Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Forward (+)

23268722 .. 23269030

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012862

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTGAAGATGGGAAACAAGTTGGTTGTGATTTTGGTCGTGGCAATGCTGGTATTTATCGAAGGGTCAACAGCTTTTACCTTCTGCAAGATGAGTGACGATGGTCTAACTGCTTGCAAGCCATCGGTGACAAAGCCGAACCCTGTTGATCCATCCCCAAAGTGTTGCAAGGCTCTTTCCGGAGCTGACTTGGGGTGTCTTTGCTCTTACAAGGCCTCACCAGTGTTGCCTACTCTCGGAATTGCTCCCGATCTTGCCATGGGACTACCAGCTAAGTGCGGCATTGCCCCTCCTGCCAATTGCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005504 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0023052 GO:0030054 GO:0031406 GO:0032870 GO:0033293 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

103

Amino Acids

10.39

Weight (kDa)

8.45

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	11 - 99	3.1e-12	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 101	1.2e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	74, 185, 272
AluI	AGCT	3 cut(s)	74, 185, 272
AlwI	GGATC	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	305
AsuHPI	GGTGA	3 cut(s)	16, 139, 210
BccI	CCATC	4 cut(s)	4, 95, 130, 160
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
BoxI	GACNNNNGTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	2 cut(s)	51, 282
BseAI	TCCGGA	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	2 cut(s)	51, 282
BseNI	ACTGG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	215
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	148, 250
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	215
BspEI	TCCGGA	1 cut(s)	179
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	51, 282
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	148, 250
BssT1I	CCWWGG	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	115, 119
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	2 cut(s)	151, 253
BstMBI	GATC	2 cut(s)	148, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 302
BstPAI	GACNNNNGTC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	115, 119
CfoI	GCGC	1 cut(s)	305
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	7 cut(s)	74, 121, 136, 173, 185, 215, 272
CviKI_1	RGCY	7 cut(s)	74, 121, 136, 173, 185, 215, 272
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	150, 252
DpnII	GATC	2 cut(s)	148, 250
Eco130I	CCWWGG	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	262
FaiI	YATR	1 cut(s)	260
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	280
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	1 cut(s)	180
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	3 cut(s)	16, 139, 210
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	2 cut(s)	180, 248
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	56, 91
HpyCH4V	TGCA	3 cut(s)	87, 117, 168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 302
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	303
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	148, 250
LmnI	GCTCC	2 cut(s)	182, 250
LpnPI	CCDG	5 cut(s)	35, 156, 193, 234, 282
MaeIII	GTNAC	2 cut(s)	95, 127
MalI	GATC	2 cut(s)	150, 252
MboI	GATC	2 cut(s)	148, 250
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	298
MluCI	AATT	2 cut(s)	240, 298
MnlI	CCTC	2 cut(s)	226, 300
MroI	TCCGGA	1 cut(s)	179
MspI	CCGG	1 cut(s)	180
MunI	CAATTG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	293, 302
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	148, 250
NlaIII	CATG	1 cut(s)	262
NmuCI	GTSAC	2 cut(s)	95, 127
PceI	AGGCCT	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	281
PshAI	GACNNNNGTC	1 cut(s)	102
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	148, 250
SetI	ASST	4 cut(s)	76, 83, 187, 274
Sse9I	AATT	2 cut(s)	240, 298
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	258
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	240, 298
TauI	GCSGC	1 cut(s)	282
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	95, 127
Tsp45I	GTSAC	2 cut(s)	95, 127
TspRI	CASTG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.