Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001830

Physical Location & Seq

Genomic Coordinates Forward (+)

20101945 .. 20105302

Gene Structure 3358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G221800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCCAAGAATATTTCAGAATCTTTGAAAGGTAAAAAGCGCGCGCGAGAGACAGATACCGAAGCCGAAGCCAGCGATTTCGATCAGATTTTATCGCTAGAGGAAAATCTTACATTTAGTGACACATTGGTGGCGCTTCGCATAATGAGAGCTCAGTTTCCACAGAGTGACAAGGTATCAGTTCAGCCTTTCATTTTGCGGTCACAGTTGTATAGCAGTGTAGAGGATAGAACCCAAGTGGATAGGGATCTAGAGAATCTAAGAAGGGAGAAAGTCCTGCGCATTTTCAAGTTAAATACTGGGCAAGATGATCATGCAATAATGTTTTTTGATGACTATCTATGCCAGATGGAACGAGTTGTGAAAAGATTGGAAGAAAAGAAGGACAGTGATATTCTTGAAGTTTTTAAGTGGTTTAAATCACACGTCCTTGATAACAAGCTCGAACCTAGTATTGAACATCAAGAACTTTGTACACTATTAGCTCTTGGAGGAAAGGTGAAGGATGAACACATCTCCCTTTTAATCAATTCTGGCCTCCTTACTCGGCAACTTATTGACTCAAACATTTATTGGTTCGCAATTCCAAATATCGGTTCAGTACTTAAAGGCCTCTCTCAGGGAAGAAAGGAAGTTCTTTCTCTTCTAAACCGCAGGAGATACAAAGAAATGATGCTAGCACCTCTAGAGAAGAAGCTTCTTCGATATTCCCCACTTGATATGAGATTTCATCTTCGTGATCTGATAGGCTCAGGTCATCTCAAAACTGCCAAGACACCAACAGGCTTAGTTGTTCGAGTCTCAAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stk19

Protein Analysis

271

Amino Acids

31.25

Weight (kDa)

8.91

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20495 AT2G20495 AT2G20495 AT2G20495 AT2G20495
fragaria_vesca	FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270
malus_domestica	MD05G1195200.v1.1
prunus_persica	Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1
pyrus_communis	pycom05g18250
rosa_chinensis	RchiOBHm_Chr6g0287851
rosa_laevigata	RLG00000012462
rosa_multiflora	Rmu_sc0003877.1_g000003 Rmu_sc0007724.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180720 Rroxscaffold_7G00180830
rosa_rugosa	Rorug06G0192600 Rorug06G0192700 Rorug06G0192800
rosa_samantha	Rh6AG302100 Rh6BG308200 Rh6CG301500 Rh6CG315900 Rh6DG300700
rosa_wichuraiana	Rw6G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	281
AccII	CGCG	3 cut(s)	42, 44, 46
AciI	CCGC	2 cut(s)	199, 652
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	475, 603
AfiI	CCNNNNNNNGG	2 cut(s)	593, 619
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	4 cut(s)	28, 289, 401, 458
AjiI	CACGTC	1 cut(s)	427
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	152, 442, 485, 697
AluI	AGCT	4 cut(s)	152, 442, 485, 697
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	44, 805
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	3 cut(s)	3, 535, 610
AspLEI	GCGC	5 cut(s)	42, 44, 46, 136, 282
AsuHPI	GGTGA	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	676
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	44, 805
BfaI	CTAG	5 cut(s)	98, 251, 450, 677, 686
BfoI	RGCGCY	1 cut(s)	137
BmcAI	AGTACT	1 cut(s)	603
BmgBI	CACGTC	1 cut(s)	427
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	663
BmtI	GCTAGC	1 cut(s)	680
BmuI	ACTGGG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	751
BsaBI	GATNNNNATC	3 cut(s)	81, 246, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 619
Bse1I	ACTGG	1 cut(s)	304
Bse8I	GATNNNNATC	3 cut(s)	81, 246, 336
BseGI	GGATG	1 cut(s)	511
BseJI	GATNNNNATC	3 cut(s)	81, 246, 336
BseLI	CCNNNNNNNGG	2 cut(s)	593, 619
BseMII	CTCAG	3 cut(s)	167, 632, 765
BseNI	ACTGG	1 cut(s)	304
BsePI	GCGCGC	2 cut(s)	40, 42
Bsh1236I	CGCG	3 cut(s)	42, 44, 46
BshFI	GGCC	3 cut(s)	5, 537, 612
BsiHKAI	GWGCWC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	593, 619
BsmAI	GTCTC	2 cut(s)	44, 805
BsnI	GGCC	3 cut(s)	5, 537, 612
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	82, 247, 310, 739
BspACI	CCGC	2 cut(s)	199, 652
BspANI	GGCC	3 cut(s)	5, 537, 612
BspCNI	CTCAG	3 cut(s)	166, 631, 764
BspFNI	CGCG	3 cut(s)	42, 44, 46
BspOI	GCTAGC	1 cut(s)	680
BspPI	GGATC	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	304
BssHII	GCGCGC	2 cut(s)	40, 42
BssMI	GATC	4 cut(s)	82, 247, 310, 739
Bst4CI	ACNGT	2 cut(s)	207, 389
Bst6I	CTCTTC	1 cut(s)	648
BstAUI	TGTACA	1 cut(s)	473
BstC8I	GCNNGC	4 cut(s)	42, 44, 73, 678
BstDEI	CTNAG	5 cut(s)	153, 260, 618, 751, 787
BstENI	CCTNNNNNAGG	1 cut(s)	617
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	3 cut(s)	42, 44, 46
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	5 cut(s)	42, 44, 46, 136, 282
BstKTI	GATC	4 cut(s)	85, 250, 313, 742
BstMAI	GTCTC	2 cut(s)	44, 805
BstMBI	GATC	4 cut(s)	82, 247, 310, 739
BstUI	CGCG	3 cut(s)	42, 44, 46
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	5, 537, 612
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	223, 394
Cac8I	GCNNGC	4 cut(s)	42, 44, 73, 678
CfoI	GCGC	5 cut(s)	42, 44, 46, 136, 282
Csp6I	GTAC	2 cut(s)	474, 602
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	2 cut(s)	474, 602
DdeI	CTNAG	5 cut(s)	153, 260, 618, 751, 787
DpnI	GATC	4 cut(s)	84, 249, 312, 741
DpnII	GATC	4 cut(s)	82, 247, 310, 739
DraI	TTTAAA	1 cut(s)	418
DraIII	CACNNNGTG	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	612
Eco24I	GRGCYC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	617
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	1 cut(s)	317
FaiI	YATR	5 cut(s)	143, 213, 315, 343, 722
FatI	CATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	310
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	154
FspBI	CTAG	5 cut(s)	98, 251, 450, 677, 686
FspI	TGCGCA	1 cut(s)	281
GlaI	GCGC	5 cut(s)	41, 43, 45, 135, 281
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	5, 537, 612
HhaI	GCGC	5 cut(s)	42, 44, 46, 136, 282
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	5 cut(s)	40, 42, 44, 134, 280
HinP1I	GCGC	5 cut(s)	40, 42, 44, 134, 280
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	4 cut(s)	20, 256, 560, 798
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	3 cut(s)	19, 87, 744
Hpy188III	TCNNGA	5 cut(s)	251, 398, 464, 686, 737
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	258, 376, 496
HpyCH4III	ACNGT	2 cut(s)	207, 389
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	317
HpyF3I	CTNAG	5 cut(s)	153, 260, 618, 751, 787
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	5 cut(s)	40, 42, 44, 134, 280
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	82, 247, 310, 739
LpnPI	CCDG	9 cut(s)	85, 285, 290, 359, 519, 605, 640, 738, 768
LweI	GCATC	1 cut(s)	663
MaeI	CTAG	5 cut(s)	98, 251, 450, 677, 686
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	3 cut(s)	119, 167, 201
MalI	GATC	4 cut(s)	84, 249, 312, 741
MauBI	CGCGCGCG	1 cut(s)	42
MboI	GATC	4 cut(s)	82, 247, 310, 739
MboII	GAAGA	6 cut(s)	386, 635, 636, 692, 703, 725
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	529, 582
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	554, 807
MnlI	CCTC	6 cut(s)	94, 217, 485, 548, 623, 693
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	293, 408, 417, 524, 606
MslI	CAYNNNNRTG	2 cut(s)	128, 735
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	3 cut(s)	42, 44, 46
NdeII	GATC	4 cut(s)	82, 247, 310, 739
NheI	GCTAGC	1 cut(s)	676
NlaIII	CATG	1 cut(s)	317
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	3 cut(s)	119, 167, 201
NsbI	TGCGCA	1 cut(s)	281
OliI	CACNNNNGTG	1 cut(s)	128
PauI	GCGCGC	2 cut(s)	40, 42
PceI	AGGCCT	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	20, 256
PleI	GAGTC	2 cut(s)	554, 806
PpsI	GAGTC	2 cut(s)	554, 806
Psp124BI	GAGCTC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	247
PteI	GCGCGC	2 cut(s)	40, 42
RsaI	GTAC	2 cut(s)	475, 603
RsaNI	GTAC	2 cut(s)	474, 602
RseI	CAYNNNNRTG	2 cut(s)	128, 735
SacI	GAGCTC	1 cut(s)	154
SaqAI	TTAA	5 cut(s)	293, 408, 417, 524, 606
Sau3AI	GATC	4 cut(s)	82, 247, 310, 739
ScaI	AGTACT	1 cut(s)	603
SchI	GAGTC	2 cut(s)	554, 807
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	663
SmiMI	CAYNNNNRTG	2 cut(s)	128, 735
Sse9I	AATT	2 cut(s)	529, 582
SseBI	AGGCCT	1 cut(s)	612
SsiI	CCGC	2 cut(s)	199, 652
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	5 cut(s)	98, 251, 450, 677, 686
SstI	GAGCTC	1 cut(s)	154
StuI	AGGCCT	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	207, 389
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	4 cut(s)	81, 444, 703, 796
TasI	AATT	2 cut(s)	529, 582
TatI	WGTACW	2 cut(s)	473, 601
TfiI	GAWTC	2 cut(s)	20, 256
Tru1I	TTAA	5 cut(s)	293, 408, 417, 524, 606
Tru9I	TTAA	5 cut(s)	293, 408, 417, 524, 606
TscAI	CASTG	2 cut(s)	223, 394
TseFI	GTSAC	3 cut(s)	119, 167, 201
Tsp45I	GTSAC	3 cut(s)	119, 167, 201
TspDTI	ATGAA	3 cut(s)	181, 522, 719
TspRI	CASTG	2 cut(s)	223, 394
XagI	CCTNNNNNAGG	1 cut(s)	617
XbaI	TCTAGA	2 cut(s)	250, 685
XspI	CTAG	5 cut(s)	98, 251, 450, 677, 686
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.