Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001876

Physical Location & Seq

Genomic Coordinates Reverse (-)

15287146 .. 15288037

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCCACACACTCACACACACAACTCACTACAGCACTACTCATCACAGCTACTACTAGTTTCCATTTATCTGATCAATATGGTGAAGATGTGTAGTTTCAATAAGCTAATGGCGATCCTGGTGGTGGCAATGCTTGTGTCTTTCGAAGGGTCAAGAGCTTTTACCTTTTGCAATATGAGCGAGGATGGTCTAACTGCTTGCAAGCCATCGGTGATGAAGCCGAACCCATCTGATCCGACTGCCGAGTGTTGCAAGGATCTTTCTGCTGCCGACCTGGATTGCCTTTGCGGTTACAAGACCTCGCCGGTGTTGCCTGGTTTCGGAATCGATCCCACACTCGCGATGGGACTTCCGGCTAAGTGCGGCCTCACTCCTCCTGCCAATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005504 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0008289 GO:0009506 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0023052 GO:0030054 GO:0031406 GO:0032870 GO:0033293 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

130

Amino Acids

13.83

Weight (kDa)

6.37

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	40 - 128	1e-13	Probable lipid transfer
Tryp_alpha_amyl	PF00234	63 - 129	3.8e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48485 AT5G48490
fragaria_vesca	FvH4_2g17820 FvH4_2g17830 FvH4_4g11910 FvH4_4g11920
malus_domestica	MD05G1159700.v1.1
prunus_persica	Prupe.1G179900_v2.0.a1 Prupe.8G190500_v2.0.a1
pyrus_communis	pycom05g15130
rosa_chinensis	RchiOBHm_Chr4g0409461 RchiOBHm_Chr6g0282851 RchiOBHm_Chr6g0282861
rosa_laevigata	RLG00000008561 RLG00000012862 RLG00000012863
rosa_multiflora	Rmu_sc0001616.1_g000026 Rmu_sc0006070.1_g000002 Rmu_sc0006070.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353950 Rroxscaffold_7G00185940 Rroxscaffold_7G00185950
rosa_rugosa	Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0093700 Rorug04G0094200 Rorug06G0149900 Rorug06G0150000
rosa_samantha	Rh4AG156300 Rh4BG155400 Rh4CG165700 Rh4DG149600 Rh6AG263300 Rh6AG263400 Rh6BG266200 Rh6BG266300 Rh6CG265400 Rh6CG265500 Rh6DG258000 Rh6DG258100
rosa_wichuraiana	Rw0G018700 Rw4G012030 Rw4G012790 Rw6G022730 Rw6G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	341
AciI	CCGC	2 cut(s)	288, 363
AclWI	GGATC	4 cut(s)	109, 227, 264, 323
AfiI	CCNNNNNNNGG	2 cut(s)	124, 320
AgsI	TTSAA	1 cut(s)	100
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	3 cut(s)	117, 273, 313
AluBI	AGCT	3 cut(s)	49, 106, 158
AluI	AGCT	3 cut(s)	49, 106, 158
AlwI	GGATC	4 cut(s)	109, 227, 264, 323
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	94, 223
AsuII	TTCGAA	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	4 cut(s)	179, 214, 235, 337
BciT130I	CCWGG	3 cut(s)	119, 275, 315
BclI	TGATCA	1 cut(s)	72
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	2 cut(s)	267, 364
BlsI	GCNGC	2 cut(s)	268, 365
Bme1390I	CCNGG	3 cut(s)	119, 275, 315
BmrFI	CCNGG	3 cut(s)	119, 275, 315
Bpu14I	TTCGAA	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 320
Bse118I	RCCGGY	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	119, 275, 315
BseCI	ATCGAT	1 cut(s)	327
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	124, 320
BseMI	GCAATG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	366
BshVI	ATCGAT	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	305, 353
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	124, 320
BsmFI	GGGAC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	144
Bsp143I	GATC	5 cut(s)	72, 114, 232, 256, 328
Bsp68I	TCGCGA	1 cut(s)	341
BspACI	CCGC	2 cut(s)	288, 363
BspANI	GGCC	1 cut(s)	366
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	341
BspPI	GGATC	4 cut(s)	109, 227, 264, 323
BspT104I	TTCGAA	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	304
BssMI	GATC	5 cut(s)	72, 114, 232, 256, 328
Bst2UI	CCWGG	3 cut(s)	119, 275, 315
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	199, 203
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	341
BstKTI	GATC	5 cut(s)	75, 117, 235, 259, 331
BstMBI	GATC	5 cut(s)	72, 114, 232, 256, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 310
BstNI	CCWGG	3 cut(s)	119, 275, 315
BstSCI	CCNGG	3 cut(s)	117, 273, 313
BstSFI	CTRYAG	1 cut(s)	29
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	190
BtuMI	TCGCGA	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	199, 203
Cfr10I	RCCGGY	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	327
CviJI	RGCY	7 cut(s)	49, 106, 158, 205, 220, 356, 366
CviKI_1	RGCY	7 cut(s)	49, 106, 158, 205, 220, 356, 366
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	5 cut(s)	74, 116, 234, 258, 330
DpnII	GATC	5 cut(s)	72, 114, 232, 256, 328
EcoRII	CCWGG	3 cut(s)	117, 273, 313
FaiI	YATR	2 cut(s)	80, 176
FaqI	GGGAC	1 cut(s)	360
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	267, 364
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	267, 364
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	267, 364
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	2 cut(s)	305, 353
HinfI	GANTC	1 cut(s)	324
HpaII	CCGG	2 cut(s)	305, 353
HphI	GGTGA	2 cut(s)	94, 223
Hpy188I	TCNGA	4 cut(s)	72, 232, 237, 323
Hpy188III	TCNNGA	2 cut(s)	153, 340
HpyAV	CCTTC	1 cut(s)	140
HpyCH4V	TGCA	3 cut(s)	171, 201, 252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 310
HpyF3I	CTNAG	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	72, 114, 232, 256, 328
LpnPI	CCDG	8 cut(s)	104, 131, 260, 287, 300, 318, 327, 366
Lsp1109I	GCAGC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	74, 116, 234, 258, 330
MboI	GATC	5 cut(s)	72, 114, 232, 256, 328
MboII	GAAGA	1 cut(s)	97
MfeI	CAATTG	1 cut(s)	382
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	175, 310, 377, 384
MspI	CCGG	2 cut(s)	305, 353
MspR9I	CCNGG	3 cut(s)	119, 275, 315
MunI	CAATTG	1 cut(s)	382
MvaI	CCWGG	3 cut(s)	119, 275, 315
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	177, 310
NdeII	GATC	5 cut(s)	72, 114, 232, 256, 328
NmeAIII	GCCGAG	1 cut(s)	268
NruI	TCGCGA	1 cut(s)	341
NspV	TTCGAA	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	268, 365
Psp6I	CCWGG	3 cut(s)	117, 273, 313
PspGI	CCWGG	3 cut(s)	117, 273, 313
PsuI	RGATCY	1 cut(s)	256
RruI	TCGCGA	1 cut(s)	341
SatI	GCNGC	2 cut(s)	267, 364
Sau3AI	GATC	5 cut(s)	72, 114, 232, 256, 328
ScrFI	CCNGG	3 cut(s)	119, 275, 315
SetI	ASST	6 cut(s)	51, 108, 160, 167, 276, 302
SfcI	CTRYAG	1 cut(s)	29
SfuI	TTCGAA	1 cut(s)	144
SgrAI	CRCCGGYG	1 cut(s)	304
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	2 cut(s)	288, 363
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	3 cut(s)	117, 273, 313
TaqI	TCGA	2 cut(s)	144, 327
TasI	AATT	1 cut(s)	382
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	324
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.