Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Reverse (-)

19646028 .. 19646840

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48485.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCGAGCAAGAAAGCAGCTATGGTTATGATGGCGATGATCGTGATAATGGCTATGTTGGTCGATACATCAGTAGCGATAGATCTCTGCGGCATGAGCCAGGATGAGTTGAATGAGTGCAAACCAGCGGTTAGCAAGGAGAATCCGACGAGCCCATCACAGCCTTGCTGCACCGCTCTGCAACACGCTGATTTTGCATGTCTTTGTGGTTACAAGAACTCTCCATGGCTCGGTTCTTTCGGTGTTGATCCTGAACTCGCTTCTGCTCTCCCCAAACAGTGTGGTCTAGCCAACGCCCCAACTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005504 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0023052 GO:0030054 GO:0031406 GO:0032870 GO:0033293 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

102

Amino Acids

10.7

Weight (kDa)

4.79

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	12 - 101	1.1e-13	Probable lipid transfer
Tryp_alpha_amyl	PF00234	30 - 100	2.4e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	176
AciI	CCGC	3 cut(s)	90, 128, 174
AclWI	GGATC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AlwI	GGATC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	17, 168
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BanII	GRGCYC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	29, 155
BccI	CCATC	2 cut(s)	25, 163
BciT130I	CCWGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	287
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	3 cut(s)	18, 91, 169
BlsI	GCNGC	3 cut(s)	19, 92, 170
Bme1390I	CCNGG	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	29, 155
BsgI	GTGCAG	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	39, 82, 247
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	3 cut(s)	90, 128, 174
BspPI	GGATC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	3 cut(s)	39, 82, 247
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	3 cut(s)	42, 85, 250
BstMBI	GATC	3 cut(s)	39, 82, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 194
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	29, 155
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	7
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	3 cut(s)	94, 198, 225
CviJI	RGCY	7 cut(s)	20, 53, 99, 153, 163, 229, 290
CviKI_1	RGCY	7 cut(s)	20, 53, 99, 153, 163, 229, 290
DpnI	GATC	3 cut(s)	41, 84, 249
DpnII	GATC	3 cut(s)	39, 82, 247
Eco130I	CCWWGG	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	3 cut(s)	97, 201, 228
FaiI	YATR	6 cut(s)	23, 29, 56, 95, 199, 226
FatI	CATG	3 cut(s)	93, 197, 224
Fnu4HI	GCNGC	3 cut(s)	18, 91, 169
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	18, 91, 169
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	3 cut(s)	18, 91, 169
Hin1II	CATG	3 cut(s)	97, 201, 228
HinfI	GANTC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	43, 251
Hpy99I	CGWCG	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	120, 171, 181, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 194
Hsp92II	CATG	3 cut(s)	97, 201, 228
Kzo9I	GATC	3 cut(s)	39, 82, 247
LpnPI	CCDG	4 cut(s)	86, 113, 138, 264
Lsp1109I	GCAGC	2 cut(s)	29, 155
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	41, 84, 249
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	3 cut(s)	39, 82, 247
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	170
MseI	TTAA	1 cut(s)	307
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	96, 194
NcoI	CCATGG	1 cut(s)	224
NdeII	GATC	3 cut(s)	39, 82, 247
NlaIII	CATG	3 cut(s)	97, 201, 228
NspI	RCATGY	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	19, 92, 170
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	3 cut(s)	18, 91, 169
Sau3AI	GATC	3 cut(s)	39, 82, 247
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	1 cut(s)	22
SsiI	CCGC	3 cut(s)	90, 128, 174
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	63
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TscAI	CASTG	1 cut(s)	284
TseI	GCWGC	2 cut(s)	17, 168
TspRI	CASTG	1 cut(s)	284
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.