Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011320

Physical Location & Seq

Genomic Coordinates Reverse (-)

25395049 .. 25396162

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGGACCAGGAGGTTCAGAACGGTGGAGCTGAGAAGGTCGCTACTGAGGCCAAGAGTGTGGCTCTCGATCTCCACGCTGTGCTGGGAGTCGAAGCACCTAAGGCTGACGACGCCGTTCAGTTCTACAAGGCGGTCTTCGGCGCTGTGGAGGTTGAGCGTGGCGCGAACGCCAAGCGTAAGGCGGACCTGGAGCGCCCTCTCATCCATGTGTTGCTTCAGTTTGGCTCCTGCAAGGTTTTGGTCGTTGATCGCCTTGAAGATGACCATGCTGGTTATTATTTGTTGAGAGGAGTCTGTTTAGGGGGTATTGAAGCTGTGATCATGAAGGTTGTGGCTGCTGGAGGGATTACAGAGAGTGGTGGCGTGACTGAGGACCATGCCTTCCCTGGAAAGAAATACTCCGGCAAAGTCACGGACCCATTCGGCATTGTCTGGACCATTGTTGGCAACAAGACCATCACCGCTGCTTCTGAGACTGGGCCAGAAAACACTACTGCTGCCGAGATTGAGGCAAACAACACCACTGATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3-dmu-9_3-mt Glyoxalase

Protein Analysis

178

Amino Acids

18.67

Weight (kDa)

4.9

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g48480-like_N	PF22656	29 - 84	2.9e-19	Glyoxalase At5g48480-like, N-terminal domain
At5g48480-like_C	PF22650	104 - 147	2.9e-06	Glyoxalase At5g48480-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48480
fragaria_vesca	FvH4_2g17810
malus_domestica	MD05G1159600.v1.1 MD10G1152100.v1.1
prunus_persica	Prupe.8G190400_v2.0.a1
pyrus_communis	pycom05g15120 pycom10g13110
rosa_chinensis	RchiOBHm_Chr6g0282841
rosa_laevigata	RLG00000012864 RLG00000021743
rosa_multiflora	Rmu_sc0006070.1_g000011
rosa_roxburghii	Rroxscaffold_7G00185960
rosa_rugosa	Rorug02G0530700 Rorug06G0149900
rosa_samantha	Rh2BG610300 Rh6AG263200 Rh6BG266100 Rh6CG265300 Rh6DG257900
rosa_wichuraiana	Rw6G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AciI	CCGC	4 cut(s)	5, 134, 185, 465
AcuI	CTGAAG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	114
AdeI	CACNNNGTG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	260, 314
AjnI	CCWGG	3 cut(s)	9, 189, 388
AluBI	AGCT	2 cut(s)	32, 317
AluI	AGCT	2 cut(s)	32, 317
Alw26I	GTCTC	1 cut(s)	470
AoxI	GGCC	2 cut(s)	51, 482
ApeKI	GCWGC	3 cut(s)	338, 467, 500
AspLEI	GCGC	3 cut(s)	146, 167, 198
AspS9I	GGNCC	6 cut(s)	7, 187, 376, 418, 438, 482
AsuHPI	GGTGA	1 cut(s)	454
AvaII	GGWCC	5 cut(s)	7, 187, 376, 418, 438
AxyI	CCTNAGG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	325, 454, 487
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	3 cut(s)	11, 191, 390
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	470
BfoI	RGCGCY	2 cut(s)	147, 199
BisI	GCNGC	3 cut(s)	339, 468, 501
BlsI	GCNGC	3 cut(s)	340, 469, 502
Bme1390I	CCNGG	3 cut(s)	11, 191, 390
Bme18I	GGWCC	5 cut(s)	7, 187, 376, 418, 438
BmgT120I	GGNCC	6 cut(s)	7, 187, 376, 418, 438, 482
BmiI	GGNNCC	2 cut(s)	229, 420
BmrFI	CCNGG	3 cut(s)	11, 191, 390
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	2 cut(s)	212, 363
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	484
Bse21I	CCTNAGG	1 cut(s)	102
BseBI	CCWGG	3 cut(s)	11, 191, 390
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	204
BseMII	CTCAG	4 cut(s)	24, 39, 363, 465
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	325, 454, 487
BseYI	CCCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	53, 484
BsiSI	CCGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	53, 484
Bsp143I	GATC	3 cut(s)	70, 250, 321
BspACI	CCGC	4 cut(s)	5, 134, 185, 465
BspANI	GGCC	2 cut(s)	53, 484
BspCNI	CTCAG	4 cut(s)	25, 40, 364, 466
BspFNI	CGCG	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	229, 420
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	70, 250, 321
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	11, 191, 390
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	114
BstDEI	CTNAG	5 cut(s)	33, 48, 102, 372, 474
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	2 cut(s)	147, 199
BstHHI	GCGC	3 cut(s)	146, 167, 198
BstKTI	GATC	3 cut(s)	73, 253, 324
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	3 cut(s)	70, 250, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 104, 113
BstNI	CCWGG	3 cut(s)	11, 191, 390
BstSCI	CCNGG	3 cut(s)	9, 189, 388
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	3 cut(s)	325, 454, 487
BstV2I	GAAGAC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	61
Bsu36I	CCTNAGG	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	53, 484
BtsCI	GGATG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	525
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	3 cut(s)	146, 167, 198
Cfr13I	GGNCC	6 cut(s)	7, 187, 376, 418, 438, 482
CseI	GACGC	1 cut(s)	122
CviAII	CATG	4 cut(s)	209, 269, 325, 380
CviJI	RGCY	8 cut(s)	32, 53, 65, 107, 228, 317, 338, 484
CviKI_1	RGCY	8 cut(s)	32, 53, 65, 107, 228, 317, 338, 484
DdeI	CTNAG	5 cut(s)	33, 48, 102, 372, 474
DpnI	GATC	3 cut(s)	72, 252, 323
DpnII	GATC	3 cut(s)	70, 250, 321
DraIII	CACNNNGTG	1 cut(s)	82
EciI	GGCGGA	2 cut(s)	20, 200
Eco47I	GGWCC	5 cut(s)	7, 187, 376, 418, 438
Eco57I	CTGAAG	1 cut(s)	203
Eco81I	CCTNAGG	1 cut(s)	102
EcoRII	CCWGG	3 cut(s)	9, 189, 388
FaeI	CATG	4 cut(s)	212, 272, 328, 383
FaiI	YATR	4 cut(s)	210, 270, 326, 381
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	4 cut(s)	208, 268, 324, 379
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	339, 468, 501
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	339, 468, 501
GlaI	GCGC	3 cut(s)	145, 166, 197
GluI	GCNGC	3 cut(s)	339, 468, 501
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	2 cut(s)	212, 363
HaeII	RGCGCY	2 cut(s)	147, 199
HaeIII	GGCC	2 cut(s)	53, 484
HapII	CCGG	1 cut(s)	405
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	3 cut(s)	146, 167, 198
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	212, 272, 328, 383
Hin6I	GCGC	3 cut(s)	144, 165, 196
HinP1I	GCGC	3 cut(s)	144, 165, 196
HinfI	GANTC	2 cut(s)	90, 294
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	454
Hpy188I	TCNGA	2 cut(s)	21, 475
Hpy188III	TCNNGA	3 cut(s)	68, 325, 436
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	31, 322, 394
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 104, 113
HpyF3I	CTNAG	5 cut(s)	33, 48, 102, 372, 474
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	212, 272, 328, 383
HspAI	GCGC	3 cut(s)	144, 165, 196
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	70, 250, 321
LmnI	GCTCC	3 cut(s)	29, 193, 233
Lsp1109I	GCAGC	3 cut(s)	325, 454, 487
LweI	GCATC	1 cut(s)	520
MaeIII	GTNAC	2 cut(s)	367, 412
MalI	GATC	3 cut(s)	72, 252, 323
MboI	GATC	3 cut(s)	70, 250, 321
MboII	GAAGA	2 cut(s)	130, 272
MlyI	GAGTC	2 cut(s)	99, 303
MnlI	CCTC	8 cut(s)	7, 43, 145, 210, 284, 338, 367, 505
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	3 cut(s)	11, 191, 390
MvaI	CCWGG	3 cut(s)	11, 191, 390
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	50, 104, 113
NdeII	GATC	3 cut(s)	70, 250, 321
NlaIII	CATG	4 cut(s)	212, 272, 328, 383
NlaIV	GGNNCC	2 cut(s)	229, 420
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	2 cut(s)	367, 412
PagI	TCATGA	1 cut(s)	324
PkrI	GCNGC	3 cut(s)	340, 469, 502
PleI	GAGTC	2 cut(s)	98, 302
PpsI	GAGTC	2 cut(s)	98, 302
Psp6I	CCWGG	3 cut(s)	9, 189, 388
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	3 cut(s)	9, 189, 388
PspN4I	GGNNCC	2 cut(s)	229, 420
PspPI	GGNCC	6 cut(s)	7, 187, 376, 418, 438, 482
RseI	CAYNNNNRTG	1 cut(s)	209
SatI	GCNGC	3 cut(s)	339, 468, 501
Sau3AI	GATC	3 cut(s)	70, 250, 321
Sau96I	GGNCC	6 cut(s)	7, 187, 376, 418, 438, 482
SchI	GAGTC	2 cut(s)	99, 303
ScrFI	CCNGG	3 cut(s)	11, 191, 390
SetI	ASST	9 cut(s)	18, 34, 42, 103, 156, 192, 240, 319, 333
SfaNI	GCATC	1 cut(s)	520
SinI	GGWCC	5 cut(s)	7, 187, 376, 418, 438
SmiMI	CAYNNNNRTG	1 cut(s)	209
SsiI	CCGC	4 cut(s)	5, 134, 185, 465
StyD4I	CCNGG	3 cut(s)	9, 189, 388
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	69, 93
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	2 cut(s)	367, 412
TseI	GCWGC	3 cut(s)	338, 467, 500
Tsp45I	GTSAC	2 cut(s)	367, 412
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	5 cut(s)	7, 187, 376, 418, 438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.