Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Reverse (-)

15641284 .. 15641598

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGGCTGCTCGGAAGCTGGTGTTGGTCTTGGCGGCGGTGCTAGTGGTGGCTGCCTGCATTAATGTAGAGGTCTCTGAAGCGCAGACCATTTGCAATGTATCTGTGAATAACTTGATGTCCTGCAAGCCGGCCGTAACAAAGCCTAACCCTGCCAGGCCAACCCAGGCCTGCTGCTCGGCGCTGTCGCATGCCGACTTGGGATGCCTCTGCTCTTACAGGAACTCCAACCTGTTGCCTTCCCTGGGGATTGACCCTAAACTTGCCATGCAGCTCCCAGGAAAGTGCAAGCTTCCTCACCCTGCCAATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

105

Amino Acids

10.88

Weight (kDa)

8.64

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	12 - 102	3.9e-12	Probable lipid transfer
Tryp_alpha_amyl	PF00234	32 - 104	4.5e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 38
AcoI	YGGCCR	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	245
AjnI	CCWGG	4 cut(s)	155, 165, 243, 277
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	3 cut(s)	19, 274, 292
AluI	AGCT	3 cut(s)	19, 274, 292
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	3 cut(s)	132, 158, 168
ApeKI	GCWGC	4 cut(s)	8, 53, 174, 271
AseI	ATTAAT	1 cut(s)	63
AspLEI	GCGC	2 cut(s)	85, 184
AsuHPI	GGTGA	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	40, 161, 283
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	4 cut(s)	157, 167, 245, 279
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	44, 313
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	5 cut(s)	9, 36, 54, 175, 272
BlsI	GCNGC	5 cut(s)	10, 37, 55, 176, 273
Bme1390I	CCNGG	4 cut(s)	157, 167, 245, 279
BmrFI	CCNGG	4 cut(s)	157, 167, 245, 279
BmsI	GCATC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	4 cut(s)	165, 243, 244, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	4 cut(s)	157, 167, 245, 279
BseDI	CCNNGG	4 cut(s)	165, 243, 244, 277
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	103
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	40, 161, 283
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	134, 160, 170
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	134, 160, 170
Bso31I	GGTCTC	1 cut(s)	79
BspACI	CCGC	2 cut(s)	35, 38
BspANI	GGCC	3 cut(s)	134, 160, 170
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	4 cut(s)	165, 243, 244, 277
Bst2UI	CCWGG	4 cut(s)	157, 167, 245, 279
BstC8I	GCNNGC	6 cut(s)	58, 128, 132, 172, 192, 290
BstF5I	GGATG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	85, 184
BstMAI	GTCTC	1 cut(s)	79
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	4 cut(s)	157, 167, 245, 279
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	4 cut(s)	155, 165, 243, 277
BstV1I	GCAGC	3 cut(s)	40, 161, 283
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	134, 160, 170
BtsCI	GGATG	1 cut(s)	209
Cac8I	GCNNGC	6 cut(s)	58, 128, 132, 172, 192, 290
CfoI	GCGC	2 cut(s)	85, 184
Cfr10I	RCCGGY	1 cut(s)	130
CviAII	CATG	2 cut(s)	191, 268
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
EclXI	CGGCCG	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	99
EcoRII	CCWGG	4 cut(s)	155, 165, 243, 277
FaeI	CATG	2 cut(s)	194, 271
FaiI	YATR	2 cut(s)	192, 269
FatI	CATG	2 cut(s)	190, 267
Fnu4HI	GCNGC	5 cut(s)	9, 36, 54, 175, 272
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	5 cut(s)	9, 36, 54, 175, 272
FspBI	CTAG	2 cut(s)	44, 313
GlaI	GCGC	2 cut(s)	84, 183
GluI	GCNGC	5 cut(s)	9, 36, 54, 175, 272
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	134, 160, 170
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	2 cut(s)	85, 184
Hin1II	CATG	2 cut(s)	194, 271
Hin6I	GCGC	2 cut(s)	83, 182
HinP1I	GCGC	2 cut(s)	83, 182
HindIII	AAGCTT	1 cut(s)	290
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	15, 79
HpyAV	CCTTC	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	60, 96, 126, 271, 288
Hsp92II	CATG	2 cut(s)	194, 271
HspAI	GCGC	2 cut(s)	83, 182
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	279
Lsp1109I	GCAGC	3 cut(s)	40, 161, 283
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	2 cut(s)	44, 313
MaeIII	GTNAC	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	307
MluCI	AATT	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	64, 218, 306
MroNI	GCCGGC	1 cut(s)	130
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	4 cut(s)	157, 167, 245, 279
MunI	CAATTG	1 cut(s)	307
MvaI	CCWGG	4 cut(s)	157, 167, 245, 279
NaeI	GCCGGC	1 cut(s)	132
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	194, 271
NmeAIII	GCCGAG	1 cut(s)	158
NspI	RCATGY	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	194
PasI	CCCWGGG	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	132
PkrI	GCNGC	5 cut(s)	10, 37, 55, 176, 273
PshBI	ATTAAT	1 cut(s)	63
Psp6I	CCWGG	4 cut(s)	155, 165, 243, 277
PspGI	CCWGG	4 cut(s)	155, 165, 243, 277
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	5 cut(s)	9, 36, 54, 175, 272
ScrFI	CCNGG	4 cut(s)	157, 167, 245, 279
SetI	ASST	5 cut(s)	21, 75, 234, 276, 294
SfaNI	GCATC	1 cut(s)	194
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	1 cut(s)	307
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	2 cut(s)	35, 38
SspMI	CTAG	2 cut(s)	44, 313
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	4 cut(s)	155, 165, 243, 277
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	4 cut(s)	8, 53, 174, 271
VspI	ATTAAT	1 cut(s)	63
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	2 cut(s)	44, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.