Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Reverse (-)

18553830 .. 18554105

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G190500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCTGTGTTGCTCGAAGGGTCGAGAGTGTTGGGTTTGTGCAATATGAGCGATGAAGGCTTAGCTTCTTGCAAGCCAGCGGTGGCAAAGGCAACACCAGAGAAGCCAAACCCAGATAAGCCAACTCCCGAGTGTTGTGAGGCTCTCAAAGGAGCTGACTTGAAATGCCTCTGTGGATATAAGAACTCGTTTCTTTTGCCTTCTTTGGGCATCGACCCTGCCCTTGCCATGGCTCTTCCTGCTAAGTGCAACCTCACCCCTCCTGCCGATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005504 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0023052 GO:0030054 GO:0031406 GO:0032870 GO:0033293 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

92

Amino Acids

9.4

Weight (kDa)

5.24

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	206, 229
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	2 cut(s)	65, 155
AluI	AGCT	2 cut(s)	65, 155
Ama87I	CYCGRG	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	128
BfaI	CTAG	1 cut(s)	274
BlpI	GCTNAGC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 229
BseDI	CCNNGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	206, 229
BsiHKCI	CYCGRG	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	206, 229
BsoBI	CYCGRG	1 cut(s)	128
Bsp1720I	GCTNAGC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	80
BspQI	GCTCTTC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	74, 78
BstDEI	CTNAG	2 cut(s)	61, 243
BstDSI	CCRYGG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 57, 239
BtgI	CCRYGG	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	74, 78
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	9 cut(s)	5, 60, 65, 76, 106, 121, 143, 155, 233
CviKI_1	RGCY	9 cut(s)	5, 60, 65, 76, 106, 121, 143, 155, 233
DdeI	CTNAG	2 cut(s)	61, 243
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	232
FaiI	YATR	3 cut(s)	47, 180, 230
FatI	CATG	1 cut(s)	228
FspBI	CTAG	1 cut(s)	274
Hin1II	CATG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	24, 128
HpyAV	CCTTC	3 cut(s)	11, 50, 210
HpyCH4V	TGCA	3 cut(s)	42, 72, 249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 57, 239
HpyF3I	CTNAG	2 cut(s)	61, 243
Hsp92II	CATG	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	5 cut(s)	90, 111, 126, 231, 252
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	274
MboII	GAAGA	1 cut(s)	227
MnlI	CCTC	4 cut(s)	133, 179, 263, 270
MspA1I	CMGCKG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	48, 57, 239
NcoI	CCATGG	1 cut(s)	228
NlaIII	CATG	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	240
SetI	ASST	3 cut(s)	67, 157, 255
SfaNI	GCATC	1 cut(s)	219
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	228
TaqI	TCGA	3 cut(s)	15, 23, 213
TspDTI	ATGAA	1 cut(s)	69
XspI	CTAG	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.