BlsI	GCNGC	2 cut(s)	1166, 1494
BmcAI	AGTACT	1 cut(s)	1280
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	4 cut(s)	228, 751, 1204, 1399
BmgT120I	GGNCC	4 cut(s)	228, 751, 1204, 1399
BmiI	GGNNCC	5 cut(s)	753, 1008, 1205, 1372, 1400
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	3 cut(s)	632, 919, 1309
BplI	GAGNNNNNCTC	2 cut(s)	1307, 1339
Bpu10I	CCTNAGC	1 cut(s)	1444
Bpu14I	TTCGAA	1 cut(s)	556
BsaJI	CCNNGG	4 cut(s)	17, 104, 1010, 1199
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 997
Bse21I	CCTNAGG	1 cut(s)	783
Bse3DI	GCAATG	2 cut(s)	836, 1152
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	4 cut(s)	17, 104, 1010, 1199
BseGI	GGATG	3 cut(s)	442, 464, 1300
BseLI	CCNNNNNNNGG	2 cut(s)	476, 997
BseMI	GCAATG	2 cut(s)	836, 1152
BseMII	CTCAG	3 cut(s)	591, 905, 1202
BseRI	GAGGAG	2 cut(s)	194, 935
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	1 cut(s)	1151
BsiHKAI	GWGCWC	3 cut(s)	543, 825, 1140
BslFI	GGGAC	3 cut(s)	737, 1217, 1412
BslI	CCNNNNNNNGG	2 cut(s)	476, 997
BsmAI	GTCTC	2 cut(s)	434, 711
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	3 cut(s)	737, 1217, 1412
BsmI	GAATGC	1 cut(s)	1318
Bsp119I	TTCGAA	1 cut(s)	556
Bsp1286I	GDGCHC	4 cut(s)	543, 677, 825, 1140
Bsp1407I	TGTACA	1 cut(s)	1230
Bsp143I	GATC	4 cut(s)	361, 759, 832, 970
Bsp19I	CCATGG	1 cut(s)	1010
BspACI	CCGC	3 cut(s)	940, 1019, 1493
BspCNI	CTCAG	3 cut(s)	592, 904, 1203
BspLI	GGNNCC	5 cut(s)	753, 1008, 1205, 1372, 1400
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	2 cut(s)	356, 827
BspQI	GCTCTTC	1 cut(s)	696
BspT104I	TTCGAA	1 cut(s)	556
BspTI	CTTAAG	1 cut(s)	1358
BsrDI	GCAATG	2 cut(s)	836, 1152
BsrGI	TGTACA	1 cut(s)	1230
BssECI	CCNNGG	4 cut(s)	17, 104, 1010, 1199
BssMI	GATC	4 cut(s)	361, 759, 832, 970
BssT1I	CCWWGG	2 cut(s)	1010, 1199
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	9 cut(s)	21, 283, 445, 545, 773, 911, 1055, 1274, 1290
Bst6I	CTCTTC	4 cut(s)	40, 244, 696, 730
BstAFI	CTTAAG	1 cut(s)	1358
BstAUI	TGTACA	1 cut(s)	1230
BstBI	TTCGAA	1 cut(s)	556
BstC8I	GCNNGC	3 cut(s)	38, 71, 1519
BstDEI	CTNAG	7 cut(s)	65, 74, 600, 783, 891, 1211, 1444
BstDSI	CCRYGG	2 cut(s)	17, 1010
BstF5I	GGATG	3 cut(s)	442, 464, 1300
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	4 cut(s)	364, 762, 835, 973
BstMAI	GTCTC	2 cut(s)	434, 711
BstMBI	GATC	4 cut(s)	361, 759, 832, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	2 cut(s)	582, 1497
BstSLI	GKGCMC	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	1151
BstX2I	RGATCY	1 cut(s)	759
BstYI	RGATCY	1 cut(s)	759
Bsu36I	CCTNAGG	1 cut(s)	783
BtgI	CCRYGG	2 cut(s)	17, 1010
BtsCI	GGATG	3 cut(s)	442, 464, 1300
BtsI	GCAGTG	1 cut(s)	1140
BtsIMutI	CAGTG	3 cut(s)	541, 1140, 1286
Cac8I	GCNNGC	3 cut(s)	38, 71, 1519
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	1 cut(s)	790
Cfr13I	GGNCC	4 cut(s)	228, 751, 1204, 1399
Csp6I	GTAC	5 cut(s)	194, 650, 793, 1231, 1279
CviQI	GTAC	5 cut(s)	194, 650, 793, 1231, 1279
DdeI	CTNAG	7 cut(s)	65, 74, 600, 783, 891, 1211, 1444
DpnI	GATC	4 cut(s)	363, 761, 834, 972
DpnII	GATC	4 cut(s)	361, 759, 832, 970
Eam1104I	CTCTTC	4 cut(s)	40, 244, 696, 730
EarI	CTCTTC	4 cut(s)	40, 244, 696, 730
Ecl136II	GAGCTC	1 cut(s)	823
Eco130I	CCWWGG	2 cut(s)	1010, 1199
Eco24I	GRGCYC	2 cut(s)	677, 825
Eco47I	GGWCC	4 cut(s)	228, 751, 1204, 1399
Eco53kI	GAGCTC	1 cut(s)	823
Eco81I	CCTNAGG	1 cut(s)	783
EcoICRI	GAGCTC	1 cut(s)	823
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	1010, 1199
EcoT38I	GRGCYC	2 cut(s)	677, 825
ErhI	CCWWGG	2 cut(s)	1010, 1199
Esp3I	CGTCTC	1 cut(s)	434
FaqI	GGGAC	3 cut(s)	737, 1217, 1412
FblI	GTMKAC	1 cut(s)	1185
Fnu4HI	GCNGC	2 cut(s)	1165, 1493
FokI	GGATG	3 cut(s)	449, 451, 1287
FriOI	GRGCYC	2 cut(s)	677, 825
Fsp4HI	GCNGC	2 cut(s)	1165, 1493
FspBI	CTAG	1 cut(s)	1344
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	2 cut(s)	1165, 1493
HhaI	GCGC	1 cut(s)	790
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HincII	GTYRAC	1 cut(s)	1186
HindII	GTYRAC	1 cut(s)	1186
HinfI	GANTC	9 cut(s)	122, 457, 577, 1015, 1064, 1244, 1351, 1456, 1478
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	4 cut(s)	17, 541, 713, 1186
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	5 cut(s)	365, 398, 763, 848, 1475
Hpy8I	GTNNAC	4 cut(s)	17, 541, 713, 1186
HpyAV	CCTTC	6 cut(s)	83, 103, 529, 672, 742, 1039
HpyCH4III	ACNGT	9 cut(s)	21, 283, 445, 545, 773, 911, 1055, 1274, 1290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	7 cut(s)	65, 74, 600, 783, 891, 1211, 1444
HspAI	GCGC	1 cut(s)	788
Kzo9I	GATC	4 cut(s)	361, 759, 832, 970
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	5 cut(s)	820, 1006, 1118, 1135, 1315
Lsp1109I	GCAGC	1 cut(s)	1151
LweI	GCATC	3 cut(s)	632, 919, 1309
MaeI	CTAG	1 cut(s)	1344
MaeIII	GTNAC	6 cut(s)	294, 495, 569, 1151, 1339, 1364
MalI	GATC	4 cut(s)	363, 761, 834, 972
MboI	GATC	4 cut(s)	361, 759, 832, 970
MboII	GAAGA	8 cut(s)	57, 145, 231, 683, 717, 883, 965, 1036
MflI	RGATCY	1 cut(s)	759
MhlI	GDGCHC	4 cut(s)	543, 677, 825, 1140
MluCI	AATT	6 cut(s)	198, 345, 667, 729, 984, 1073
MlyI	GAGTC	5 cut(s)	451, 1024, 1073, 1360, 1450
MmeI	TCCRAC	1 cut(s)	1328
MseI	TTAA	3 cut(s)	1097, 1359, 1377
MslI	CAYNNNNRTG	3 cut(s)	536, 708, 1145
MspCI	CTTAAG	1 cut(s)	1358
MspR9I	CCNGG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	1318
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	1010
NdeII	GATC	4 cut(s)	361, 759, 832, 970
NlaIV	GGNNCC	5 cut(s)	753, 1008, 1205, 1372, 1400
NmuCI	GTSAC	2 cut(s)	495, 569
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	556
PciI	ACATGT	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	2 cut(s)	40, 955
PctI	GAATGC	1 cut(s)	1318
PfeI	GAWTC	4 cut(s)	122, 577, 1244, 1478
PflMI	CCANNNNNTGG	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	1166, 1494
PleI	GAGTC	5 cut(s)	451, 1023, 1072, 1359, 1450
PpsI	GAGTC	5 cut(s)	451, 1023, 1072, 1359, 1450
PpuMI	RGGWCCY	1 cut(s)	751
PscI	ACATGT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	735
Psp124BI	GAGCTC	1 cut(s)	825
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	5 cut(s)	753, 1008, 1205, 1372, 1400
PspPI	GGNCC	4 cut(s)	228, 751, 1204, 1399
PspPPI	RGGWCCY	1 cut(s)	751
PstI	CTGCAG	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	759
RsaI	GTAC	5 cut(s)	195, 651, 794, 1232, 1280
RsaNI	GTAC	5 cut(s)	194, 650, 793, 1231, 1279
RseI	CAYNNNNRTG	3 cut(s)	536, 708, 1145
SacI	GAGCTC	1 cut(s)	825
SalI	GTCGAC	1 cut(s)	1184
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	3 cut(s)	1097, 1359, 1377
SatI	GCNGC	2 cut(s)	1165, 1493
Sau3AI	GATC	4 cut(s)	361, 759, 832, 970
Sau96I	GGNCC	4 cut(s)	228, 751, 1204, 1399
ScaI	AGTACT	1 cut(s)	1280
SchI	GAGTC	5 cut(s)	451, 1024, 1073, 1360, 1450
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	4 cut(s)	543, 677, 825, 1140
SfaNI	GCATC	3 cut(s)	632, 919, 1309
SfcI	CTRYAG	2 cut(s)	582, 1497
SfuI	TTCGAA	1 cut(s)	556
SinI	GGWCC	4 cut(s)	228, 751, 1204, 1399
SmiMI	CAYNNNNRTG	3 cut(s)	536, 708, 1145
SmlI	CTYRAG	1 cut(s)	1358
SmoI	CTYRAG	1 cut(s)	1358
SpeI	ACTAGT	1 cut(s)	1343
Sse9I	AATT	6 cut(s)	198, 345, 667, 729, 984, 1073
SsiI	CCGC	3 cut(s)	940, 1019, 1493
SspMI	CTAG	1 cut(s)	1344
SstI	GAGCTC	1 cut(s)	825
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	2 cut(s)	1010, 1199
TaaI	ACNGT	9 cut(s)	21, 283, 445, 545, 773, 911, 1055, 1274, 1290
TaqI	TCGA	4 cut(s)	160, 556, 958, 1185
TasI	AATT	6 cut(s)	198, 345, 667, 729, 984, 1073
TatI	WGTACW	3 cut(s)	792, 1230, 1278
TauI	GCSGC	1 cut(s)	1495
TfiI	GAWTC	4 cut(s)	122, 577, 1244, 1478
Tru1I	TTAA	3 cut(s)	1097, 1359, 1377
Tru9I	TTAA	3 cut(s)	1097, 1359, 1377
TscAI	CASTG	3 cut(s)	548, 1147, 1293
TseFI	GTSAC	2 cut(s)	495, 569
TseI	GCWGC	1 cut(s)	1164
Tsp45I	GTSAC	2 cut(s)	495, 569
TspDTI	ATGAA	9 cut(s)	146, 417, 453, 501, 541, 548, 692, 995, 1194
TspGWI	ACGGA	1 cut(s)	1383
TspRI	CASTG	3 cut(s)	548, 1147, 1293
Van91I	CCANNNNNTGG	1 cut(s)	476
Vha464I	CTTAAG	1 cut(s)	1358
VneI	GTGCAC	1 cut(s)	539
VpaK11BI	GGWCC	4 cut(s)	228, 751, 1204, 1399
XapI	RAATTY	2 cut(s)	667, 984
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1214
XmiI	GTMKAC	1 cut(s)	1185
XspI	CTAG	1 cut(s)	1344
ZrmI	AGTACT	1 cut(s)	1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.