Rorug04G0094200

lipid-transfer protein DIR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001876
Physical Location & Seq
Forward (+)
14624082 .. 14644518
20437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0094200.1

Sequence Viewer

Length: 3318 bp
ATGGTAGCTACTCGCTATTACTTCCGCTTACGTTTGGTCGCTGTCGCACCGGAATTGACGGGTCTCTTCTCCGGCGTCTCCTCAACAGTTCGCAGATTGGACCCTTACTACGATCCTAGTTCTCCAGTGGTCAACCACTCAACCCGTTGGCAACAACATCAGTTGCATCCATATCGGTGTTCTTGGTCTGGAGAGGAGACTACAACACCGGCTCACAGAAGGATGAATCACTCAATTGGGTTGCCTTATAACCCAAGCAATGACTTGGAGACCGGTCTGAAGGAGGATCATGTTGAGCGCATGAACCGGTGGACGCAAGCGAAACTATATCTGAAAGCATTGCACCGATTCCGTCACACACTAGTCCTGAAAAAGGCAGAAGAAAAGAAGCAGGCAGCACGGAAACTACTTAGAGCACATACCCAAGCCCTACGAGCTGCGGCTATCTTCAAAGAAGTTGCAGATCAAGTGAAAGGGTCTGGTGATTATTTTCCAATTGAACCAGATGAACTTGCTCGTTTGACGAGGAGTAGTGATGTTGATGCTCTGCAGCAATATGGGGGGAAGGAAGGCTTGGCAGATTTACTGAAAACAGATTTAGACAAGGGAATTGATGGGGATGATTTACTAAAGCGGACAATTAAATTTGGATCAAACATATATCCTCCAAAAACAGCAATGAGCCGCTGGACATGTCTTCGGGAAGCTCTGTACGATTTTACTCGGATCGTTTTGGTGATTGCTTTTATGGGTTCTGTTGTGATGGGTATTCTGGAAGAGACTAAAAAGCTGGGATGGCACGATGTGTTCAGCGTTGCTATTGCAGCTGCCATGTTCATTCTTATCACAGTCTTATCTGAGTATATTCAAGCTCGTCAGTTCCAGCATATGATTATCACGGAGGAAATCAGAAACATAAAATTGAAGGTTATTAGAGCTGGTCGACAAGTTGTGGTTTCTAATTGTGATATTGTTGTTGGTGATGTTCTACCTCTTAAGACTGGTGATGAGGTCCCTGCTGATGGCATTTTAATCCGTGGTCGCTCACTTGCAATTGATAAGAGTAGAGTCACTGGAGAGAGCAAGATTTTTCACAAGGATTCAAGGAACCCATTTCTACGATCTGGCTGGAAAGTAGCACATGGCAGTGCTACTATGCTGGTAACTGGGGTTGGGAAATGTACTGAATCAGGAATTCTCAGGGCTAACACTTATTCAAAAGACACCGAGAATAAAACCCCCTTGCAGGTGCTTTTAAAGGAGGTTGCTACTTTCATGGGTGCTGTCGGATTCATGGGTGCTGCCATTGTTGCATATGTTGTTTGGTTCAGAGACTTCTTTACTGGTGATAATTCATCAAATGGAAGTCCTGAACCTGGAAGTACACTTGAAGAAGTGATTAGAATTAGTACCATTGCAGTTGCCATTTTTGTCGTTGCATTACCTGAAGTGCTTCCTTCAGCTTTCAACATAAGCCGTCTCAGCACAATGAAAAAGATGAAGGCAGACAATGCCTTGGTGCGGAGGCCAGCTGTATGTGAAACCATGGCCTTATGCAATGATGCACTTTGTGACAAGACTGGAATAACTTTGAACCAGATGACTGTTTCTGAGGCCTATGCTGGTGAGAAGAAAATCAATTTTGCTGACAGCACAAGCAACTTGTCTCCGATACTATCGTCCTTACTTGTTGAAGGAATTGCTCAGAATACGAGTGGCAGTCTATCTGTGCTTGGGAGTGGTGATGTTCAGGCTTCCGGATCACCAATTGATAGGGCAATTCTGCATTGGGGAGTCAAGCTGGGAATGAATTTTGATGATATAATGTCTCAGTCTCCAGTTATGCAAGTTTTGCCATTCAGTTCAGAGAAAAAACGAGGTGGTGTTGCACTTAATCTGACACATGGTCGAGTTCATGTACACTGGAAAGGGGCAGCTGAAGGAGTCTTGGCCTCATGCACAAGATACATTGGGGCTAATGATCAGGTTTTACCAATGGATGATGAGAAGTTAACATTTTTTCAAAAAGCTATCGAGGATATGGCTTCTGGAGGTTTGCATTGCGTTGCTATTGCATATAGATCACTTGAGTTGGAAAATGTTCTAATCAATAGTAATGGACAACTAGCGCAGTGGGAACTACCTGAGGATGACCTCATTTTACTAGCTGTTGTTGGTATGAAGGATGATAGTCAACCGGGGATCAAGGACTCGGTGGAAATATTGCAAAGAGCTGGCATTAAGGTACGCCTTGTTACGCATGACAATCCTCAAACTGCAAAAGCAATTGCTAAGGAATGTAGCATACTTGCTTCTGATGGGTCAGATGTTAGTGAGGAAAATCTTATTGAAGGAAAAGTGTTCCGAGAACTTTCTGATAGTCAGAGAGAAGGATTAGCAGAGAAGATTTTGGTAATGGCACGGTCTTCCCCCAATGACAAGCTTTTGCTTGTGCGAGCACTGCAGAAAAGAGGAAAGATTGTTGCTGTCACTGGATATGTCAGTAATGATGCTCATGCATTACATGAGGCCGACATTGGTCTTGCTATGGGTATTCAAGGGACTGAAGTTGTTAAAGAGAGTTCAGATATCATAATCTTGGATGACAATTTTGCTACAGTAGCCAAGTGTTTTAGATGGGGACGATCGATGCATGAAAAGGTTCTGAAAGTTATGCAGCAGCAACTTACAGTCAATATTGTAGCAGTAACCATAAACTGCATGGCGGCAGTTTACTATCGTTACATCCCGCTCAATGCTGTGCAGTTTGTGTGGGTGAATCTTATCATATTTGGTCTTGGACCACTAGCACTGGCTACTGAATCTCCGGCTGATCACCTGATGAACGTACCCCCTATTGACCGAGGACAAACTCTTATAAAATATATTCAGTGGAAGAGACTGTTGACACAGGTTCTGTACCAAATTATTGCCCTGCTTGTCATCAATTTTCAAGGAGGGAGTTTACTGAAAAATGATACCAGAGACCATGCCACAAAAATGAAGAATACAATGATATTCAACACATTTGTTGTTTGTCAGATTTCCATTGAATTCGGAGTTCGAAAGACTGGTATAGTGGACCATCCTTTGAAATGGATTACTGCTAACTCTGTGTTTCTGGGAATAGTTGGAATAATTCTTTTGATTCAGTTTATCATCATTGAGTTTCTTGGAAAGGCGTTTTTCTTAGTCAGGCTTGACTGGAAAGAGTGGGAGTTTTCGCTGACTCTTGGCATTGTCGATGGAGTTGCGGTAAGTGAACTTGAAAGTTGTGTCACTGTGTATGGTGTATATAAGAAATGCCCTTCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

1105

Amino Acids

122.21

Weight (kDa)

8.29

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 186 - 248 2.3e-07 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 307 - 398 1.3e-15 P-type ATPase actuator domain
Cation_ATPase PF13246 564 - 732 2.8e-27 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 720 - 845 4.5e-06 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 916 - 1081 1.7e-26 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 249, 2879
AarI CACCTGC 1 cut(s) 1237
Acc36I ACCTGC 1 cut(s) 1237
AccBSI CCGCTC 1 cut(s) 2752
AccI GTMKAC 1 cut(s) 943
AccIII TCCGGA 1 cut(s) 1757
AciI CCGC 8 cut(s) 25, 440, 634, 685, 1522, 2726, 2750, 3254
AclWI GGATC 6 cut(s) 107, 294, 658, 734, 1768, 2210
AcsI RAATTY 4 cut(s) 644, 1194, 1810, 3053
AcuI CTGAAG 5 cut(s) 299, 1443, 1467, 1959, 2586
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 2 cut(s) 805, 1571
AfaI GTAC 8 cut(s) 713, 1183, 1384, 1411, 1920, 2247, 2850, 2921
AfiI CCNNNNNNNGG 5 cut(s) 373, 1022, 1246, 1376, 1521
AflII CTTAAG 1 cut(s) 995
AflIII ACRYGT 1 cut(s) 692
AgeI ACCGGT 2 cut(s) 272, 306
AhdI GACNNNNNGTC 1 cut(s) 1905
AhlI ACTAGT 1 cut(s) 361
AjnI CCWGG 1 cut(s) 1375
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
Alw21I GWGCWC 2 cut(s) 418, 2461
AlwI GGATC 6 cut(s) 107, 294, 658, 734, 1768, 2210
AlwNI CAGNNNCTG 1 cut(s) 2917
Aor13HI TCCGGA 1 cut(s) 1757
AoxI GGCC 5 cut(s) 1526, 1548, 1614, 1950, 2529
ApeKI GCWGC 9 cut(s) 395, 437, 550, 824, 827, 1301, 1934, 2677, 2680
ApoI RAATTY 4 cut(s) 644, 1194, 1810, 3053
AsiGI ACCGGT 2 cut(s) 272, 306
Asp700I GAANNNNTTC 3 cut(s) 1452, 2100, 2661
AspLEI GCGC 2 cut(s) 300, 2131
AspS9I GGNCC 4 cut(s) 100, 1012, 2801, 3082
AsuC2I CCSGG 1 cut(s) 2199
AsuII TTCGAA 1 cut(s) 3064
AvaII GGWCC 4 cut(s) 100, 1012, 2801, 3082
AxyI CCTNAGG 1 cut(s) 2145
BaeI ACNNNNGTAYC 2 cut(s) 1664, 1697
BbsI GAAGAC 2 cut(s) 689, 2418
Bbv12I GWGCWC 2 cut(s) 418, 2461
BbvI GCAGC 9 cut(s) 407, 424, 562, 814, 836, 1288, 1946, 2689, 2692
BccI CCATC 8 cut(s) 608, 757, 789, 1016, 2312, 2631, 3093, 3239
BceAI ACGGC 1 cut(s) 1461
BcgI CGANNNNNNTGC 4 cut(s) 155, 189, 3233, 3267
BciT130I CCWGG 1 cut(s) 1377
BclI TGATCA 2 cut(s) 1981, 2833
BcnI CCSGG 1 cut(s) 2199
BcuI ACTAGT 1 cut(s) 361
BfaI CTAG 5 cut(s) 117, 362, 2126, 2165, 2807
BfmI CTRYAG 3 cut(s) 548, 2462, 2616
BfrI CTTAAG 1 cut(s) 995
BfuAI ACCTGC 1 cut(s) 1237
Bme1390I CCNGG 2 cut(s) 1377, 2199
Bme18I GGWCC 4 cut(s) 100, 1012, 2801, 3082
BmeRI GACNNNNNGTC 1 cut(s) 1905
BmgT120I GGNCC 4 cut(s) 100, 1012, 2801, 3082
BmiI GGNNCC 3 cut(s) 102, 1014, 1109
BmrFI CCNGG 2 cut(s) 1377, 2199
BmrI ACTGGG 1 cut(s) 1176
BmsI GCATC 5 cut(s) 175, 532, 1552, 2500, 2640
BmuI ACTGGG 1 cut(s) 1176
BoxI GACNNNNGTC 1 cut(s) 2538
BpiI GAAGAC 2 cut(s) 689, 2418
BpmI CTGGAG 5 cut(s) 108, 210, 1095, 1821, 2070
Bpu10I CCTNAGC 1 cut(s) 2292
Bpu14I TTCGAA 1 cut(s) 3064
BpuEI CTTGAG 1 cut(s) 2108
BpuMI CCSGG 1 cut(s) 2199
Bsa29I ATCGAT 1 cut(s) 2648
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 3 cut(s) 68, 263, 2979
BsaJI CCNNGG 5 cut(s) 1036, 1515, 1545, 2198, 2863
BsaWI WCCGGW 4 cut(s) 49, 272, 306, 1757
BsaXI ACNNNNNCTCC 4 cut(s) 2809, 2839, 3240, 3270
Bsc4I CCNNNNNNNGG 5 cut(s) 373, 1022, 1246, 1376, 1521
Bse118I RCCGGY 3 cut(s) 208, 272, 306
Bse21I CCTNAGG 1 cut(s) 2145
Bse3DI GCAATG 6 cut(s) 265, 338, 684, 1413, 1564, 2059
BseAI TCCGGA 1 cut(s) 1757
BseBI CCWGG 1 cut(s) 1377
BseCI ATCGAT 1 cut(s) 2648
BseDI CCNNGG 5 cut(s) 1036, 1515, 1545, 2198, 2863
BseLI CCNNNNNNNGG 5 cut(s) 373, 1022, 1246, 1376, 1521
BseMI GCAATG 6 cut(s) 265, 338, 684, 1413, 1564, 2059
BseMII CTCAG 7 cut(s) 849, 1213, 1495, 1602, 1718, 1844, 2136
BseRI GAGGAG 3 cut(s) 70, 209, 541
BseXI GCAGC 9 cut(s) 407, 424, 562, 814, 836, 1288, 1946, 2689, 2692
BseYI CCCAGC 2 cut(s) 790, 1801
BsgI GTGCAG 1 cut(s) 2783
Bsh1285I CGRYCG 1 cut(s) 2648
BshFI GGCC 5 cut(s) 1528, 1550, 1616, 1952, 2531
BshTI ACCGGT 2 cut(s) 272, 306
BshVI ATCGAT 1 cut(s) 2648
BsiEI CGRYCG 1 cut(s) 2648
BsiHKAI GWGCWC 2 cut(s) 418, 2461
BsiSI CCGG 8 cut(s) 50, 72, 209, 273, 307, 1758, 2198, 2828
BslFI GGGAC 3 cut(s) 998, 2575, 2655
BslI CCNNNNNNNGG 5 cut(s) 373, 1022, 1246, 1376, 1521
BsmBI CGTCTC 2 cut(s) 82, 1484
BsmFI GGGAC 3 cut(s) 998, 2575, 2655
BsnI GGCC 5 cut(s) 1528, 1550, 1616, 1952, 2531
Bso31I GGTCTC 3 cut(s) 68, 263, 2979
Bsp119I TTCGAA 1 cut(s) 3064
Bsp1286I GDGCHC 2 cut(s) 418, 2461
Bsp13I TCCGGA 1 cut(s) 1757
Bsp1407I TGTACA 1 cut(s) 1918
Bsp19I CCATGG 1 cut(s) 1545
BspACI CCGC 8 cut(s) 25, 440, 634, 685, 1522, 2726, 2750, 3254
BspANI GGCC 5 cut(s) 1528, 1550, 1616, 1952, 2531
BspCNI CTCAG 7 cut(s) 850, 1212, 1494, 1603, 1717, 1843, 2137
BspDI ATCGAT 1 cut(s) 2648
BspEI TCCGGA 1 cut(s) 1757
BspLI GGNNCC 3 cut(s) 102, 1014, 1109
BspMAI CTGCAG 2 cut(s) 552, 2466
BspMI ACCTGC 1 cut(s) 1237
BspPI GGATC 6 cut(s) 107, 294, 658, 734, 1768, 2210
BspT104I TTCGAA 1 cut(s) 3064
BspTI CTTAAG 1 cut(s) 995
BspTNI GGTCTC 3 cut(s) 68, 263, 2979
BsrBI CCGCTC 1 cut(s) 2752
BsrDI GCAATG 6 cut(s) 265, 338, 684, 1413, 1564, 2059
BsrFI RCCGGY 3 cut(s) 208, 272, 306
BsrGI TGTACA 1 cut(s) 1918
BssAI RCCGGY 3 cut(s) 208, 272, 306
BssECI CCNNGG 5 cut(s) 1036, 1515, 1545, 2198, 2863
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 1515, 1545
Bst2UI CCWGG 1 cut(s) 1377
Bst4CI ACNGT 8 cut(s) 88, 850, 1606, 2424, 2620, 2692, 2904, 3283
Bst6I CTCTTC 3 cut(s) 71, 771, 2891
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 995
BstAPI GCANNNNNTGC 2 cut(s) 1511, 1852
BstAUI TGTACA 1 cut(s) 1918
BstBI TTCGAA 1 cut(s) 3064
BstC8I GCNNGC 5 cut(s) 318, 393, 1530, 2236, 2457
BstDSI CCRYGG 2 cut(s) 1036, 1545
BstENI CCTNNNNNAGG 1 cut(s) 371
BstHHI GCGC 2 cut(s) 300, 2131
BstMCI CGRYCG 1 cut(s) 2648
BstMWI GCNNNNNNNGC 9 cut(s) 434, 796, 824, 1310, 1482, 1511, 1852, 2461, 2621
BstNI CCWGG 1 cut(s) 1377
BstNSI RCATGY 1 cut(s) 696
BstPAI GACNNNNGTC 1 cut(s) 2538
BstSCI CCNGG 2 cut(s) 1375, 2197
BstSFI CTRYAG 3 cut(s) 548, 2462, 2616
BstV1I GCAGC 9 cut(s) 407, 424, 562, 814, 836, 1288, 1946, 2689, 2692
BstV2I GAAGAC 2 cut(s) 689, 2418
Bsu15I ATCGAT 1 cut(s) 2648
Bsu36I CCTNAGG 1 cut(s) 2145
BsuRI GGCC 5 cut(s) 1528, 1550, 1616, 1952, 2531
BsuTUI ATCGAT 1 cut(s) 2648
BtgI CCRYGG 2 cut(s) 1036, 1545
BtsI GCAGTG 3 cut(s) 1153, 2138, 2459
BveI ACCTGC 1 cut(s) 1237
Cac8I GCNNGC 5 cut(s) 318, 393, 1530, 2236, 2457
CaiI CAGNNNCTG 1 cut(s) 2917
CfoI GCGC 2 cut(s) 300, 2131
Cfr10I RCCGGY 3 cut(s) 208, 272, 306
Cfr13I GGNCC 4 cut(s) 100, 1012, 2801, 3082
ClaI ATCGAT 1 cut(s) 2648
CseI GACGC 2 cut(s) 64, 322
Csp6I GTAC 8 cut(s) 712, 1182, 1383, 1410, 1919, 2246, 2849, 2920
CspAI ACCGGT 2 cut(s) 272, 306
CviQI GTAC 8 cut(s) 712, 1182, 1383, 1410, 1919, 2246, 2849, 2920
DraI TTTAAA 1 cut(s) 1257
DraIII CACNNNGTG 2 cut(s) 805, 1571
DriI GACNNNNNGTC 1 cut(s) 1905
Eam1104I CTCTTC 3 cut(s) 71, 771, 2891
Eam1105I GACNNNNNGTC 1 cut(s) 1905
EarI CTCTTC 3 cut(s) 71, 771, 2891
Eco130I CCWWGG 2 cut(s) 1515, 1545
Eco147I AGGCCT 1 cut(s) 1616
Eco31I GGTCTC 3 cut(s) 68, 263, 2979
Eco32I GATATC 1 cut(s) 2590
Eco47I GGWCC 4 cut(s) 100, 1012, 2801, 3082
Eco57I CTGAAG 5 cut(s) 299, 1443, 1467, 1959, 2586
Eco81I CCTNAGG 1 cut(s) 2145
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 1012
EcoRI GAATTC 2 cut(s) 1194, 3053
EcoRII CCWGG 1 cut(s) 1375
EcoRV GATATC 1 cut(s) 2590
EcoT14I CCWWGG 2 cut(s) 1515, 1545
EcoT22I ATGCAT 2 cut(s) 2521, 2655
ErhI CCWWGG 2 cut(s) 1515, 1545
Esp3I CGTCTC 2 cut(s) 82, 1484
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 3 cut(s) 998, 2575, 2655
FauI CCCGC 1 cut(s) 2757
FauNDI CATATG 2 cut(s) 888, 1315
FbaI TGATCA 2 cut(s) 1981, 2833
FblI GTMKAC 1 cut(s) 943
FspBI CTAG 5 cut(s) 117, 362, 2126, 2165, 2807
GlaI GCGC 2 cut(s) 299, 2130
GsaI CCCAGC 2 cut(s) 794, 1805
GsuI CTGGAG 5 cut(s) 108, 210, 1095, 1821, 2070
HaeIII GGCC 5 cut(s) 1528, 1550, 1616, 1952, 2531
HapII CCGG 8 cut(s) 50, 72, 209, 273, 307, 1758, 2198, 2828
HgaI GACGC 2 cut(s) 64, 322
HhaI GCGC 2 cut(s) 300, 2131
Hin1I GRCGYC 1 cut(s) 75
Hin6I GCGC 2 cut(s) 298, 2129
HinP1I GCGC 2 cut(s) 298, 2129
HincII GTYRAC 5 cut(s) 133, 944, 2013, 2195, 2907
HindII GTYRAC 5 cut(s) 133, 944, 2013, 2195, 2907
HindIII AAGCTT 1 cut(s) 2441
HpaI GTTAAC 1 cut(s) 2013
HpaII CCGG 8 cut(s) 50, 72, 209, 273, 307, 1758, 2198, 2828
Hpy188III TCNNGA 8 cut(s) 189, 367, 701, 773, 1191, 1370, 1758, 2049
HpyCH4III ACNGT 8 cut(s) 88, 850, 1606, 2424, 2620, 2692, 2904, 3283
HpyCH4IV ACGT 2 cut(s) 31, 2847
HpyF10VI GCNNNNNNNGC 9 cut(s) 434, 796, 824, 1310, 1482, 1511, 1852, 2461, 2621
HpySE526I ACGT 2 cut(s) 31, 2847
Hsp92I GRCGYC 1 cut(s) 75
HspAI GCGC 2 cut(s) 298, 2129
Kpn2I TCCGGA 1 cut(s) 1757
Ksp22I TGATCA 2 cut(s) 1981, 2833
KspAI GTTAAC 1 cut(s) 2013
Lsp1109I GCAGC 9 cut(s) 407, 424, 562, 814, 836, 1288, 1946, 2689, 2692
LweI GCATC 5 cut(s) 175, 532, 1552, 2500, 2640
MaeI CTAG 5 cut(s) 117, 362, 2126, 2165, 2807
MaeII ACGT 2 cut(s) 31, 2847
MaeIII GTNAC 9 cut(s) 353, 1069, 1162, 1571, 2254, 2488, 2707, 2741, 3277
MbiI CCGCTC 1 cut(s) 2752
MfeI CAATTG 5 cut(s) 234, 495, 1053, 1767, 2286
MhlI GDGCHC 2 cut(s) 418, 2461
MlyI GAGTC 5 cut(s) 1077, 1803, 1953, 2204, 3223
MmeI TCCRAC 3 cut(s) 1267, 2073, 3112
Mph1103I ATGCAT 2 cut(s) 2521, 2655
MroI TCCGGA 1 cut(s) 1757
MroXI GAANNNNTTC 3 cut(s) 1452, 2100, 2661
MseI TTAA 8 cut(s) 642, 996, 1031, 1256, 1893, 2012, 2241, 2574
MslI CAYNNNNRTG 3 cut(s) 175, 1146, 2999
MspA1I CMGCKG 4 cut(s) 687, 827, 1532, 1937
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 8 cut(s) 50, 72, 209, 273, 307, 1758, 2198, 2828
MspR9I CCNGG 2 cut(s) 1377, 2199
MunI CAATTG 5 cut(s) 234, 495, 1053, 1767, 2286
MvaI CCWGG 1 cut(s) 1377
MwoI GCNNNNNNNGC 9 cut(s) 434, 796, 824, 1310, 1482, 1511, 1852, 2461, 2621
NciI CCSGG 1 cut(s) 2199
NcoI CCATGG 1 cut(s) 1545
NdeI CATATG 2 cut(s) 888, 1315
NlaIV GGNNCC 3 cut(s) 102, 1014, 1109
NmuCI GTSAC 5 cut(s) 353, 1069, 1571, 2488, 3277
NsiI ATGCAT 2 cut(s) 2521, 2655
NspI RCATGY 1 cut(s) 696
NspV TTCGAA 1 cut(s) 3064
PaqCI CACCTGC 1 cut(s) 1237
PceI AGGCCT 1 cut(s) 1616
PciI ACATGT 1 cut(s) 692
PdmI GAANNNNTTC 3 cut(s) 1452, 2100, 2661
PfeI GAWTC 8 cut(s) 226, 348, 1100, 1187, 1290, 2779, 2822, 3148
PinAI ACCGGT 2 cut(s) 272, 306
Ple19I CGATCG 1 cut(s) 2648
PleI GAGTC 5 cut(s) 1076, 1802, 1952, 2204, 3223
PpsI GAGTC 5 cut(s) 1076, 1802, 1952, 2204, 3223
PpuMI RGGWCCY 1 cut(s) 1012
PscI ACATGT 1 cut(s) 692
PshAI GACNNNNGTC 1 cut(s) 2538
PsiI TTATAA 2 cut(s) 249, 2879
Psp5II RGGWCCY 1 cut(s) 1012
Psp6I CCWGG 1 cut(s) 1375
PspFI CCCAGC 2 cut(s) 790, 1801
PspGI CCWGG 1 cut(s) 1375
PspN4I GGNNCC 3 cut(s) 102, 1014, 1109
PspPI GGNCC 4 cut(s) 100, 1012, 2801, 3082
PspPPI RGGWCCY 1 cut(s) 1012
PstI CTGCAG 2 cut(s) 552, 2466
PstNI CAGNNNCTG 1 cut(s) 2917
PvuI CGATCG 1 cut(s) 2648
PvuII CAGCTG 3 cut(s) 827, 1532, 1937
RsaI GTAC 8 cut(s) 713, 1183, 1384, 1411, 1920, 2247, 2850, 2921
RsaNI GTAC 8 cut(s) 712, 1182, 1383, 1410, 1919, 2246, 2849, 2920
RseI CAYNNNNRTG 3 cut(s) 175, 1146, 2999
SalI GTCGAC 1 cut(s) 942
SaqAI TTAA 8 cut(s) 642, 996, 1031, 1256, 1893, 2012, 2241, 2574
Sau96I GGNCC 4 cut(s) 100, 1012, 2801, 3082
SchI GAGTC 5 cut(s) 1077, 1803, 1953, 2204, 3223
ScrFI CCNGG 2 cut(s) 1377, 2199
SduI GDGCHC 2 cut(s) 418, 2461
SfaNI GCATC 5 cut(s) 175, 532, 1552, 2500, 2640
SfcI CTRYAG 3 cut(s) 548, 2462, 2616
SfuI TTCGAA 1 cut(s) 3064
SinI GGWCC 4 cut(s) 100, 1012, 2801, 3082
SmiMI CAYNNNNRTG 3 cut(s) 175, 1146, 2999
SmlI CTYRAG 2 cut(s) 995, 2087
SmoI CTYRAG 2 cut(s) 995, 2087
SpeI ACTAGT 1 cut(s) 361
SseBI AGGCCT 1 cut(s) 1616
SsiI CCGC 8 cut(s) 25, 440, 634, 685, 1522, 2726, 2750, 3254
SspI AATATT 2 cut(s) 2223, 2698
SspMI CTAG 5 cut(s) 117, 362, 2126, 2165, 2807
StuI AGGCCT 1 cut(s) 1616
StyD4I CCNGG 2 cut(s) 1375, 2197
StyI CCWWGG 2 cut(s) 1515, 1545
TaaI ACNGT 8 cut(s) 88, 850, 1606, 2424, 2620, 2692, 2904, 3283
TaiI ACGT 2 cut(s) 34, 2850
TaqI TCGA 6 cut(s) 943, 1909, 2034, 2648, 3064, 3243
TaqII GACCGA 1 cut(s) 2877
TatI WGTACW 3 cut(s) 1181, 1382, 1918
TauI GCSGC 3 cut(s) 443, 687, 2729
TfiI GAWTC 8 cut(s) 226, 348, 1100, 1187, 1290, 2779, 2822, 3148
Tru1I TTAA 8 cut(s) 642, 996, 1031, 1256, 1893, 2012, 2241, 2574
Tru9I TTAA 8 cut(s) 642, 996, 1031, 1256, 1893, 2012, 2241, 2574
TseFI GTSAC 5 cut(s) 353, 1069, 1571, 2488, 3277
TseI GCWGC 9 cut(s) 395, 437, 550, 824, 827, 1301, 1934, 2677, 2680
Tsp45I GTSAC 5 cut(s) 353, 1069, 1571, 2488, 3277
TspGWI ACGGA 4 cut(s) 341, 415, 914, 1025
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 4 cut(s) 100, 1012, 2801, 3082
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 4 cut(s) 644, 1194, 1810, 3053
XceI RCATGY 1 cut(s) 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 2719
XmiI GTMKAC 1 cut(s) 943
XmnI GAANNNNTTC 3 cut(s) 1452, 2100, 2661
XspI CTAG 5 cut(s) 117, 362, 2126, 2165, 2807
Zsp2I ATGCAT 2 cut(s) 2521, 2655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.