FvH4_4g11920

lipid-transfer protein DIR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001876
Physical Location & Seq
Reverse (-)
15643231 .. 15644340
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11920.t1

Sequence Viewer

Length: 315 bp
ATGGAGGCTGGTCGGAAGCTAGTCTTGGTCGTGGTGGCGGTGCTGGTGGTGGTTGCTTGCACGAATGTAGAGGTCTCTGATGCGCAGACCATTTGCAATGTGCCTCTGAATAACCTGATGTCCTGCAGGGCGGCCATAACAAGACCTAACCCTGCCAAGCCGAGCAAGGCCTGCTGCTCGGCGCTGTCGCTCGCCGACTTGGGGTGCCTCTGCTCGTACAAGAACTCCAACCTGTTGCCTTCCCTGGGGATTGACCCTGAACTTGCCATGCAGCTCCCTGGCAAGTGCAATCTTCCTCACCCTGCCAATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

105

Amino Acids

10.85

Weight (kDa)

8.1

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 14 - 102 2e-11 Probable lipid transfer
Tryp_alpha_amyl PF00234 32 - 104 2.1e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 204
AciI CCGC 2 cut(s) 38, 131
AcoI YGGCCR 1 cut(s) 132
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 201, 245
AjnI CCWGG 2 cut(s) 243, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 2 cut(s) 19, 274
AluI AGCT 2 cut(s) 19, 274
Alw26I GTCTC 1 cut(s) 79
AoxI GGCC 2 cut(s) 132, 168
ApeKI GCWGC 2 cut(s) 174, 271
AspLEI GCGC 2 cut(s) 85, 184
AsuHPI GGTGA 1 cut(s) 290
BanI GGYRCC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 161, 283
BciT130I CCWGG 2 cut(s) 245, 279
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 2 cut(s) 20, 313
BfmI CTRYAG 1 cut(s) 124
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 3 cut(s) 132, 175, 272
BlsI GCNGC 3 cut(s) 133, 176, 273
Bme1390I CCNGG 2 cut(s) 245, 279
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 2 cut(s) 245, 279
BmsI GCATC 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 3 cut(s) 243, 244, 277
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 245
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 245, 279
BseDI CCNNGG 3 cut(s) 243, 244, 277
BseLI CCNNNNNNNGG 2 cut(s) 201, 245
BseMI GCAATG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 161, 283
BshFI GGCC 2 cut(s) 134, 170
BshNI GGYRCC 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 201, 245
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 2 cut(s) 134, 170
Bso31I GGTCTC 1 cut(s) 79
BspACI CCGC 2 cut(s) 38, 131
BspANI GGCC 2 cut(s) 134, 170
BspLI GGNNCC 1 cut(s) 206
BspMAI CTGCAG 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 103
BssECI CCNNGG 3 cut(s) 243, 244, 277
Bst2UI CCWGG 2 cut(s) 245, 279
BstAPI GCANNNNNTGC 1 cut(s) 171
BstC8I GCNNGC 3 cut(s) 58, 172, 192
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 2 cut(s) 85, 184
BstMAI GTCTC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 2 cut(s) 245, 279
BstSCI CCNGG 2 cut(s) 243, 277
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 161, 283
BsuRI GGCC 2 cut(s) 134, 170
Cac8I GCNNGC 3 cut(s) 58, 172, 192
CfoI GCGC 2 cut(s) 85, 184
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 268
CviJI RGCY 6 cut(s) 8, 19, 134, 160, 170, 274
CviKI_1 RGCY 6 cut(s) 8, 19, 134, 160, 170, 274
CviQI GTAC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 243, 277
FaeI CATG 1 cut(s) 271
FaiI YATR 2 cut(s) 137, 269
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 132, 175, 272
Fsp4HI GCNGC 3 cut(s) 132, 175, 272
FspBI CTAG 2 cut(s) 20, 313
FspI TGCGCA 1 cut(s) 84
GlaI GCGC 2 cut(s) 84, 183
GluI GCNGC 3 cut(s) 132, 175, 272
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 2 cut(s) 134, 170
HhaI GCGC 2 cut(s) 85, 184
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 2 cut(s) 83, 182
HinP1I GCGC 2 cut(s) 83, 182
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 3 cut(s) 15, 79, 108
HpyAV CCTTC 1 cut(s) 249
HpyCH4V TGCA 5 cut(s) 60, 96, 126, 271, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 2 cut(s) 83, 182
LmnI GCTCC 1 cut(s) 279
Lsp1109I GCAGC 2 cut(s) 161, 283
LweI GCATC 1 cut(s) 70
MaeI CTAG 2 cut(s) 20, 313
MboII GAAGA 1 cut(s) 284
MfeI CAATTG 1 cut(s) 307
MluCI AATT 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 4 cut(s) 64, 114, 218, 306
MspR9I CCNGG 2 cut(s) 245, 279
MunI CAATTG 1 cut(s) 307
MvaI CCWGG 2 cut(s) 245, 279
MwoI GCNNNNNNNGC 1 cut(s) 171
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 206
NmeAIII GCCGAG 2 cut(s) 158, 186
NsbI TGCGCA 1 cut(s) 84
PasI CCCWGGG 1 cut(s) 244
PceI AGGCCT 1 cut(s) 170
PkrI GCNGC 3 cut(s) 133, 176, 273
Psp6I CCWGG 2 cut(s) 243, 277
PspGI CCWGG 2 cut(s) 243, 277
PspN4I GGNNCC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 128
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SatI GCNGC 3 cut(s) 132, 175, 272
SbfI CCTGCAGG 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 245, 279
SdaI CCTGCAGG 1 cut(s) 128
SetI ASST 6 cut(s) 21, 75, 117, 148, 234, 276
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 124
Sse8387I CCTGCAGG 1 cut(s) 128
Sse9I AATT 1 cut(s) 307
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 2 cut(s) 38, 131
SspMI CTAG 2 cut(s) 20, 313
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 243, 277
TasI AATT 1 cut(s) 307
TauI GCSGC 1 cut(s) 134
TseI GCWGC 2 cut(s) 174, 271
XspI CTAG 2 cut(s) 20, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.