Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006070.1

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Forward (+)

10394 .. 10696

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006070.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgggtagtttcaataagctaatggcgatcctggtggtgacaatgcttgtgcttgtcgaagggtcaagagctttcagcttttgcaatgtgagtgaggatgctctaactgcttgcaagccgtcggtgacagagccgaacccatctgatccgactgcggagtgttgcaaggatctttccggggccgacttggattgcctttgcggttacaagacctcaccggtgttgcctgctctcggaatcagtccaaaacttgcgatgggacttccggctaagtgcggcctcacccctcctgccaattgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005504 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0023052 GO:0030054 GO:0031406 GO:0032870 GO:0033293 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

100

Amino Acids

10.31

Weight (kDa)

4.81

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	155, 201, 276
AclWI	GGATC	3 cut(s)	22, 140, 177
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgeI	ACCGGT	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	3 cut(s)	19, 71, 78
AluI	AGCT	3 cut(s)	19, 71, 78
AlwI	GGATC	3 cut(s)	22, 140, 177
AoxI	GGCC	2 cut(s)	180, 277
AsiGI	ACCGGT	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	49, 136, 207, 274
BccI	CCATC	2 cut(s)	148, 250
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	178
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	32, 178
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	32, 178
BmsI	GCATC	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	182, 279
BshTI	ACCGGT	1 cut(s)	217
BsiSI	CCGG	3 cut(s)	177, 218, 266
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	182, 279
Bsp143I	GATC	3 cut(s)	27, 145, 169
BspACI	CCGC	3 cut(s)	155, 201, 276
BspANI	GGCC	2 cut(s)	182, 279
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	3 cut(s)	22, 140, 177
BsrDI	GCAATG	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	27, 145, 169
Bst2UI	CCWGG	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	112, 116, 228
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	3 cut(s)	30, 148, 172
BstMBI	GATC	3 cut(s)	27, 145, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	30, 176
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	182, 279
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	112, 116, 228
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	180
CspAI	ACCGGT	1 cut(s)	217
CviJI	RGCY	8 cut(s)	19, 71, 78, 118, 133, 182, 269, 279
CviKI_1	RGCY	8 cut(s)	19, 71, 78, 118, 133, 182, 269, 279
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	3 cut(s)	29, 147, 171
DpnII	GATC	3 cut(s)	27, 145, 169
EcoRII	CCWGG	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	182, 279
HapII	CCGG	3 cut(s)	177, 218, 266
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	3 cut(s)	177, 218, 266
HphI	GGTGA	4 cut(s)	49, 136, 207, 274
Hpy188I	TCNGA	3 cut(s)	145, 150, 236
Hpy188III	TCNNGA	1 cut(s)	66
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	84, 114, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	27, 145, 169
LpnPI	CCDG	6 cut(s)	17, 44, 190, 231, 240, 279
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	3 cut(s)	37, 124, 203
MalI	GATC	3 cut(s)	29, 147, 171
MboI	GATC	3 cut(s)	27, 145, 169
MfeI	CAATTG	1 cut(s)	295
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	88, 223, 290, 297
MspI	CCGG	3 cut(s)	177, 218, 266
MspR9I	CCNGG	2 cut(s)	32, 178
MunI	CAATTG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	3 cut(s)	27, 145, 169
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	37, 124
PfeI	GAWTC	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	169
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	3 cut(s)	27, 145, 169
Sau96I	GGNCC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	32, 178
SetI	ASST	4 cut(s)	21, 73, 80, 215
SfaNI	GCATC	1 cut(s)	88
SgrAI	CRCCGGYG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	3 cut(s)	155, 201, 276
StyD4I	CCNGG	2 cut(s)	30, 176
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	295
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	37, 124
Tsp45I	GTSAC	2 cut(s)	37, 124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.