Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Reverse (-)

45462842 .. 45463153

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG263300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTGAAGATGGGTAGTTTCAATAAGCTAATGGCGATCCTGGTGGTGACAATGCTTGTGCTTGTCGAAGGGTCAAGAGCTTTCAGCTTTTGCAATATGAGTGAGGATGGTCTAACTGCTTGCAAGCCGTCGGTGACAGAGCCGAACCCATCTGATCCGACTGCGGAGTGTTGCAAGGATCTTTCCGGGGCCGACTTGGATTGCCTTTGCGGTTACAAGACCTCACCGGTGTTGCCTACTCTCGGAATCAGTCCAAAACTTGCGATGGGACTTCCGGCTAAGTGCGGCCTCACCCCTCCTGCCAATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005504 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0023052 GO:0030054 GO:0031406 GO:0032870 GO:0033293 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

103

Amino Acids

10.72

Weight (kDa)

5.17

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 102	2.6e-13	Probable lipid transfer
Tryp_alpha_amyl	PF00234	36 - 103	8.7e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	164, 210, 285
AclWI	GGATC	3 cut(s)	31, 149, 186
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgeI	ACCGGT	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	3 cut(s)	28, 80, 87
AluI	AGCT	3 cut(s)	28, 80, 87
AlwI	GGATC	3 cut(s)	31, 149, 186
AoxI	GGCC	2 cut(s)	189, 286
AsiGI	ACCGGT	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	5 cut(s)	16, 58, 145, 216, 283
BccI	CCATC	4 cut(s)	4, 101, 157, 259
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	187
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	41, 187
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	41, 187
BpuMI	CCSGG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	191, 288
BshTI	ACCGGT	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	186, 227, 275
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	191, 288
Bsp143I	GATC	3 cut(s)	36, 154, 178
BspACI	CCGC	3 cut(s)	164, 210, 285
BspANI	GGCC	2 cut(s)	191, 288
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	3 cut(s)	31, 149, 186
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	36, 154, 178
Bst2UI	CCWGG	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	121, 125
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	3 cut(s)	39, 157, 181
BstMBI	GATC	3 cut(s)	36, 154, 178
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	39, 185
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	191, 288
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	121, 125
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	189
CspAI	ACCGGT	1 cut(s)	226
CviJI	RGCY	8 cut(s)	28, 80, 87, 127, 142, 191, 278, 288
CviKI_1	RGCY	8 cut(s)	28, 80, 87, 127, 142, 191, 278, 288
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	3 cut(s)	38, 156, 180
DpnII	GATC	3 cut(s)	36, 154, 178
EcoRII	CCWGG	1 cut(s)	39
FaiI	YATR	1 cut(s)	98
FaqI	GGGAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	191, 288
HapII	CCGG	3 cut(s)	186, 227, 275
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	3 cut(s)	186, 227, 275
HphI	GGTGA	5 cut(s)	16, 58, 145, 216, 283
Hpy188I	TCNGA	3 cut(s)	154, 159, 245
Hpy188III	TCNNGA	1 cut(s)	75
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	93, 123, 174
HpyF3I	CTNAG	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	36, 154, 178
LpnPI	CCDG	5 cut(s)	26, 53, 199, 240, 288
MaeIII	GTNAC	3 cut(s)	46, 133, 212
MalI	GATC	3 cut(s)	38, 156, 180
MboI	GATC	3 cut(s)	36, 154, 178
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	304
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	4 cut(s)	97, 232, 299, 306
MspI	CCGG	3 cut(s)	186, 227, 275
MspR9I	CCNGG	2 cut(s)	41, 187
MunI	CAATTG	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	41
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	36, 154, 178
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	46, 133
PfeI	GAWTC	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	178
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	3 cut(s)	36, 154, 178
Sau96I	GGNCC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	41, 187
SetI	ASST	4 cut(s)	30, 82, 89, 224
SgrAI	CRCCGGYG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	3 cut(s)	164, 210, 285
StyD4I	CCNGG	2 cut(s)	39, 185
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	304
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	46, 133
Tsp45I	GTSAC	2 cut(s)	46, 133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.