Rh4DG149600

lipid-transfer protein DIR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001876
Physical Location & Seq
Reverse (-)
29844661 .. 29846260
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG149600.1

Sequence Viewer

Length: 312 bp
ATGGCTGCTCGGAAGCTGGTGTTGGTCATGGCAGCGGTGCTGGTGGTGGTTGCTTGCATTAATGTAGAGGTCTCCGATGCGCAGACCATTTGCAATGTGTCTGTGAATAACTTGATGTCCTGCAAGCCGGCCGTAACAAAACCTAACCCTTCCAGGCCGACCAAGACCTGCTGCTCGGCGCTGTCGCACGCCGACTTGAAGTGCCTCTGCTCCTACAGGAACTCGAACCTGTTGCCTTCTCTGGGGATTGACCCTAACCTTGCCATGCAGCTCCCTGCCAAGTGCAAGCTTCCTCACCCTGCCAATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

103

Amino Acids

10.9

Weight (kDa)

8.97

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 13 - 101 3.1e-12 Probable lipid transfer
Tryp_alpha_amyl PF00234 31 - 103 8.3e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 176
AciI CCGC 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 16, 271, 289
AluI AGCT 3 cut(s) 16, 271, 289
Alw26I GTCTC 1 cut(s) 76
AoxI GGCC 2 cut(s) 129, 155
ApeKI GCWGC 4 cut(s) 5, 32, 171, 268
AseI ATTAAT 1 cut(s) 60
AspLEI GCGC 2 cut(s) 82, 181
AsuHPI GGTGA 1 cut(s) 287
BbvI GCAGC 3 cut(s) 44, 158, 280
BceAI ACGGC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 310
BfmI CTRYAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 176
BisI GCNGC 4 cut(s) 6, 33, 172, 269
BlsI GCNGC 4 cut(s) 7, 34, 173, 270
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 67
BsaI GGTCTC 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse118I RCCGGY 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 100
BseX3I CGGCCG 1 cut(s) 129
BseXI GCAGC 3 cut(s) 44, 158, 280
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 131, 157
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 131, 157
Bso31I GGTCTC 1 cut(s) 76
BspACI CCGC 1 cut(s) 35
BspANI GGCC 2 cut(s) 131, 157
BspMI ACCTGC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 154
BstC8I GCNNGC 5 cut(s) 55, 125, 129, 189, 287
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 2 cut(s) 82, 181
BstMAI GTCTC 1 cut(s) 76
BstMCI CGRYCG 1 cut(s) 132
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 44, 158, 280
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 2 cut(s) 131, 157
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 5 cut(s) 55, 125, 129, 189, 287
CfoI GCGC 2 cut(s) 82, 181
Cfr10I RCCGGY 1 cut(s) 127
CviAII CATG 2 cut(s) 28, 265
CviJI RGCY 7 cut(s) 5, 16, 127, 131, 157, 271, 289
CviKI_1 RGCY 7 cut(s) 5, 16, 127, 131, 157, 271, 289
EaeI YGGCCR 1 cut(s) 129
EagI CGGCCG 1 cut(s) 129
EclXI CGGCCG 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 152
FaeI CATG 2 cut(s) 31, 268
FaiI YATR 2 cut(s) 29, 266
FatI CATG 2 cut(s) 27, 264
Fnu4HI GCNGC 4 cut(s) 6, 33, 172, 269
Fsp4HI GCNGC 4 cut(s) 6, 33, 172, 269
FspBI CTAG 1 cut(s) 310
FspI TGCGCA 1 cut(s) 81
GlaI GCGC 2 cut(s) 81, 180
GluI GCNGC 4 cut(s) 6, 33, 172, 269
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 2 cut(s) 131, 157
HapII CCGG 1 cut(s) 128
HhaI GCGC 2 cut(s) 82, 181
Hin1II CATG 2 cut(s) 31, 268
Hin6I GCGC 2 cut(s) 80, 179
HinP1I GCGC 2 cut(s) 80, 179
HindIII AAGCTT 1 cut(s) 287
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 12, 76
HpyAV CCTTC 2 cut(s) 159, 246
HpyCH4V TGCA 5 cut(s) 57, 93, 123, 268, 285
Hsp92II CATG 2 cut(s) 31, 268
HspAI GCGC 2 cut(s) 80, 179
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 215, 276
Lsp1109I GCAGC 3 cut(s) 44, 158, 280
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 133
MfeI CAATTG 1 cut(s) 304
MluCI AATT 1 cut(s) 304
MnlI CCTC 3 cut(s) 61, 215, 303
MroNI GCCGGC 1 cut(s) 127
MseI TTAA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 154
MunI CAATTG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 154
NaeI GCCGGC 1 cut(s) 129
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 2 cut(s) 31, 268
NmeAIII GCCGAG 1 cut(s) 155
NsbI TGCGCA 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 129
PkrI GCNGC 4 cut(s) 7, 34, 173, 270
PshBI ATTAAT 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 4 cut(s) 6, 33, 172, 269
ScrFI CCNGG 1 cut(s) 154
SetI ASST 8 cut(s) 18, 72, 145, 170, 231, 261, 273, 291
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 214
Sse9I AATT 1 cut(s) 304
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 152
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 304
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseI GCWGC 4 cut(s) 5, 32, 171, 268
VspI ATTAAT 1 cut(s) 60
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.