Prupe.8G190400_v2.0.a1

At5g48480

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011320
Physical Location & Seq
Forward (+)
18550927 .. 18552295
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G190400.1

Sequence Viewer

Length: 507 bp
ATGGCACAGCAAGACGTCCAGAACGGAGAAGGAGAGAAGATTGCGCCAGCTGTTGAGATCAAGGCTGTGCTGACTCAGCTGGTGGTTCCCAAGGCCGACGACGCTGTTAAGTTCTACAAGGCTGCTTTCGGTGCTGTGGAGCTCGAGCGCTCAACTCACCCCAAGCGTAAGGCGGAGCAAGAGCGCCCGTTTATCCTCTCTGCTCAGCTCAAACTCGGCTCCTCCACATTTCTCGTCTCTGACAACACTGAAGACTCCGGCGAGCCCGTGAATGTTGTGGGTTCTGGTGCCATTGCTCTCTGGCTTGAGACGCCTGACATCGGAGCTGCTGTAGCCAAGGCGGTGCTGGCCGGAGCTGTCTCTGAGGGAGAGATAACAACTGGCGTTTTCTCTGACCCGGACCAGCCTGTGGGGAAGGTCAGGGACCCTTTCGGCTTTCTCTGGTTCTTCACCAGCCCGGTTGCCAAGAAGGCCGCAGCTGAGTCGGAAGCTCCCATAACCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3-dmu-9_3-mt Glyoxalase

Protein Analysis

169

Amino Acids

17.7

Weight (kDa)

4.77

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48480
fragaria_vesca FvH4_2g17810
malus_domestica MD05G1159600.v1.1 MD10G1152100.v1.1
prunus_persica Prupe.8G190400_v2.0.a1
pyrus_communis pycom05g15120 pycom10g13110
rosa_chinensis RchiOBHm_Chr6g0282841
rosa_laevigata RLG00000012864 RLG00000021743
rosa_multiflora Rmu_sc0006070.1_g000011
rosa_roxburghii Rroxscaffold_7G00185960
rosa_rugosa Rorug02G0530700 Rorug06G0149900
rosa_samantha Rh2BG610300 Rh6AG263200 Rh6BG266100 Rh6CG265300 Rh6DG257900
rosa_wichuraiana Rw6G022720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 409
AciI CCGC 3 cut(s) 173, 341, 474
AcoI YGGCCR 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 270
AcyI GRCGYC 2 cut(s) 15, 311
AfeI AGCGCT 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 320, 409
AluBI AGCT 8 cut(s) 50, 79, 142, 208, 326, 356, 479, 491
AluI AGCT 8 cut(s) 50, 79, 142, 208, 326, 356, 479, 491
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 241, 302, 364
Ama87I CYCGRG 1 cut(s) 143
Aor51HI AGCGCT 1 cut(s) 149
AoxI GGCC 3 cut(s) 93, 348, 471
ApeKI GCWGC 3 cut(s) 122, 326, 476
AspLEI GCGC 3 cut(s) 46, 150, 186
AspS9I GGNCC 2 cut(s) 400, 424
AsuC2I CCSGG 2 cut(s) 398, 458
AsuHPI GGTGA 2 cut(s) 149, 442
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 2 cut(s) 400, 424
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 2 cut(s) 144, 267
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 3 cut(s) 109, 313, 488
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BcnI CCSGG 2 cut(s) 398, 458
BcoDI GTCTC 3 cut(s) 241, 302, 364
BfmI CTRYAG 1 cut(s) 330
BfoI RGCGCY 2 cut(s) 151, 187
BglI GCCNNNNNGGC 1 cut(s) 470
BisI GCNGC 4 cut(s) 123, 327, 474, 477
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 4 cut(s) 124, 328, 475, 478
Bme1390I CCNGG 2 cut(s) 398, 458
Bme18I GGWCC 2 cut(s) 400, 424
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 400, 424
BmiI GGNNCC 5 cut(s) 87, 220, 289, 425, 426
BmrFI CCNGG 2 cut(s) 398, 458
BpiI GAAGAC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 398, 458
BsaHI GRCGYC 2 cut(s) 15, 311
BsaJI CCNNGG 2 cut(s) 90, 336
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 409
Bse1I ACTGG 1 cut(s) 385
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 90, 336
BseLI CCNNNNNNNGG 2 cut(s) 320, 409
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 4 cut(s) 89, 218, 354, 471
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 3 cut(s) 109, 313, 488
BshFI GGCC 3 cut(s) 95, 350, 473
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 4 cut(s) 258, 351, 398, 458
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 2 cut(s) 320, 409
BsmAI GTCTC 3 cut(s) 241, 302, 364
BsmBI CGTCTC 2 cut(s) 241, 302
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 3 cut(s) 95, 350, 473
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 144, 267
Bsp143I GATC 1 cut(s) 57
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 3 cut(s) 173, 341, 474
BspANI GGCC 3 cut(s) 95, 350, 473
BspCNI CTCAG 4 cut(s) 88, 217, 355, 472
BspLI GGNNCC 5 cut(s) 87, 220, 289, 425, 426
BspT107I GGYRCC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 90, 336
BssMI GATC 1 cut(s) 57
BssNI GRCGYC 2 cut(s) 15, 311
BssT1I CCWWGG 2 cut(s) 90, 336
Bst4CI ACNGT 1 cut(s) 502
BstACI GRCGYC 2 cut(s) 15, 311
BstC8I GCNNGC 3 cut(s) 48, 263, 348
BstDEI CTNAG 4 cut(s) 75, 204, 363, 480
BstH2I RGCGCY 2 cut(s) 151, 187
BstHHI GCGC 3 cut(s) 46, 150, 186
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 3 cut(s) 241, 302, 364
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 7 cut(s) 76, 101, 131, 310, 332, 347, 470
BstSCI CCNGG 2 cut(s) 396, 456
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 109, 313, 488
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 3 cut(s) 95, 350, 473
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 3 cut(s) 48, 263, 348
CfoI GCGC 3 cut(s) 46, 150, 186
Cfr13I GGNCC 2 cut(s) 400, 424
CseI GACGC 2 cut(s) 110, 319
DdeI CTNAG 4 cut(s) 75, 204, 363, 480
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 348
EciI GGCGGA 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 90, 336
Eco24I GRGCYC 2 cut(s) 144, 267
Eco47I GGWCC 2 cut(s) 400, 424
Eco47III AGCGCT 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 424
EcoT14I CCWWGG 2 cut(s) 90, 336
EcoT38I GRGCYC 2 cut(s) 144, 267
ErhI CCWWGG 2 cut(s) 90, 336
Esp3I CGTCTC 2 cut(s) 241, 302
FaiI YATR 1 cut(s) 497
FaqI GGGAC 1 cut(s) 437
Fnu4HI GCNGC 4 cut(s) 123, 327, 474, 477
FriOI GRGCYC 2 cut(s) 144, 267
Fsp4HI GCNGC 4 cut(s) 123, 327, 474, 477
GlaI GCGC 3 cut(s) 45, 149, 185
GluI GCNGC 4 cut(s) 123, 327, 474, 477
HaeII RGCGCY 2 cut(s) 151, 187
HaeIII GGCC 3 cut(s) 95, 350, 473
HapII CCGG 4 cut(s) 258, 351, 398, 458
HgaI GACGC 2 cut(s) 110, 319
HhaI GCGC 3 cut(s) 46, 150, 186
Hin1I GRCGYC 2 cut(s) 15, 311
Hin6I GCGC 3 cut(s) 44, 148, 184
HinP1I GCGC 3 cut(s) 44, 148, 184
HinfI GANTC 3 cut(s) 73, 254, 482
HpaII CCGG 4 cut(s) 258, 351, 398, 458
HphI GGTGA 2 cut(s) 149, 442
Hpy188I TCNGA 6 cut(s) 241, 323, 364, 394, 487, 506
Hpy188III TCNNGA 1 cut(s) 19
Hpy99I CGWCG 2 cut(s) 101, 104
HpyAV CCTTC 3 cut(s) 23, 409, 463
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4IV ACGT 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 7 cut(s) 76, 101, 131, 310, 332, 347, 470
HpyF3I CTNAG 4 cut(s) 75, 204, 363, 480
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 2 cut(s) 15, 311
HspAI GCGC 3 cut(s) 44, 148, 184
KflI GGGWCCC 1 cut(s) 424
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 6 cut(s) 139, 175, 224, 323, 353, 496
Lsp1109I GCAGC 3 cut(s) 109, 313, 488
MaeII ACGT 1 cut(s) 15
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 3 cut(s) 49, 263, 439
MhlI GDGCHC 2 cut(s) 144, 267
MlyI GAGTC 3 cut(s) 67, 248, 491
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 3 cut(s) 206, 232, 358
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 3 cut(s) 50, 79, 479
MspI CCGG 4 cut(s) 258, 351, 398, 458
MspR9I CCNGG 2 cut(s) 398, 458
MwoI GCNNNNNNNGC 7 cut(s) 76, 101, 131, 310, 332, 347, 470
NciI CCSGG 2 cut(s) 398, 458
NdeII GATC 1 cut(s) 57
NlaIV GGNNCC 5 cut(s) 87, 220, 289, 425, 426
NmeAIII GCCGAG 1 cut(s) 195
PaeR7I CTCGAG 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 4 cut(s) 124, 328, 475, 478
PleI GAGTC 3 cut(s) 67, 248, 490
PpsI GAGTC 3 cut(s) 67, 248, 490
PpuMI RGGWCCY 1 cut(s) 424
Psp124BI GAGCTC 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 424
PspN4I GGNNCC 5 cut(s) 87, 220, 289, 425, 426
PspPI GGNCC 2 cut(s) 400, 424
PspPPI RGGWCCY 1 cut(s) 424
PspXI VCTCGAGB 1 cut(s) 143
PvuII CAGCTG 3 cut(s) 50, 79, 479
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 4 cut(s) 123, 327, 474, 477
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 2 cut(s) 400, 424
SchI GAGTC 3 cut(s) 67, 248, 491
ScrFI CCNGG 2 cut(s) 398, 458
SduI GDGCHC 2 cut(s) 144, 267
SfcI CTRYAG 1 cut(s) 330
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 2 cut(s) 400, 424
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 143, 305
SmoI CTYRAG 2 cut(s) 143, 305
SsiI CCGC 3 cut(s) 173, 341, 474
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 396, 456
StyI CCWWGG 2 cut(s) 90, 336
TaaI ACNGT 1 cut(s) 502
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 144
TauI GCSGC 1 cut(s) 476
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 253
TseI GCWGC 3 cut(s) 122, 326, 476
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 400, 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 143
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.