Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Reverse (-)

46093287 .. 46094085

Gene Structure 799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGAAACAAGTTGGTTGTGATTTTGGTCGTGGCAATGCTGGTATTTTTTGAAGGGTCAACAGCTTTTACCTTCTGCAAGATGAGTGACGATGGTCTAACTGCTTGCAAGCCATCGGTGACAAAGCCGAACCCTGTTGATCCATCCCCAAAGTGTTGCAAGGCTCTTTCCGGAGCTGACTTGGGGTGTCTTTGCTCTTACAAGGCCTCACCAGTGTTGCCTTCTCTCGGAATTGCTCCCGATCTTGCCATGGGACTACCAGCTAAGTGCGGCCTCGCCCCTCCTGCCAATTGCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005504 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0023052 GO:0030054 GO:0031406 GO:0032870 GO:0033293 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

99

Amino Acids

10.05

Weight (kDa)

8.13

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	8 - 96	2e-12	Probable lipid transfer
Tryp_alpha_amyl	PF00234	26 - 98	1.1e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	3 cut(s)	65, 176, 263
AluI	AGCT	3 cut(s)	65, 176, 263
AlwI	GGATC	1 cut(s)	134
Aor13HI	TCCGGA	1 cut(s)	170
AoxI	GGCC	2 cut(s)	204, 271
AspLEI	GCGC	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	130, 201
BccI	CCATC	3 cut(s)	86, 121, 151
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BoxI	GACNNNNGTC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	206, 273
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	206, 273
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	139, 241
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	2 cut(s)	206, 273
BspEI	TCCGGA	1 cut(s)	170
BspPI	GGATC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	139, 241
BssT1I	CCWWGG	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	106, 110
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	142, 244
BstMBI	GATC	2 cut(s)	139, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 293
BstPAI	GACNNNNGTC	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	206, 273
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	106, 110
CfoI	GCGC	1 cut(s)	296
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	8 cut(s)	65, 112, 127, 164, 176, 206, 263, 273
CviKI_1	RGCY	8 cut(s)	65, 112, 127, 164, 176, 206, 263, 273
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	141, 243
DpnII	GATC	2 cut(s)	139, 241
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	253
FaiI	YATR	1 cut(s)	251
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	271
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	206, 273
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	130, 201
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	2 cut(s)	171, 239
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	3 cut(s)	47, 82, 231
HpyCH4V	TGCA	3 cut(s)	78, 108, 159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 293
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	294
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	139, 241
LmnI	GCTCC	2 cut(s)	173, 241
LpnPI	CCDG	5 cut(s)	26, 147, 184, 225, 273
MaeIII	GTNAC	2 cut(s)	86, 118
MalI	GATC	2 cut(s)	141, 243
MboI	GATC	2 cut(s)	139, 241
MfeI	CAATTG	1 cut(s)	289
MluCI	AATT	2 cut(s)	231, 289
MnlI	CCTC	3 cut(s)	217, 284, 291
MroI	TCCGGA	1 cut(s)	170
MspI	CCGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	284, 293
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	2 cut(s)	139, 241
NlaIII	CATG	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	86, 118
PceI	AGGCCT	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	272
PshAI	GACNNNNGTC	1 cut(s)	93
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	2 cut(s)	139, 241
SetI	ASST	4 cut(s)	67, 74, 178, 265
Sse9I	AATT	2 cut(s)	231, 289
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	249
TasI	AATT	2 cut(s)	231, 289
TauI	GCSGC	1 cut(s)	273
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	86, 118
Tsp45I	GTSAC	2 cut(s)	86, 118
TspRI	CASTG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.