Prupe.1G179900_v2.0.a1

lipid-transfer protein DIR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001876
Physical Location & Seq
Forward (+)
15585771 .. 15586531
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G179900.1

Sequence Viewer

Length: 330 bp
ATGATCATGAAGGGTTTTCATCAAAAGCTCCTAGTTGTTGTGGCTGTGGTTTTGGTTGCACTTGCAAGCAATGGTGGTTTTGTTCAGGTTTGTGATGCTCAGAACATATGCAATGTCTCTTTGAATGGTTTGATGACTTGCAGGCCAGCCGTGACCGCCCCGAACCCGGCCCCGCCTACAACCGCCTGCTGCTCGGCGCTGTCACATGCCGACATGGGCTGCCTTTGCTCCTACAAGAACTCCAACCTCTTGCCTTCTCTAGGGATTGACCCTAACCTTGCCCTCCAGCTTCCTGCCAAGTGCAGGCTTCCTCATCCTGCCAATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

110

Amino Acids

11.33

Weight (kDa)

8.43

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 156, 173, 183
AfiI CCNNNNNNNGG 3 cut(s) 166, 260, 303
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 2 cut(s) 28, 289
AluI AGCT 2 cut(s) 28, 289
Alw26I GTCTC 1 cut(s) 121
AoxI GGCC 2 cut(s) 143, 168
ApeKI GCWGC 2 cut(s) 189, 219
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 167
BbvI GCAGC 2 cut(s) 176, 206
BceAI ACGGC 1 cut(s) 134
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 3 cut(s) 32, 260, 328
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 2 cut(s) 190, 220
BlsI GCNGC 2 cut(s) 191, 221
Bme1390I CCNGG 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 260, 303
Bse3DI GCAATG 2 cut(s) 76, 118
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 3 cut(s) 166, 260, 303
BseMI GCAATG 2 cut(s) 76, 118
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 176, 206
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 2 cut(s) 145, 170
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 3 cut(s) 166, 260, 303
BsmAI GTCTC 1 cut(s) 121
BsnI GGCC 2 cut(s) 145, 170
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 3 cut(s) 156, 173, 183
BspANI GGCC 2 cut(s) 145, 170
BspCNI CTCAG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 171
BsrDI GCAATG 2 cut(s) 76, 118
BssMI GATC 1 cut(s) 3
BstC8I GCNNGC 5 cut(s) 67, 143, 147, 187, 305
BstDEI CTNAG 1 cut(s) 99
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 313
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 155, 225
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 176, 206
BsuRI GGCC 2 cut(s) 145, 170
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 5 cut(s) 67, 143, 147, 187, 305
CciI TCATGA 1 cut(s) 6
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 169
CviAII CATG 3 cut(s) 7, 206, 214
CviJI RGCY 8 cut(s) 28, 44, 145, 149, 170, 219, 289, 307
CviKI_1 RGCY 8 cut(s) 28, 44, 145, 149, 170, 219, 289, 307
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EcoNI CCTNNNNNAGG 1 cut(s) 258
FaeI CATG 3 cut(s) 10, 209, 217
FaiI YATR 5 cut(s) 8, 107, 109, 207, 215
FatI CATG 3 cut(s) 6, 205, 213
FauI CCCGC 1 cut(s) 180
FauNDI CATATG 1 cut(s) 107
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 190, 220
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 190, 220
FspBI CTAG 3 cut(s) 32, 260, 328
GlaI GCGC 1 cut(s) 198
GluI GCNGC 2 cut(s) 190, 220
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 2 cut(s) 145, 170
HapII CCGG 1 cut(s) 167
HhaI GCGC 1 cut(s) 199
Hin1II CATG 3 cut(s) 10, 209, 217
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HpaII CCGG 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 4, 264
HpyCH4V TGCA 5 cut(s) 59, 65, 111, 141, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 225
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 3 cut(s) 10, 209, 217
HspAI GCGC 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 33, 233
LpnPI CCDG 8 cut(s) 71, 127, 159, 180, 199, 289, 299, 306
Lsp1109I GCAGC 2 cut(s) 176, 206
LweI GCATC 1 cut(s) 85
MaeI CTAG 3 cut(s) 32, 260, 328
MaeIII GTNAC 2 cut(s) 151, 201
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MfeI CAATTG 1 cut(s) 322
MluCI AATT 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 3 cut(s) 257, 293, 321
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 155, 225
NciI CCSGG 1 cut(s) 167
NdeI CATATG 1 cut(s) 107
NdeII GATC 1 cut(s) 3
NlaIII CATG 3 cut(s) 10, 209, 217
NlaIV GGNNCC 1 cut(s) 171
NmeAIII GCCGAG 1 cut(s) 173
NmuCI GTSAC 2 cut(s) 151, 201
NspI RCATGY 1 cut(s) 209
PagI TCATGA 1 cut(s) 6
PkrI GCNGC 2 cut(s) 191, 221
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 169
SatI GCNGC 2 cut(s) 190, 220
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 167
SetI ASST 5 cut(s) 30, 90, 249, 279, 291
SfaNI GCATC 1 cut(s) 85
Sse9I AATT 1 cut(s) 322
SsiI CCGC 3 cut(s) 156, 173, 183
SspMI CTAG 3 cut(s) 32, 260, 328
StyD4I CCNGG 1 cut(s) 165
TasI AATT 1 cut(s) 322
TseFI GTSAC 2 cut(s) 151, 201
TseI GCWGC 2 cut(s) 189, 219
Tsp45I GTSAC 2 cut(s) 151, 201
TspDTI ATGAA 2 cut(s) 8, 23
XagI CCTNNNNNAGG 1 cut(s) 258
XceI RCATGY 1 cut(s) 209
XspI CTAG 3 cut(s) 32, 260, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.