Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Reverse (-)

28828289 .. 28828591

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1159700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGGTGGAAACTACAAGTTGGTGGTTGTTTTGGTGGTGGCACTGGTTGTGTTGCTTAAAGGGTCGACAGTGTCGAGCTTGTGCAACATGACCGACGAAGGTATCGCCGATTGCAAGCCATCGGTTACGAAGACGAATCCAACTCCGCCAACTCCTGAGTGTTGTGAGGCTCTCAAAGGAGCTGACTTGAAATGCTTGTGTGGTTACAAGAACTCGTTTCTGTTGCCTTCTCTCGGTATTGACCCCGCTCTTGCCATGGCTCTACCGGCTAAGTGCAACCTCACCCCTCCTAACGATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005504 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0023052 GO:0030054 GO:0031406 GO:0032870 GO:0033293 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

101

Amino Acids

10.37

Weight (kDa)

6.08

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	15 - 97	2.6e-13	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 100	2.1e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	2 cut(s)	146, 246
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	2 cut(s)	78, 182
AluI	AGCT	2 cut(s)	78, 182
AsuHPI	GGTGA	1 cut(s)	274
BaeI	ACNNNNGTAYC	2 cut(s)	85, 118
BbsI	GAAGAC	1 cut(s)	137
BccI	CCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	233
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	2 cut(s)	146, 246
BspCNI	CTCAG	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	2 cut(s)	156, 270
BstDSI	CCRYGG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	41, 75
Cac8I	GCNNGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	265
CviAII	CATG	2 cut(s)	88, 256
CviJI	RGCY	6 cut(s)	78, 118, 170, 182, 260, 269
CviKI_1	RGCY	6 cut(s)	78, 118, 170, 182, 260, 269
DdeI	CTNAG	2 cut(s)	156, 270
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	91, 259
FaiI	YATR	2 cut(s)	89, 257
FatI	CATG	2 cut(s)	87, 255
FauI	CCCGC	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	65
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	2 cut(s)	91, 259
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	92, 237
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	84, 114, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	156, 270
Hsp92II	CATG	2 cut(s)	91, 259
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	3 cut(s)	29, 168, 279
MaeIII	GTNAC	2 cut(s)	124, 203
MbiI	CCGCTC	1 cut(s)	248
MboII	GAAGA	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	160, 290, 297
MseI	TTAA	1 cut(s)	57
MspI	CCGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	255
NlaIII	CATG	2 cut(s)	91, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	136
PflFI	GACNNNGTC	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	70
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	57
SetI	ASST	4 cut(s)	80, 103, 184, 282
SsiI	CCGC	2 cut(s)	146, 246
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	65, 74
TaqII	GACCGA	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	48, 75
TspRI	CASTG	2 cut(s)	48, 75
Tth111I	GACNNNGTC	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.