Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Reverse (-)

21381827 .. 21384058

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0149900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGAGTGAAGAAGCAGAAGCGTCATAGGAAGATAGTGCGGTTCTACACAGCATGTTATGGGTTCAGACAGCCGTATAAGGTTCTCTGTGATGTCACTTTTGTGCATCACCTTGTCACCCATCGCATCACCCCTGCTGACAAGGCCCTTTCTCATATCGTTGGTGCCCCTGTCACCCTATTCACTACCAAATGTGCTGTTGCTGAGTTGAAGATGCACGGTCAGAGCCTCGGTCCCTCCCATTCCGAGTCTCTCGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATCTTATTGGCAAAGATAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTTCGTAAGAGAATTCTCAAGATTCCAGGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCGCCATCTGCTGCCCAGCGCCAGTTCGTCAAAACTTCTGAAGAACAACGTTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATCTGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGCTCTTGAAAAGAAGCGCACTACTAGGAAAGAATTGGGTGTGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGGGTCCAAACCCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGAAGATACCAGTATGAGGAGTAGAAAGCAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005504 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0023052 GO:0030054 GO:0031406 GO:0032870 GO:0033293 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

282

Amino Acids

32.12

Weight (kDa)

9.81

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fcf1	PF04900	54 - 152	1e-23	Fcf1
UTP23_sensor	PF24779	227 - 244	2.9e-06	UTP23 sensor motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 457
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	2 cut(s)	40, 802
AclI	AACGTT	1 cut(s)	505
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	786, 835
AgsI	TTSAA	4 cut(s)	211, 629, 739, 753
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	260, 467, 799
ApoI	RAATTY	1 cut(s)	396
AspLEI	GCGC	3 cut(s)	460, 477, 639
AspS9I	GGNCC	3 cut(s)	145, 233, 701
AsuHPI	GGTGA	4 cut(s)	101, 109, 121, 166
AvaII	GGWCC	2 cut(s)	233, 701
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	164, 457
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	247, 454, 811
BccI	CCATC	3 cut(s)	129, 469, 836
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	411
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	645
BfoI	RGCGCY	2 cut(s)	461, 478
BisI	GCNGC	3 cut(s)	261, 468, 800
BlsI	GCNGC	3 cut(s)	262, 469, 801
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	2 cut(s)	233, 701
BmgT120I	GGNCC	3 cut(s)	145, 233, 701
BmiI	GGNNCC	4 cut(s)	166, 235, 459, 702
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	4 cut(s)	115, 135, 204, 330
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpuEI	CTTGAG	2 cut(s)	386, 473
BsaHI	GRCGYC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	786, 835
Bse1I	ACTGG	2 cut(s)	478, 780
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	786, 835
BseMII	CTCAG	3 cut(s)	195, 386, 425
BseNI	ACTGG	2 cut(s)	478, 780
BseRI	GAGGAG	1 cut(s)	802
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	247, 454, 811
BseYI	CCCAGC	1 cut(s)	471
BsgI	GTGCAG	1 cut(s)	638
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	2 cut(s)	164, 457
BsiHKAI	GWGCWC	1 cut(s)	357
BslFI	GGGAC	2 cut(s)	219, 401
BslI	CCNNNNNNNGG	2 cut(s)	786, 835
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	219, 401
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	169, 357
Bsp143I	GATC	5 cut(s)	289, 328, 382, 601, 809
BspACI	CCGC	2 cut(s)	40, 802
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	3 cut(s)	196, 385, 426
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	4 cut(s)	166, 235, 459, 702
BspPI	GGATC	1 cut(s)	336
BspT107I	GGYRCC	2 cut(s)	164, 457
BsrI	ACTGG	2 cut(s)	478, 780
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	5 cut(s)	289, 328, 382, 601, 809
BssNAI	GTATAC	1 cut(s)	427
BssNI	GRCGYC	1 cut(s)	458
Bst1107I	GTATAC	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	800
BstACI	GRCGYC	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	378, 621
BstDEI	CTNAG	3 cut(s)	204, 372, 434
BstH2I	RGCGCY	2 cut(s)	461, 478
BstHHI	GCGC	3 cut(s)	460, 477, 639
BstKTI	GATC	5 cut(s)	292, 331, 385, 604, 812
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	5 cut(s)	289, 328, 382, 601, 809
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 308, 457, 464
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	3 cut(s)	247, 454, 811
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BstZ17I	GTATAC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	378, 621
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	3 cut(s)	460, 477, 639
Cfr13I	GGNCC	3 cut(s)	145, 233, 701
CseI	GACGC	1 cut(s)	11
CviAII	CATG	5 cut(s)	54, 293, 304, 325, 717
CviJI	RGCY	9 cut(s)	73, 146, 228, 260, 270, 302, 380, 623, 724
CviKI_1	RGCY	9 cut(s)	73, 146, 228, 260, 270, 302, 380, 623, 724
DdeI	CTNAG	3 cut(s)	204, 372, 434
DinI	GGCGCC	1 cut(s)	459
DpnI	GATC	5 cut(s)	291, 330, 384, 603, 811
DpnII	GATC	5 cut(s)	289, 328, 382, 601, 809
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
Eco47I	GGWCC	2 cut(s)	233, 701
Eco57I	CTGAAG	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	409
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
FaeI	CATG	5 cut(s)	57, 296, 307, 328, 720
FaqI	GGGAC	2 cut(s)	219, 401
FatI	CATG	5 cut(s)	53, 292, 303, 324, 716
FauNDI	CATATG	1 cut(s)	513
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	3 cut(s)	261, 468, 800
Fsp4HI	GCNGC	3 cut(s)	261, 468, 800
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	3 cut(s)	459, 476, 638
GluI	GCNGC	3 cut(s)	261, 468, 800
GsaI	CCCAGC	1 cut(s)	475
HaeII	RGCGCY	2 cut(s)	461, 478
HaeIII	GGCC	1 cut(s)	146
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	3 cut(s)	460, 477, 639
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	5 cut(s)	57, 296, 307, 328, 720
Hin6I	GCGC	3 cut(s)	458, 475, 637
HinP1I	GCGC	3 cut(s)	458, 475, 637
HinfI	GANTC	5 cut(s)	248, 406, 556, 572, 749
HphI	GGTGA	4 cut(s)	101, 109, 121, 166
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	8 cut(s)	68, 225, 247, 352, 435, 496, 580, 606
Hpy188III	TCNNGA	4 cut(s)	254, 293, 403, 626
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	751, 829
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	6 cut(s)	106, 217, 281, 321, 511, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 308, 457, 464
HpyF3I	CTNAG	3 cut(s)	204, 372, 434
HpySE526I	ACGT	1 cut(s)	505
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	5 cut(s)	57, 296, 307, 328, 720
HspAI	GCGC	3 cut(s)	458, 475, 637
KasI	GGCGCC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	289, 328, 382, 601, 809
Lsp1109I	GCAGC	3 cut(s)	247, 454, 811
LweI	GCATC	4 cut(s)	115, 135, 204, 330
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	3 cut(s)	94, 115, 172
MalI	GATC	5 cut(s)	291, 330, 384, 603, 811
MboI	GATC	5 cut(s)	289, 328, 382, 601, 809
MboII	GAAGA	8 cut(s)	22, 43, 223, 377, 509, 596, 785, 817
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	169, 357
MluCI	AATT	3 cut(s)	346, 396, 653
Mly113I	GGCGCC	1 cut(s)	458
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	519, 543
MnlI	CCTC	9 cut(s)	239, 247, 281, 289, 448, 540, 586, 684, 780
MseI	TTAA	2 cut(s)	681, 847
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	802
MspR9I	CCNGG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	4 cut(s)	143, 308, 457, 464
NarI	GGCGCC	1 cut(s)	458
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	5 cut(s)	289, 328, 382, 601, 809
NlaIII	CATG	5 cut(s)	57, 296, 307, 328, 720
NlaIV	GGNNCC	4 cut(s)	166, 235, 459, 702
NmuCI	GTSAC	3 cut(s)	94, 115, 172
NspI	RCATGY	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	101
PagI	TCATGA	1 cut(s)	292
PfeI	GAWTC	4 cut(s)	406, 556, 572, 749
PkrI	GCNGC	3 cut(s)	262, 469, 801
PleI	GAGTC	1 cut(s)	256
PluTI	GGCGCC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	256
Psp1406I	AACGTT	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	409
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	4 cut(s)	166, 235, 459, 702
PspPI	GGNCC	3 cut(s)	145, 233, 701
PsuI	RGATCY	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	681, 847
SatI	GCNGC	3 cut(s)	261, 468, 800
Sau3AI	GATC	5 cut(s)	289, 328, 382, 601, 809
Sau96I	GGNCC	3 cut(s)	145, 233, 701
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	169, 357
SetI	ASST	6 cut(s)	84, 114, 262, 287, 415, 508
SfaNI	GCATC	4 cut(s)	115, 135, 204, 330
SfoI	GGCGCC	1 cut(s)	459
SinI	GGWCC	2 cut(s)	233, 701
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	401, 452
SmoI	CTYRAG	2 cut(s)	401, 452
Sse9I	AATT	3 cut(s)	346, 396, 653
SsiI	CCGC	2 cut(s)	40, 802
SspDI	GGCGCC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	255
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	346, 396, 653
TfiI	GAWTC	4 cut(s)	406, 556, 572, 749
Tru1I	TTAA	2 cut(s)	681, 847
Tru9I	TTAA	2 cut(s)	681, 847
TseFI	GTSAC	3 cut(s)	94, 115, 172
TseI	GCWGC	3 cut(s)	260, 467, 799
Tsp45I	GTSAC	3 cut(s)	94, 115, 172
TspDTI	ATGAA	3 cut(s)	597, 705, 786
TspGWI	ACGGA	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	233, 701
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.